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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054333 ID=TCONS_00054333|Name=TCONS_00054333|organism=Clytia hemisphaerica|type=transcript|length=4408bpRun BLAST on NCBI protein sequence of TCONS_00054333-protein >TCONS_00054333-protein ID=TCONS_00054333-protein|Name=TCONS_00054333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=977bp METPQNKFIDNVSELAKEIDANFVLANAALDFYPIIYCSQGFFGDVGWTRRun BLAST on NCBI transcript from alignment at scaffold_242:375017..385208- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054333 ID=TCONS_00054333|Name=TCONS_00054333|organism=Clytia hemisphaerica|type=transcript|length=10192bp|location=Sequence derived from alignment at scaffold_242:375017..385208- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_242:375017..385208- >TCONS_00054333 ID=TCONS_00054333|Name=TCONS_00054333|organism=Clytia hemisphaerica|type=CDS|length=32274bp|location=Sequence derived from alignment at scaffold_242:375017..385208- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054333 vs. Swiss-Prot (Human)
Match: KCNH1 (Potassium voltage-gated channel subfamily H member 1 OS=Homo sapiens GN=KCNH1 PE=1 SV=1) HSP 1 Score: 422.935 bits (1086), Expect = 7.118e-127 Identity = 236/717 (32.91%), Postives = 392/717 (54.67%), Query Frame = 3
Query: 441 AMETPQNKFIDNVSELAKEIDANFVLANAALDFYPIIYCSQGFFGDVGWTRNEVTTKDVYLNFMFGRQTGKKPRRLFEKGISKKAFTQVEMILYSKGGTKRWFLVTLMPVKDEHKKTSIFIVFFNYISHLKDPIAESPRRLW----KIATRVALKKPSLEYFRRHCDKKKDGEKKRRL-DVHTIKAKINYSFIPIYGLTKPQVPRHLIRHSSIGKSIWDWFILLLILYTSVMVPFLIAFETNLDIVHYL--DTFVDVMFIFDIVLTFFTTYV-ENGEIITNAKQIRRHYFRGWFLGDCFGAFPFSFVMY-------------------------AIDKKEGQ-VXXXXXXXXXXXXXXVAKVRKKIGRYMQMSAVTLGVWLLVFCLCGHWMACVWYLIGT----SWDKPGIKKHSWLFILSEIVDQPYNFTAQGDIVEGTGPDLFTVYFSALYYTMSSLTTCGFGNIAPNTAAEKFFGCGSMLLGCVLYALIFGQVTNIISQLQKSSNEFTDQVTTIKNFNKIYKMPPRVAKRFEDYVVSKWAVTKGTDADQIIKPCPRDLQADICMNIHRTVFQNNSAFTHLSEPALRALSRFFYTTRTAPGDKLINTGEEVDTVYFVADGSLEVYSGTELVGLIGPKDSFGKRLTDEDT-TKSVYDVKACSYCNIHSVSCDSVADALYLYPEEYDKIKYDLQLAFDITRQLETVTKSGDIISTEE 2474
+ PQN F++N+ + + D NFVL NA + +PI+Y + GF G+ R EV K +FM+G T K + E+++Y K T WF V + P+++E K +F+ F+ I+ K PI + + W ++ + + L+ K ++ K RL +V + + I +P Y P+ P H+I H + K+ WDW IL+L YT+++VP+ ++F+T + V +L D+ VDV+F+ DIVL F TT+V GE+I++ K IR +Y + WF+ D P+ + ++ +E Q + + LK++RL+R+ +V +K+ Y++ A L + + VF L HWMAC+WY IG D I+ +SWL+ L+ + PY F G GP +VY S+LY+TM+SLT+ GFGNIAP+T EK F M++G +LYA IFG VT I Q+ ++N + + + ++++F K+Y++P +++R DY+VS W++++G D +++++ CP+D++ADIC++++R VF+ + AF S+ LRAL+ F T APGD + + GE VD++ FV GSLEV E+V ++G D FG E T +S +V+A +YC++H + D++ L Y +L L +++ +++ K D+ EE
Sbjct: 9 GLVAPQNTFLENI--VRRSNDTNFVLGNAQIVDWPIVYSNDGFCKLSGYHRAEVMQKSSTCSFMYGELTDKDTIEKVRQTFENYEMNSFEILMYKKNRTPVWFFVKIAPIRNEQDKVVLFLCTFSDITAFKQPIEDDSCKGWGKFARLTRALTSSRGVLQQLAPSVQKGENVHKHSRLAEVLQLGSDI----LPQYKQEAPKTPPHIILHYCVFKTTWDWIILILTFYTAILVPYNVSFKTRQNNVAWLVVDSIVDVIFLVDIVLNFHTTFVGPAGEVISDPKLIRMNYLKTWFVIDLLSCLPYDVINAFENVDEVSAFMGDPGKIGFADQIPPPLEGRESQGISSLFSSLKVVRLLRLGRVARKLDHYIEYGAAVLVLLVCVFGLAAHWMACIWYSIGDYEIFDEDTKTIRNNSWLYQLAMDIGTPYQFNGSGSGKWEGGPSKNSVYISSLYFTMTSLTSVGFGNIAPSTDIEKIFAVAIMMIGSLLYATIFGNVTTIFQQMYANTNRYHEMLNSVRDFLKLYQVPKGLSERVMDYIVSTWSMSRGIDTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLILTYNLRKRI-VFRKISDVKREEE 718 The following BLAST results are available for this feature:
BLAST of TCONS_00054333 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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