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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054342 ID=TCONS_00054342|Name=TCONS_00054342|organism=Clytia hemisphaerica|type=transcript|length=1162bp
ATTAAGGTTATTTTCAGATTAAAATTAAATCGTAAAACAACCAATTTCCT
ATATTAATCTTCCAATTCAATTAATTTTAATTGGAGTTACTGTAATACTC
CAATTTTCAGATTTGTGAAATTGAGTATAAATAGGGTAGGTGTTTTCATT
TGAAATCATCACTTCAACTtttgaatcaagttcaagaagatctcaaaaca
acaaaaatgaagaCCATCATCTTGATCGCCATCTTCGCTGcTTGCTCAGC
TGAATTCTACCACCCATGTCCTGACAGACTGTGTCATGGTGCATCCTTGG
GATCCATCTTTGGATTAGGAGATAAACACCGAACACCCGATATCTTTGTC
CAATGTGCACCAGGAGCTCATGGAAAACTGAGAGCTGTTTGCCAAAAATG
TCCACGACACCAAGTATTCAGCCGTAAATTCTCAGTTTGTGTTCGACGTA
CTTTTGCTGTTTGCAAAGGAAAACATTGCAAACCACATGCTTTCAAACCA
CATCCAAAAGAATGTAAGTTTCCAACCAATTTCAATCTGTTTATttaggt
tttgttttttaagcaTGAATCATCCTATAAAATGCGCTCTTTTAGGAAAA
ATCGGTTCATGGGGGTAGAGGATGAATTGTCGAGGggtccgaaaaattgc
attgtccagggggtaaatctgcgcgatgtccaggggtaaattttggtgtc
cagggggttaaagtGATGATTGTCCATAGGTATAATCCATGACCATgggg
tgaaaaatgaaaatgtccaggggcaattaattgaaaaaataatataaaag
gTCTATACTCGCCAATATTAACTTTGTCTTTAGTTTTCATTTTAATCATC
TCTCATTTcaataattcttttaatttcaggCCCAAAATCATTGTGCGCCG
ATTACCCACACAGCGACTACGTTGTCTTCCGATACCCACACAAACCAACT
TATTACGTCCAATGTACCGCTGGAAGACCTGTCTGCAGACAATGTCCACA
TGGATTGATCTTCAACAACGACATCAAAGTTTGCGATTTCCCACCAGCCA
AGAAACATTaaactcaaaactcaaaaatttttaCCATTTGTTTTTTAACT
CTTTGTACATTAGGTTCTTTGTTTgatatgcaaaaaaaaaattaatacat
GCTCAATGAAAT Run BLAST on NCBI transcript from alignment at scaffold_242:458400..460394- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054342 ID=TCONS_00054342|Name=TCONS_00054342|organism=Clytia hemisphaerica|type=transcript|length=1995bp|location=Sequence derived from alignment at scaffold_242:458400..460394- (Clytia hemisphaerica)
ATTAAGGTTATTTTCAGATTAAAATTAAATCGTAAAACAACCAATTTCCT
ATATTAATCTTCCAATTCAATTAATTTTAATTGGAGTTACTGTAATACTC
CAATTTTCAGATTTGTGAAATTGAGTATAAATAGGGTAGGTGTTTTCATT
TGAAATCATCACTTCAACTTTTGAATCAAGTTCAAGAAGATCTCAAAACA
ACAAAAATGAAGACCATCATCTTGATCGCCATCTTCGCTGGTAAGTTTGA
TGAAAAGGGCTATTCCAGAAAATGTCCGTACATGGGGTTGGAGGATATAG
TGTCTGGGGGGAGTGAAAAATCTGAAAAATTTGTCCTGTCCGGGAGGTAA
ACTTGCTCTGTTTGGGGTAATTTTGCTCGGTTTGAGGGTTATTTTGAATG
TCCATGGGGTCAACTGATGCTTGTTTAAGCTTTGTTGAAATTTAAAAACT
TGGCTACGAAACGGTAAACATTGATGGCAGGATACCTAAAAAATAAACAA
TGTACTTTCTTGTTTTTTTAGCTTGCTCAGCTGAATTCTACCACCCATGT
AAGTATTNACTTTGCTGAAATTTAACAACTTGGCTACGAAACGGTAAACA
TTGATGGCAGGATACCTAAAAAATAAACAATGTACTTTCTTGTTTTTTTA
GCTTGCTCAGCTGAATTCTACCACCCATGTAAGTATTAATCTCATTATCA
AAACTAATTACTAATTACCTCGATTAAGCAATATACACAATTCAGTGTCC
ATATTCTTCCGAAATTCGAAATACAGTTGACAGTCTCTAATTCGATTTCG
AAGGGAAATTCGATTCTTATCGAATAAGGGGGCGTATCGAATAGTAGAGC
ATCGTTTATGAGAGTTTCTTGTCGGCAGTGACTTCAAATATTATCGAATA
ATGGAGCGTATCGAAAAGTAGAACGTCGAATTGGAGAGCGTCAACTGTAG
