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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054336 ID=TCONS_00054336|Name=TCONS_00054336|organism=Clytia hemisphaerica|type=transcript|length=1027bp
ttcagctaaaaaaaacgaatcaataaatagaaacaaaaatGAAACGTTAC
AGACGTCAAGAGATGGATGATTCCGAATCAGACCTTGAGAAAGAAGCTGA
CGATTATGTTCCATACGTTCCAATCAAAGAACGTAAGAAACAAATGTTGA
TTAAACACCGTATCATCAGTGAGTtggaaaaacaaaaagacagTGGTCAG
GAgagtgaaaatgaagaagtgttgaaacaaaaagaaaaagaagcacGCCA
AGCTATGAGTTTGTTGGATCAACATCATGAATTCAAAGACGAGGAGGATG
AAGTGAAAGAGACTGAAATGGAGAAACAGTTACGCGAGGAACAGAAGATT
CTTGAAAGTGTGGCTGAACGTAAAGCCTTGATGGCTGCTGCTGAGCTAGC
TAAAGGTATCACTTACGAAGAGGCTTTAAAAACTTCTTGGAAACCTCCCA
GATATATTTCTGCGTATTCAGAAGAACGTCATGAGAAAGTTCGTAAGAAA
TATGGCATCCTTGCTGAAGGTAATGATTGCCCTCCACCTTTGAAACGTTT
TCGTGAAATGAAATTTCCTAAAAGTATTTTGAACTGTTTAAAAGCAAAAG
GTATTACGAACCCAACTCCAATCCAAATGCAAGGCATCCCGGTTACCTTG
TCTGGTCGTGATATGATCGGAATCGCTTTTACTGGTTCTGGAAAAACTCT
TGTGTTCACGTTACCAATCGTTATGTTTTGTATTGAACAAGAAAAAGGGT
TGCCTTTCCGTAAAGGTGAAGGCCCGTACGGTTTACTCATCTCGCCGTCC
CGAGAGTTGGCCAAACAAACGGCCGACATTATTAAAGAGTTTGTAGCAGC
TTTGGCAAAAGATGGCTTACCAGAGTTGAAGGTTCTTTGTTGTATCGGTG
GGACTTCCATGAAAGAACAAGCAGAGACGATCAAGCATGGTGTTCACATT
GTAGTGGCCACACCAGGACGTTTGATGGACTTGTTGAATAAGAAGATTAT
GAATCTCGATATTTGTCGGTATTTATG Run BLAST on NCBI transcript from alignment at scaffold_242:418568..425474- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054336 ID=TCONS_00054336|Name=TCONS_00054336|organism=Clytia hemisphaerica|type=transcript|length=6907bp|location=Sequence derived from alignment at scaffold_242:418568..425474- (Clytia hemisphaerica)
TTCAGCTAAAAAAAACGAATCAATAAATAGAAACAAAAATGAAACGTTAC
AGACGTCAAGAGATGGATGATTCCGAATCAGACCTTGAGAAAGAAGCTGA
CGATTATGTTCCATACGTTCCAATCAAAGAACGTAAGAAACAAATGTTGA
TTAAACACCGTATCATCAGTGAGTTGGAAAAACAAAAAGACAGTGGTCAG
GAGAGTGAAAATGAAGAAGTGTTGAAACAAAAAGAAAAAGAAGCACGCCA
AGCTATGAGTTTGTTGGATCAACATCATGAATTCAAAGACGAGGAGGATG
AAGTGAAAGAGACTGAAATGGAGAAACAGTTACGCGAGGAACAGAAGATT
CTTGAAAGTGTGGCTGAACGTAAAGCCTTGATGGCTGCTGCTGAGCTAGC
TAAAGGTATCACTTACGAAGAGGCTTTAAAAACTTCTTGGAAACCTCCCA
GATATATTTCTGCGTATTCAGAAGAACGTCATGAGAAAGTTCGTAAGAAA
TATGGCATCCTTGCTGAAGGTAATGATTGCCCTCCACCTTTGAAACGTTT
