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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054337 ID=TCONS_00054337|Name=TCONS_00054337|organism=Clytia hemisphaerica|type=transcript|length=2090bp
atgatttttcaaaaaaatgtgcaTTATATTTGGTCTTATActgtaaaagt
ttttttgaaaaattattaaaaacttCTAATTCATCTTTTActtctttaga
aaaaagaaaagaagcatTCATTCAATGATtgttgtttcaaataaaaatgt
ttcgaCAAGTGAAACAGAAGATAACTACTTTCTTCAGTCCAGGTCAAAGT
GAACCCCAACCCCCAATAGCAAGGAGAGACCGTAAACGCAGAAGAACAGA
GGATGAAGATGAAGACTGTGTTATAACTCACACTGTAAATAAACGCCAGA
GAAGAGGTCAGTCTCCTTTTGGATGGACTATCACTAATTTATctaatttg
tttgattttgttcgTGGAAAAGTTATGAGGCCAACAGTTATTATTGATAA
AGAAGATGACGTTGTTGTGATAGAAACACCTGTTGCTCGGCATTCAGACA
GAACTATTTTGACACCTGCTAGCAAGTTACGCTTTTCAACCAGTGCTAGC
ATTGGTAAGCGAGCTAGTCTTCAACAGATTTCCAAGGCAACTGTTTTTGA
CCTGACACAATTTGACAATGAGGAGGAGAGTGAAAATGATCCTGATGTGT
CTTTGACCAGTATTCGATATGACCTCACTGGTAATTCTCTCAAGTCCAAC
CTCAACAAGACTCCAAGGAAAACATCTCGAAGGAAGCCTTCATCACCATC
ATCTGTGTTCCTTCAAGAAAACTTTCGTTTAGAAGAGAAAGAACGATATA
AACAATTGTTGTCACAATTCACTGATGTTTCATTACCGGAATATTCAGAA
TCTATTTCACCGAGAAGATCATCTCAAGAAAGTCCTACACGTTCTACATT
TAGTTTCAGCTCAAATACTGAGACCATCAATTCCAGTCCCTtattctatc
aaaagtcacTTCAAAAACCTGTTGATATTGATTTAACCAAATCTGAACTA
TCAGCAAGCTTTATGAAAAAGGATAGTGATAGAAAGAAATACATTGACTT
GACTTATACAGAACCTAAAGATTTGGTGGTTATTGATGAACCAGTATTAA
GGAATACAAGCAGTAAATCTTCTACTGAGCCTTCTAAAACAAGTGATATT
TCAAACCTTGAATGGATTCAGAAATGGAGAGATGTGTTGGACCCAGCAGC
ATTAGAGCGCAATCGTCGTATCGAAGCTGAAGAACGTAAACTTGAAGTAC
TCAAAAATAAGCAGTTACAAGAGATTGAAGAGCTCAGCAAGCAAGCTCAA
AATGAGTTTCCAGAGCTTACAAACGAAATGTTGGATAAGGTCAAAAGAGC
CCTTGGACCTGGTCATCAGAAAGAAGTTTTTGTCCAAGGTTTCAATGCGG
AAATCACGCGTGGCGATATTGCCACACTTCGAGATTCAACTTGGCTTAAT
GATGAAGTGgtcaatttctattttaatttgTTGAAAGCTCGAAGTGAGAG
TGATGGTAATCTTCCAAAAGTTCATGTTTTTAATACCTTCTTTTACCCTA
AAATCATGAAAACTGGTCATGCAGGTGTCAAACGATGGACCagaaaagtt
gatatttttgcaGTTGACGTTATCCTTGTTCCAGTTCACTTGGGAATGCA
TTGGTGTTTAGCAGTCATTGATTTTAAGAACAAAGAGATTGTTTATTATG
ATTCACTGAAGGGTAATAACCCAAGTTGTATTCAAGGGTTGAAAAAGTAT
TTAGCTGACGAATCGATGGATAAAAAGAAGAAACCTTTCGATTTTGAAGG
TTGGAATGAATTGATGCCCAAAGATATTCCTGAGCAAATGAATGGATGTG
ATTGTGGCGTCTTCATGAGCAAGTATGCAGAATATAAAAGTCGATATGCG
AAATTCACTTTTACTCAAGAGAATATGCCATATTTTCGAAAGAGAATGAT