TTCCCTAAGCTTAAAAAAGGCTCTAAAGCATTCAAAGATTTTTGTTTCTT
GAAAATAGGACGATGATCGTGAAAATACAATGATTATAAAACAACCATAC
CTCTTTCGCATGTCTCAAACCTTCAACAAAAATTTTCCAAATCCTTCTAG
GTCCTGACAGACTGTGTCATGGTGCATCCTTGGGATCCATCTTTGGATTA
GGAGATAAACACCGAACACCCGATATCTTTGTCCAATGTGCACCAGGAGC
TCATGGAAAACTGAGAGCTGTTTGCCAAAAATGTCCACGACACCAAGTAT
TCAGCCGTAAATTCTCAGTTTGTGTTCGACGTACTTTTGCTGTTTGCAAA
GGAAAACATTGCAAACCACATGCTTTCAAACCACATCCAAAAGAATGTAA
GTTTCCAACCAATTTCAATCTGTTTATTTAGGTTTTGTTTTTTAAGCATG
AATCATCCTATAAAATGCGCTCTTTTAGGAAAAATCGGTTCATGGGGGTA
GAGGATGAATTGTCGAGGGGTCCGAAAAATTGCATTGTCCAGGGGGTAAA
TCTGCGCGATGTCCAGGGGTAAATTTTGGTGTCCAGGGGGTTAAAGTGAT
GATTGTCCATAGGTATAATCCATGACCATGGGGTGAAAAATGAAAATGTC
CAGGGGCAATTAATTGAAAAAATAATATAAAAGGTCTATACTCGCCAATA
TTAACTTTGTCTTTAGTTTTCATTTTAATCATCTCTCATTTCAATAATTC
TTTTAATTTCAGGCCCAAAATCATTGTGCGCCGATTACCCACACAGCGAC
TACGTTGTCTTCCGATACCCACACAAACCAACTTATTACGTCCAATGTAC
CGCTGGAAGACCTGTCTGCAGACAATGTCCACATGGATTGATCTTCAACA
ACGACATCAAAGTTTGCGATTTCCCACCAGCCAAGAAACATTAAACTCAA
AACTCAAAAATTTTTACCATTTGTTTTTTAACTCTTTGTACATTAGGTTC
TTTGTTTGATATGCAAAAAAAAAATTAATACATGCTCAATGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054342-exon-scaffold_242-1575043694:460155..460394 | TCONS_00054342-exon-scaffold_242-1575043694:460155..460394 | Clytia hemisphaerica | exon |
| TCONS_00054342-exon-scaffold_242-1575043694:459847..459873 | TCONS_00054342-exon-scaffold_242-1575043694:459847..459873 | Clytia hemisphaerica | exon |
| TCONS_00054342-exon-scaffold_242-1575043694:458400..459294 | TCONS_00054342-exon-scaffold_242-1575043694:458400..459294 | Clytia hemisphaerica | exon |
| TCONS_00054342-exon-scaffold_242-1510915933:460155..460394 | TCONS_00054342-exon-scaffold_242-1510915933:460155..460394 | Clytia hemisphaerica | exon |
| TCONS_00054342-exon-scaffold_242-1510915933:459847..459873 | TCONS_00054342-exon-scaffold_242-1510915933:459847..459873 | Clytia hemisphaerica | exon |
| TCONS_00054342-exon-scaffold_242-1510915933:458400..459294 | TCONS_00054342-exon-scaffold_242-1510915933:458400..459294 | Clytia hemisphaerica | exon |
| TCONS_00054342-exon-scaffold_242-1491911889:460155..460394 | TCONS_00054342-exon-scaffold_242-1491911889:460155..460394 | Clytia hemisphaerica | exon |
| TCONS_00054342-exon-scaffold_242-1491911889:459847..459873 | TCONS_00054342-exon-scaffold_242-1491911889:459847..459873 | Clytia hemisphaerica | exon |
| TCONS_00054342-exon-scaffold_242-1491911889:458400..459294 | TCONS_00054342-exon-scaffold_242-1491911889:458400..459294 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:458400..460394 - |
Blast
The following BLAST results are available for this feature:
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