TCGTGAAATGAAATTTCCTAAAAGTATTTTGAACTGTTTAAAAGCAAAAG
GTATTACGAACCCAACTCCAATCCAAATGCAAGGCATCCCGGTTACCTTG
TCTGGTCGTGATATGATCGGAATCGCTTTTACTGGTTCTGGAAAAACTCT
TGTGTTCACGTTACCAATCGTTATGTTTTGTATTGAACAAGAAAAAGGGT
TGCCTTTCCGTAAAGGTGAAGGCCCGTACGGTTTACTCATCTCGCCGTCC
CGAGAGTTGGCCAAACAAACGGCCGACATTATTAAAGAGTTTGTAGCAGC
TTTGGCAAAAGATGGCTTACCAGAGTTGAAGGTTCTTTGTTGTATCGGTG
GGACTTCCATGAAAGAACAAGCAGAGACGATCAAGCATGGTGTTCACATT
GTAGTGGCCACACCAGGACGTTTGATGGACTTGTTGAATAAGAAGATTAT
GAATCTCGATATTTGTCGGTAAGAATATGTTTTGCTTTTTCTTTTTTCAA
GTTATCTAACTTTCATCATCAGGTAGGTCCATTCAGCACATTCTGATAAA
TAACGAGATTGCTCACGGGAATTTCTAGCCCGTGCGAGCAAACCCGCGCC
TGTCAATCATTTTTTAGACCTGTCAATCATTTCTAAGTAGTTTTTCCTTT
TTTTTCACTTGTGGTTCTGAAAAAAGTGTTTGTAAGATAACAGAAAAAGA
CGAAAGTCGATTTTTATGCATCTTTTTTAGCTGAAAGTTTTGGAATACTG
GATTTTCGAGAGAAGGGAAAGTCATGACTCTTGACTCTTGACTCTTACCA
GCTAACCAACCTGATCCATTTTGAAATACTGTACTTGAGTCGACTTGAGT
CAAACTGCATTCAGTGCATTGAGGTGACACTACTTAGAAACTTTTTGTTT
CTTAAAATTATAACGGGAATTTTCGAAAACATCAATGAGAGCCCATAAAA
CCAGAAAAAGTTTGGCTAATGCTGACAAAATAACAAACTTCAACGCACCG
TATAGGATTCGAACTCTCAAAAACGATATTTCCAAATTGGCCATTTTATC
GCCATATCCAGTCGGCCATGTAGGAGTTAACTGATGGTGAACAATGATAT
AAGGGCTACATACACTACANGTCGGCCATGTAGGAGTTAACTGATGGTGA
ACAATGATATAAGGGCTACATACACTACACAATATATTGTCAGGCAATAT
ATTGATGATATATTGCTGGATGTCGACAATATATTGAAAAGGTGTCCGCA
ATATATTGTCAGCTCGATTTGCAATATTCCAACAATAAAGGGGGATTGTT
TACAGAAAGAAAATTCCTTTTTATAATAGAGTACCAGTTGCTTACTTCGT
ACATTACGGTCCGCAAACCATATTGTCGAATATTGTTCGTCAATATATTG
TGTAGTCTAAGTAGCCTATTACAATAATTTTATTTACCCTGTGTCAAGGT
ATTAACTTCTTAAACAAATGATTTAAGATCATTTCCAACATGCAGGAGCC
GATCACTCATCGAGATTTTCAGGGGATTTTCAGAACTCTTTAGTAGGACT
GCAGCAAACGGGCTGTAAACCCTGCTAGTGCCTGTAAAATTAGAATTTCC
ATCTGGGGAGTTAGGGCACTCTCCAATCTCCTTAAAGTCTCAAAAGACTG
AGGAGAGGAGCTTTTTCTTCCATACAGTACCCATATACAGCAGACAGAAT
TCACAGAGCGTACACGCGCGGGCGATTATTAAACACGATCGCGCGGAATG
CGGGTCAAAAAATTCCCGTGAGCAATCTCGTTATTTATCAAAAAGTCATT
CAGCATCTAGTTTCAAGTTTTATTGTGAAGAAATTGTCTATGATTCGTTA
TATTCATGACGTAATGTCTTCACATGCGCAAGCACCTGAAATAGCCAGCG
CATTTGCCAGTTAGTGTTATTGTTTAAAATTCAAAAATTAGTGACAAACA
CCCGNTGGGTACTAACTGTAAAAAAAGCTGGTATTATCCAAAAGCCTTTT
TTAATGTAGGAGCTTAATTTGTCTTACTCTCCAGACTTACCAAATCAGCT
TGAGTCTTAATTTTTTTTTAATTGATATTGTTTTTATTCCAATATTCTTT