TTACGAGATCCTGAGTAAAGAGTTACTATAAATTGAAGCACTTTCGATAC
ttgttttaataaaatttaatttttgtctaTTATATCAatccttgaaaata
ttttaaatgtgtTTAGTTTTAAATTTCATGGTAGTTCATTCTGAATTCTC
GAATCAAGGTCAATAGTTTTACTCATTGGGTTGAATTAAT Run BLAST on NCBI transcript from alignment at scaffold_242:426655..428744- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054337 ID=TCONS_00054337|Name=TCONS_00054337|organism=Clytia hemisphaerica|type=transcript|length=2090bp|location=Sequence derived from alignment at scaffold_242:426655..428744- (Clytia hemisphaerica)
ATGATTTTTCAAAAAAATGTGCATTATATTTGGTCTTATACTGTAAAAGT
TTTTTTGAAAAATTATTAAAAACTTCTAATTCATCTTTTACTTCTTTAGA
AAAAAGAAAAGAAGCATTCATTCAATGATTGTTGTTTCAAATAAAAATGT
TTCGACAAGTGAAACAGAAGATAACTACTTTCTTCAGTCCAGGTCAAAGT
GAACCCCAACCCCCAATAGCAAGGAGAGACCGTAAACGCAGAAGAACAGA
GGATGAAGATGAAGACTGTGTTATAACTCACACTGTAAATAAACGCCAGA
GAAGAGGTCAGTCTCCTTTTGGATGGACTATCACTAATTTATCTAATTTG
TTTGATTTTGTTCGTGGAAAAGTTATGAGGCCAACAGTTATTATTGATAA
AGAAGATGACGTTGTTGTGATAGAAACACCTGTTGCTCGGCATTCAGACA
GAACTATTTTGACACCTGCTAGCAAGTTACGCTTTTCAACCAGTGCTAGC
ATTGGTAAGCGAGCTAGTCTTCAACAGATTTCCAAGGCAACTGTTTTTGA
CCTGACACAATTTGACAATGAGGAGGAGAGTGAAAATGATCCTGATGTGT
CTTTGACCAGTATTCGATATGACCTCACTGGTAATTCTCTCAAGTCCAAC
CTCAACAAGACTCCAAGGAAAACATCTCGAAGGAAGCCTTCATCACCATC
ATCTGTGTTCCTTCAAGAAAACTTTCGTTTAGAAGAGAAAGAACGATATA
AACAATTGTTGTCACAATTCACTGATGTTTCATTACCGGAATATTCAGAA
TCTATTTCACCGAGAAGATCATCTCAAGAAAGTCCTACACGTTCTACATT
TAGTTTCAGCTCAAATACTGAGACCATCAATTCCAGTCCCTTATTCTATC
AAAAGTCACTTCAAAAACCTGTTGATATTGATTTAACCAAATCTGAACTA
TCAGCAAGCTTTATGAAAAAGGATAGTGATAGAAAGAAATACATTGACTT
GACTTATACAGAACCTAAAGATTTGGTGGTTATTGATGAACCAGTATTAA
GGAATACAAGCAGTAAATCTTCTACTGAGCCTTCTAAAACAAGTGATATT
TCAAACCTTGAATGGATTCAGAAATGGAGAGATGTGTTGGACCCAGCAGC
ATTAGAGCGCAATCGTCGTATCGAAGCTGAAGAACGTAAACTTGAAGTAC
TCAAAAATAAGCAGTTACAAGAGATTGAAGAGCTCAGCAAGCAAGCTCAA
AATGAGTTTCCAGAGCTTACAAACGAAATGTTGGATAAGGTCAAAAGAGC
CCTTGGACCTGGTCATCAGAAAGAAGTTTTTGTCCAAGGTTTCAATGCGG
AAATCACGCGTGGCGATATTGCCACACTTCGAGATTCAACTTGGCTTAAT
GATGAAGTGGTCAATTTCTATTTTAATTTGTTGAAAGCTCGAAGTGAGAG
TGATGGTAATCTTCCAAAAGTTCATGTTTTTAATACCTTCTTTTACCCTA
AAATCATGAAAACTGGTCATGCAGGTGTCAAACGATGGACCAGAAAAGTT
GATATTTTTGCAGTTGACGTTATCCTTGTTCCAGTTCACTTGGGAATGCA
