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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054325 ID=TCONS_00054325|Name=TCONS_00054325|organism=Clytia hemisphaerica|type=transcript|length=2281bpRun BLAST on NCBI protein sequence of TCONS_00054325-protein >TCONS_00054325-protein ID=TCONS_00054325-protein|Name=TCONS_00054325-protein|organism=Clytia hemisphaerica|type=polypeptide|length=692bp MDEEKETDHDMQGVVEENGEEKPDNEIIKTETTSEKMDSKVEESSVIEIERun BLAST on NCBI transcript from alignment at scaffold_242:289361..300557- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054325 ID=TCONS_00054325|Name=TCONS_00054325|organism=Clytia hemisphaerica|type=transcript|length=11197bp|location=Sequence derived from alignment at scaffold_242:289361..300557- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_242:289361..300557- >TCONS_00054325 ID=TCONS_00054325|Name=TCONS_00054325|organism=Clytia hemisphaerica|type=CDS|length=24948bp|location=Sequence derived from alignment at scaffold_242:289361..300557- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054325 vs. Swiss-Prot (Human)
Match: NADAP (Kanadaptin OS=Homo sapiens GN=SLC4A1AP PE=1 SV=1) HSP 1 Score: 258.84 bits (660), Expect = 4.454e-74 Identity = 189/470 (40.21%), Postives = 278/470 (59.15%), Query Frame = 2
Query: 380 EKPKQPSTASS----AKKCPLEEPPWGGVVSQDLKPPYSMTILKVGTVKDTVDLTKKSRFVFGRNDDCDVRVEHPSCSRYHAVLQYCVV----EKDLRKKGFYLYDMGSTHGTYLNKVKIKPQSYNRVRVGYQLKFGGSTRLYIVXXXXXXXXXXTDIDKMREKKRLYEQHKMEEKQKRKSKEQPLTSTNTGSRQTIXXXXXXXXXXXXXXXXXXFGEDAQEEGINLKDLFERKQDFEVKDPKKTLNGFFEREGIEFEYDMSERGSGKSTVHVAKVRLPFDTDDGEEVIAEGT-SSNKKDAVLKCATEACRLIQTYDMMTNRTREDQRVLKQRALEANDFYDSDEDSFLDRTGNIEKKRIQRKKRAGKQVKDIVETHDTXXXXXXXXXXXXXXXXXXXGLSRAAKNEGEEGGDSLDSFMSSM--SHRLDKTTEMKLKRQSAEFKKEIQRLEKMVEITKPA-LPSIDMTQS 1753
E+ + P+ SS A+ P +EPPWGG + PYS+ LK GT+ T L S +FGR CDV +EHPS SRYHAVLQ+ E D GFYLYD+GSTHGT+LNK +I P++Y RV VG+ ++FGGSTRL+I++GPEED+E E+++ + K+ +Q + EK+ +T R+ G + + +DA+E I L + + ++ F +KDPKK L GFF+REG E EY+ E+G + + +VRLP D G++++AE S KK+A+++C+ EACR++ T ++ R R K + E DFYDSD+D+FLDRTG IEKKR+ R K+AGK + + ET ++L KL + ++EL + +RL S +E DSLD+FMS M LD + KL ++ E +KE QRL+ +++I KPA +P + T++
Sbjct: 134 EQSRPPTAVSSPGGPARAPPYQEPPWGGPATA----PYSLETLKGGTILGTRSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVRFGGSTRLFILQGPEEDREAESELTVTQLKELRKQQQILLEKKMLGEDSDEEEEMDTSERKINAGSQDDEMGCTWGMGEDAVEDDAEENPIVL-EFQQEREAFYIKDPKKALQGFFDREGEELEYEFDEQG---HSTWLCRVRLPVDDSTGKQLVAEAIHSGKKKEAMIQCSLEACRILDTLGLL--RQEAVSRKRKAKNWEDEDFYDSDDDTFLDRTGLIEKKRLNRMKKAGK-IDEKPETFESLVAKLNDAERELSEISERLKASSQVLSE-SPSQDSLDAFMSEMKSGSTLDGVSRKKLHLRTFELRKEQQRLKGLIKIVKPAEIPELKKTET 591 The following BLAST results are available for this feature:
BLAST of TCONS_00054325 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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