AATACCATATACTGTAGGATATACTGTTAAATTTCACAATGGTTTTGAAC
AAATTTTAAAGATATTTGATTGTTGTCGCCTAACGAAATTCGTTATATCT
TATATTCAATAAATTCAAATATAACATAAATGTTCACAGTCGCTTGAACT
TTTGGAGAGTGAAGGAAGGTTATCTTTGCTCCATGGAGTTCGACTGCCCC
GGAGGCACAATAGAACTGAACTCAAAAGAGCAAAGACCACCTTTCTTCTA
ACCCAAGTTGTTGTGACTGACAAAGGTTCATCTCTTTTTTTCGGATAAAA
GTTCACTGAGTCTTTTATAGAAGCACTTAGTCTCTCTTCCCATGCCGCCC
ATAGCGGTAAAAACAATATGAGTGAATGAGCCGTGCTCAATTTGTAAAAT
TCTCGAATTGTATACGCGCTTCTTTTCTTTCTCGTTCGAGTCATATGCTT
TGGAAATAGTGGAATTCGAGAACTGTTTGGCGATTGGGTTGAAAACCCTT
ACGTCAAATAATGCCTTCTGTCCTGGAATCCAAAATCCCCTAGCAGCGAT
ATCGAGACGAGCGTTGTCTTGAATGTTCGTTGACTTTGTGTCGAAACTTT
CTCCTGACAAGGGGGTCAAAACTGGTTCGACCTTAACGTCGTAGAAAAAA
CGCGTGTGACGTCTAGTATAGGCTAACTATAAAGTGGCAAACTCTGAAAA
GTAGTCTGGATTGCGTAATAATTGTCGCAGTTATAACTAAGTTATTATTC
CCAAAAATTTAGTTCGAAATGTTTTCCAAATCTTTTTGACGTGTCATTGA
TTATTGAGTTTTTCTTTTTTGGTACTGTCTCAATTTTCTTTTTAAAAGGA
AAAAGAACAGGTTCTCGCATGAATAGAACTAGTAGCTAAAGTTACACCTA
CTATGTTATATTCCATAGATGTTAATTTATTTATGAGATACCCAAGAGGT
TATCAAACTTTTTCCAATTCTGTAAAATCAGCATGTCTATCTCCTTTGAA
TATAGTTTCTTGATCAAGTGAAAGTTTCAATGATAGATAATGACAACCTA
AACAAAACACACTGACAAGATAAGTGAATTGTGAAAAGGAATCTTTGATA
CTTTTTTATCGTCTACTTTGGAATTATAAAATATATACTTCTTTAAAAAT
AATTTTTCGCTTTGGACAAAATGACAGAATATGTGATCGAACTGTTGTAT
TTGGTGGCATTATTCTTATTACCAGAAATCTCTGCGAAAATCTTCAACCT
TATCAGTACAGAGGGATCTATCAACGGCACTTCTTTTCGTTCAATCGAGG
GAGCTCCCTATCAGCAATGCTTCAGTTTCTGTCAACACTCACAAAAATGT
TTTTCATTCGAAGTTTTTCGATCACCAACGTTTACCTGTTGTTACTTTTA
CAAAGAAATATACAACAATTCAATGGTATTGGTCAACAAGCCCAATGTGA
ATTACTACTCGGTCGATAACGCAAAAGATTGTGCTGGCTTGTACCAGAGT
GGCAAACGCACCAGTGGTGTGTATGAAGTCTACTTGTTTGGACTCTACCG
TAAGAAAGTGTTTTGTGATATGCAATTAGCTGGTGGAGGATGGATGGTTT
TTCAGAAGAGATTTGACGGTAGTGTGGAGTTCTTTAACAAGGAATGGGAA
GATTATAAGGAAGGATTCGGCGACATTACTGGTGAGCATTGGTTAGGCAA
CAGATGGTTGAATCTTCTGACAACATCTGAAAAATACGATTATCTGGTGT
GGGCAAAAGCGTTCGACGGCGGTGTTCGTATGAAGAAAATGCTTGGTGTG
AGAGTGGAGAACGAGGCTGATGGGTTCATGATCACCTTCGAAACTGAAAC
GTGTGAATTCAGCCCAGATGAGCAGTATGGAAAATTTATGAATGGTTCAA
AATTTTCAACAGAAGACTGTGCTTTGAAATTTGGACCTTGGTGGCACGGG
TGGTCATATTGTCATGCCGATTGTATGAATGGCAGATACAGTACAACCGG
CAATCTGTCGGAGTTTGCCAACGGCATCATTTGGCAAAGTTGGAAAGGAT
ATTATATATCACTGAAAGAAAGTTCAATCATGATCAGACCTCGTTCATTT
AATCCGTGAATAATGACTTTCTGTTTACCATTGGTCATGAGTATAAATCT
