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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054331 ID=TCONS_00054331|Name=TCONS_00054331|organism=Clytia hemisphaerica|type=transcript|length=4483bpRun BLAST on NCBI transcript from alignment at scaffold_242:361201..385189- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054331 ID=TCONS_00054331|Name=TCONS_00054331|organism=Clytia hemisphaerica|type=transcript|length=23989bp|location=Sequence derived from alignment at scaffold_242:361201..385189- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00054331 vs. Swiss-Prot (Human)
Match: KCNH1 (Potassium voltage-gated channel subfamily H member 1 OS=Homo sapiens GN=KCNH1 PE=1 SV=1) HSP 1 Score: 414.075 bits (1063), Expect = 1.495e-123 Identity = 228/700 (32.57%), Postives = 388/700 (55.43%), Query Frame = 2
Query: 431 TPQNKFIDNVSELAKEIDANFVLANAALDFYPIIYCSQGFFGDVGWTRNEVTTKDVYLNFMFGRQTGKKPRRLFEKGISKKAFTQVEMILYSKGGTKRWFLVTLMPVKDEHKKTSIFIVFFNYISHLKDPIAESPRRLW----KIATRVALKKPSLEYFRRHCDKKKDGEKKRRL-DVHTIKAKINYSFIPIYGLTKPQVPRHLIRHSSIGKSIWDWFILLLILYTSVMVPFLIAFETNLDIVHYL--DTFVDVMFIFDIVLTFFTTYV-ENGEIITNAKQIRRHYFRGWFLGDCFGAFPFSFVMY-------------------------AIDKKEGQ-VXXXXXXXXXXXXXXVAKVRKKIGRYMQMSAVTLGVWLLVFCLCGHWMACVWYLIGT----SWDKPGIKKHSWLFILSEIVDQPYNFTAQGDIVEGTGPDLFTVYFSALYYTMSSLTTCGFGNIAPNTAAEKFFGCGSMLLGCVLYALIFGQVTNIISQLQKSSNEFTDQIASIHNFNKIYKMPPKVAKRLEDFFIATWAVTKGTDEQEILKPCPRDLQSDLCINIHKTVFENNSAFRHLSDPALRALSRYFWTIRTAPGDKLITTGEEVNTVYFVANGSLEVYSGNDLTGLIGPDDSFGKRLTDDHT-TFSVYDVRACSYGAIHCIMCDSVKEALSLYPEENDKIKYDLQLAFDITRQL 2413
PQN F++N+ + + D NFVL NA + +PI+Y + GF G+ R EV K +FM+G T K + E+++Y K T WF V + P+++E K +F+ F+ I+ K PI + + W ++ + + L+ K ++ K RL +V + + I +P Y P+ P H+I H + K+ WDW IL+L YT+++VP+ ++F+T + V +L D+ VDV+F+ DIVL F TT+V GE+I++ K IR +Y + WF+ D P+ + ++ +E Q + + LK++RL+R+ +V +K+ Y++ A L + + VF L HWMAC+WY IG D I+ +SWL+ L+ + PY F G GP +VY S+LY+TM+SLT+ GFGNIAP+T EK F M++G +LYA IFG VT I Q+ ++N + + + S+ +F K+Y++P +++R+ D+ ++TW++++G D +++L+ CP+D+++D+C+++++ VF+ + AFR SD LRAL+ F T+ APGD + GE V+++ FV +GSLEV +++ ++G D FG + T S +VRA +Y +H I D++++ L Y + +L L +++ +++
Sbjct: 12 APQNTFLENI--VRRSNDTNFVLGNAQIVDWPIVYSNDGFCKLSGYHRAEVMQKSSTCSFMYGELTDKDTIEKVRQTFENYEMNSFEILMYKKNRTPVWFFVKIAPIRNEQDKVVLFLCTFSDITAFKQPIEDDSCKGWGKFARLTRALTSSRGVLQQLAPSVQKGENVHKHSRLAEVLQLGSDI----LPQYKQEAPKTPPHIILHYCVFKTTWDWIILILTFYTAILVPYNVSFKTRQNNVAWLVVDSIVDVIFLVDIVLNFHTTFVGPAGEVISDPKLIRMNYLKTWFVIDLLSCLPYDVINAFENVDEVSAFMGDPGKIGFADQIPPPLEGRESQGISSLFSSLKVVRLLRLGRVARKLDHYIEYGAAVLVLLVCVFGLAAHWMACIWYSIGDYEIFDEDTKTIRNNSWLYQLAMDIGTPYQFNGSGSGKWEGGPSKNSVYISSLYFTMTSLTSVGFGNIAPSTDIEKIFAVAIMMIGSLLYATIFGNVTTIFQQMYANTNRYHEMLNSVRDFLKLYQVPKGLSERVMDYIVSTWSMSRGIDTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLILTYNLRKRI 705 The following BLAST results are available for this feature:
BLAST of TCONS_00054331 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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