TTGGTGTTTAGCAGTCATTGATTTTAAGAACAAAGAGATTGTTTATTATG
ATTCACTGAAGGGTAATAACCCAAGTTGTATTCAAGGGTTGAAAAAGTAT
TTAGCTGACGAATCGATGGATAAAAAGAAGAAACCTTTCGATTTTGAAGG
TTGGAATGAATTGATGCCCAAAGATATTCCTGAGCAAATGAATGGATGTG
ATTGTGGCGTCTTCATGAGCAAGTATGCAGAATATAAAAGTCGATATGCG
AAATTCACTTTTACTCAAGAGAATATGCCATATTTTCGAAAGAGAATGAT
TTACGAGATCCTGAGTAAAGAGTTACTATAAATTGAAGCACTTTCGATAC
TTGTTTTAATAAAATTTAATTTTTGTCTATTATATCAATCCTTGAAAATA
TTTTAAATGTGTTTAGTTTTAAATTTCATGGTAGTTCATTCTGAATTCTC
GAATCAAGGTCAATAGTTTTACTCATTGGGTTGAATTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054337-exon-scaffold_242-1575043694:426655..428744 | TCONS_00054337-exon-scaffold_242-1575043694:426655..428744 | Clytia hemisphaerica | exon |
| TCONS_00054337-exon-scaffold_242-1510915933:426655..428744 | TCONS_00054337-exon-scaffold_242-1510915933:426655..428744 | Clytia hemisphaerica | exon |
| TCONS_00054337-exon-scaffold_242-1491911889:426655..428744 | TCONS_00054337-exon-scaffold_242-1491911889:426655..428744 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:426655..428744 - |
Blast
BLAST of TCONS_00054337 vs. Swiss-Prot (Human)
Match: SENP1 (Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2) HSP 1 Score: 274.633 bits (701), Expect = 1.525e-81 Identity = 137/305 (44.92%), Postives = 189/305 (61.97%), Query Frame = 3
Query: 1113 WIQKWRDVLDPAALERNRRIEAEERKLEVLKNKQLQE-------------------------IEELSKQ------AQNEFPELTNEMLDKVKRALGPGHQKEVFVQGFNAEITRGDIATLRDSTWLNDEVVNFYFNLLKARSESDGNLPKVHVFNTFFYPKIMKTGHAGVKRWTRKVDIFAVDVILVPVHLGMHWCLAVIDFKNKEIVYYDSLKGNNPSCIQGLKKYLADESMDKKKKPFDFEGWNELMPK--DIPEQMNGCDCGVFMSKYAEYKSRYAKFTFTQENMPYFRKRMIYEILSKELL 1928
WI++ V D A ER R+IE ++ L+N++LQE ++E K+ +++EFPE+T EM ++K G+Q EV + F ITR DI TL WLNDE++NFY N+L RS+ G LP VH FNTFF+ K+ G+ VKRWT+KVD+F+VD++LVP+HLG+HWCLAV+DF+ K I YYDS+ G N + L +YL ES+DKK+K FD GW K +IP+QMNG DCG+F KYA+ ++ FTQ++MPYFRKRM++EIL ++LL
Sbjct: 341 WIKELTSVYDSRARERLRQIEEQKALALQLQNQRLQEREHSVHDSVELHLRVPLEKEIPVTVVQETQKKGHKLTDSEDEFPEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKG-LPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRKLL 644
The following BLAST results are available for this feature:
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