CTTAAGGCGTTAGGTACAGAGAGTTGGAAGGATATTATAAATCACGGAAA
GAACCTCGTTCGCTCTATTGAGATGTTCATACAGGGGGTTGGACGAACCT
TTTCAAGTCAAAATGAAATTATTGAAAATGTGTGGATACCCCCCTAGAAA
AGGGCAAAATTTGCAAAAATACCCTTGGAAGAATTCTTTTCATACCTTAA
AATGAAGTTGGCTGAACTAAAATCAGTTTTTTCCCCCTATAAATTTTAGA
ATAACTTTTTTAAGTACCCCTTTGGAAAAATGAAAAAAACACCCCCTGGA
AATTTTTTCTCGGATTACCCCCTGGAAATGTTCGTCCAGCCCCCTGAATG
GATATAAAATGGAATGGTCTATTTGTGAATAGAAGAATCATGAAATGTTC
ATATGTGCGCTTGTTTATCTTAACCATACTGGTAATGAGTGGAACTTTCG
CTGTTGGTTTTCATATATTGAATATGTTTTAGAAACAACGATCTTAAGCC
AGTGTGTCCCAAAAAAGCGTTTTATATAAAGTAAAATCCTCAAAACTTTT
TATCTAAACTGGGTTTTTAGAATAACTGAAATAAGATCAAATCTCTGTGT
AATCAATAAAAAGTCCCAAGATGATTGAATAGGTTTTGGAGATTGAATTA
TTAAGTAAACAAGATGTAAAATTTAAAATCGATAATTATTAGGGTTTAAC
TTTAAATATTTGTCCGCTTTTTTTCGGGACACAGTATATACCTTTTCGCG
TGATACGGTGTAGATAATGAGGTGATTTATCTTAAAAAAACATTGTTATG
TACTCTCTTACCTAATAAGCGTCCTACCCCGCTAATCAATTTTTCGAAAA
TTTTGGGAAAATATTTTTGAAAGCTCCCTCTTTTGCACTAATCCTGCTGT
ATTTGCCTCCTTTTCAAAAATTTTCCTCCCAGGACATTCCACCCCCCCCC
GTTAATTAAGTTTTGAGATTTTCTCTAACCTCCCTGCTTATTCTAACCCC
CCCCCGGCTATTAGGTACCAGAGAGTAATTATTAGGGTTTAAAACTTGTG
TCCGCTTTTCTTTTTGGGACACGCTTTATATACCTTTTCGGGTGATAACT
GCTTTGAAGCCAATTTAAGGATTTTTATAGGTTTTGGTGTTAAGCTCAGA
TTTGGGCAATGGTGGATTAAGGGCCAGCGCTTACCTAGGCCGATTAGGTA
TCTATTGATTGGACAAATAATTTTTTTATTATAATATTTTCAAATTCAGT
GATGAAATCTGCTTCGCTCCTGCCTCATTGTAAAATAAGTTTCATATACT
TTATCTGCTTATATATACACCGATAAAAAAACTATCAAAGCGAAATGTTT
CAATAATGATGATATTGCCATGCGAGTTCAACGGGTAGGGGAACACTTAG
GGAAAATGGGTACCGGGTATGTGTGAGGGGTAATGGTTAATTTCTTATAC
CTCAAAGACCCTTCTAAGGGTTACAATTCACAAACCACAAACTGACTAAA
ACTGTTAGGAGGGTTCTCTAAAGACCGGTCTGGATACCGAATCTTTTATA
TTGAATAACCTAGTCTACACAATAGACAGCTCTAGGCTTTTAAGCCTCAC
TCTTGGTCTATAGGCACTGCTATAGGCGGCCACTAGTAGCCCCCACCGGG
AAGTGCTTATTAATATGTTTAAACATAATAGAAATAGTTTCGAAACTCTC
TATTGTATCATTAAAACCTCAGTGCGCATGCGATTTATCCGAAGAATTTC
AATATTCAGACAAGAGCAGTGCTCATATCCCGAAGAGTAGGAGTTTTACT
CTCGAAACGAAGGAAGATATGACGTAGCCTATGAATAACCATTCTCTTTA
AACCCTTTGTGCGCGCTGTTTTTAGCTTTTGATTTAGAAGATGGTTTTGG
TACCATGCCCCTTTAAATCAAGTGGTCAGGAGCTATGGCCTCAAACTGAG
ACTCAGTGTTGTTTTGGACGTATATACGCGTCCCTCGTGGTCTAAGGGTT
AATGGTCCTATTACAGGTTCACCTATCGATTCCCTAGACGAATTGTTTAT
TTTATTCCGTTCTTTTATGTACAAATTATTTGTTCTTCTTTGTTGCAGGT
ATTTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054336-exon-scaffold_242-1575043694:424457..425474 | TCONS_00054336-exon-scaffold_242-1575043694:424457..425474 | Clytia hemisphaerica | exon |
| TCONS_00054336-exon-scaffold_242-1575043694:418568..418576 | TCONS_00054336-exon-scaffold_242-1575043694:418568..418576 | Clytia hemisphaerica | exon |
| TCONS_00054336-exon-scaffold_242-1510915933:424457..425474 | TCONS_00054336-exon-scaffold_242-1510915933:424457..425474 | Clytia hemisphaerica | exon |
| TCONS_00054336-exon-scaffold_242-1510915933:418568..418576 | TCONS_00054336-exon-scaffold_242-1510915933:418568..418576 | Clytia hemisphaerica | exon |
| TCONS_00054336-exon-scaffold_242-1491911889:424457..425474 | TCONS_00054336-exon-scaffold_242-1491911889:424457..425474 | Clytia hemisphaerica | exon |
| TCONS_00054336-exon-scaffold_242-1491911889:418568..418576 | TCONS_00054336-exon-scaffold_242-1491911889:418568..418576 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_242 | supercontig | scaffold_242:418568..425474 - |
Blast
BLAST of TCONS_00054336 vs. Swiss-Prot (Human)
Match: DDX41 (Probable ATP-dependent RNA helicase DDX41 OS=Homo sapiens GN=DDX41 PE=1 SV=2) HSP 1 Score: 343.199 bits (879), Expect = 2.905e-112 Identity = 187/311 (60.13%), Postives = 236/311 (75.88%), Query Frame = 3
Query: 105 YVPYVPIKERKKQMLIKHRIISEL----EKQKDSGQESENEEVLKQKEKEARQAMSLLDQHHXXXXXXXXXXXXXXXXQLREEQKILESVAERKALMAAAELAKGITYEEALKTSWKPPRYISAYSEERHEKVRKKYGILAEGNDCPPPLKRFREMKFPKSILNCLKAKGITNPTPIQMQGIPVTLSGRDMIGIAFTGSGKTLVFTLPIVMFCIEQEKGLPFRKGEGPYGLLISPSRELAKQTADIIKEFVAALAKDGLPELKVLCCIGGTSMKEQAETIKHGVHIVVATPGRLMDLLNKKIMNLDICRYL 1025
YVPYVP+++R++ +L K E+Q+DSG E +E + +SLLDQH K++ + KE+ EKQL+EE+KILESVAE +ALM+ E+AKGITY++ +KTSW PPRY+ + SEERHE+VRKKY IL EG+ PPP+K F+EMKFP +IL LK KGI +PTPIQ+QGIP LSGRDMIGIAFTGSGKTLVFTLP++MFC+EQEK LPF K EGPYGL+I PSRELA+QT I++ + L +D P L+ CIGG S+KEQ ETI+HGVH++VATPGRLMDLL KK+++LDICRYL
Sbjct: 33 YVPYVPLRQRRQLLLQKLLQRRRKGAAEEEQQDSGSEPRGDE--DDIPLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYL 341
The following BLAST results are available for this feature:
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