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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054308 ID=TCONS_00054308|Name=TCONS_00054308|organism=Clytia hemisphaerica|type=transcript|length=892bp
AGAAAAATGGGTTCACAACCTAAAATAGAAATCTAATTGTATTTTAACAA
AAGATCctattgtttgaaaatttagtAATACTCGTTGaagattttcaaga
aatttcagATTGTATGTTGGGAAACGATTTTCTTCATTTCACTCGTCGTA
ACGAATTGAAGTATACTTGTTCGAGTGAGAAGCACACTAACATTAGAAAC
ATGAAGATTTAtcttttattattgtttttcgTGGCTCTGGCACACAATAT
CCATTGTAAGAACATGTTGACACCAAGGGATAGACACGACGGTATGGAAG
ATGAAATGTTCGATGAATTCGCTGAATTTATGCAAGACGAAGAAATGGCT
GATCCATCTGGTCTGTTTTGTGCTCCATTCTTTCGCTGCTCACAAATATT
GACTGATGGATACAACAAATGTCGATATTGTCTTCGTTATCCTGTTTCAG
TAAGTGGCAAAATGATGTGCAGAGTGAACGGTAGGAAGTGTGGCGATGTC
AAATCATACCCACTACCGAAAAATGACGCTTGAAGACCAACGTTTTTTTG
CAGCAAAGAACTTGAActgtaattttaaattttgaagcttTGTACAAATT
TACAATCATGGTTggaatatattgagaatttcggttattttaaagttttt
caagatttaaagttccggcgagaaagtctaTTTtaggctatctctttaat
ttaatggAATACTTCagtttgggaggggttggcagacttccatgctatat
tttgagccttattggactatttttgagcttttgggtcctcagattctaag
gtcctacttaagtctagcgttaaaactcagagttaaaactctacccttcg
aacctactttagaggacttacaaatcgattgtggtttcaaaa Run BLAST on NCBI protein sequence of TCONS_00054308-protein >TCONS_00054308-protein ID=TCONS_00054308-protein|Name=TCONS_00054308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MLGNDFLHFTRRNELKYTCSSEKHTNIRNMKIYLLLLFFVALAHNIHCKN
MLTPRDRHDGMEDEMFDEFAEFMQDEEMADPSGLFCAPFFRCSQILTDGY
NKCRYCLRYPVSVSGKMMCRVNGRKCGDVKSYPLPKNDA Run BLAST on NCBI transcript from alignment at scaffold_242:35094..37333- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054308 ID=TCONS_00054308|Name=TCONS_00054308|organism=Clytia hemisphaerica|type=transcript|length=2240bp|location=Sequence derived from alignment at scaffold_242:35094..37333- (Clytia hemisphaerica)
AGAAAAATGGGTTCACAACCTAAAATAGAAATCTAATTGTATTTTAACAA
AAGATCCTATTGTTTGAAAATTTAGTAATACTCGTTGAAGATTTTCAAGA
AATTTCAGATTGTATGTTGGGAAACGATTTTCTTCATTTCACTCGTCGTA
ACGAATTGAAGTATACTTGTTCGAGTGAGAAGCACACTAACATTAGAAAC
ATGAAGATTTATCTTTTATTATTGTTTTTCGTGGCTCTGGCACACAATAT
CCATTGTAAGTCTCTTCTATTATGCGATATACTTTTCTAAAAAGTTTTCG
TTTTCTAACATCTACTCAACAACTTCAAGTTTTCTTTTCGTCGCTAAAAA
TGACGCTTAACTTTGCATTACCATAACTGTATACAGTTGACGCTCTCTAA
TTCGATCTTCAAGGGGAATTCGATTTTCATCGAATAAGGGAGCTTATCGA
ATAAGGGAGCATCGTTCATTAAGAGTTTCTTGTTGGNTTCATCGAATAAG
GGAGCTTATCGAATAAGAGAGCATCGTTCATAAGAGTTTCTTGTTGACGG
GGACTTTAAATTTCATCGAATAAGGGAGCTTATCGAATAGTAGAACGTCG
AGTTAGAGAGCGGCAACTGTAACTGCATTACCATTCATAAACGAACTGTA
TAACTGTATTTTTCCGAGAAGATATTCAAATTGGGAAAAGAGTATTTCCA
TAAACCTTCAGTACCAAATTCAAAGCTTCTGTCTAAATTCCCTTCGTCGT
TTCATCAAAAACCATACTCAGACTTTGAGTGAGCTCAACACAAATGAAAC
ATGCTGAAAGAAAAATAGCCTACAAACCATCGTATGGATTTTATATCAAC
TAACCTTTTTAATAAAACTGCATTATGTGACTCTTGCCTCGTTTTCGAAA
GCTTCTAGTGACGTTATTACCTTGGACAGTGCTTCAAAATGAGACAAGGA
CAAAGTTCGTTATTGGTGAAATTTAGTTAAATGCCTTTCAATTCAATCTT
TCTTTACAGGTAAGAACATGTTGACACCAAGGGATAGACACGACGGTATG
GAAGATGAAATGTTCGATGAATTCGCTGAATTTATGCAAGACGAAGGTTA
GTGATTACTCGTTTCCGAGCAGATTCTGCTTACTCTGCACAACACGCATT
CGCTCTATAAATACTTGGTTCCGTCCTCCGCCCAGTTTGATTTTGGATTT
ATTGAACGAATACAACGAAATGAGCTTTTGAGCGCAGTGATTGGCTGAAG
TAAACCAATCAAAAACATTAAATCATCATAAACATTTATTAAGAGGCGGG
GGTTCTAATTGGATTGTCTTGCTGCTACTTAGATTGAAAATTTCTAAAGT
TTAAGGATTGATAAATTTCTTAAATCTGAGAAAAAAACTGAAATTCTTCA
CTAGACCTTTTGACACTTGCATAATCCTTTTCGACCGTAGTCGCGCGGGC
ATTTTTTGTCCGCTTTATCACACTAAAACCACCCCAGTCCTTTTTTCGCA
CCAATAGACAATAGAAATATGCGTCAAAAAAGAATTGGGGCCGTGGGATA
AAGCGGACAAAAAAATGCCCGCTCGACTACGGTCGGAAAGGTGTATTCAA
CAAAATTTCCTAGGCTGAAGTATTAAAACTTTTCATCATATCCGGATTCA
CTTTAAGAAAATATGTTGTTTTATATATCTCTCACCATAGAAATGGCTGA
TCCATCTGGTCTGTTTTGTGCTCCATTCTTTCGCTGCTCACAAATATTGA
CTGATGGATACAACAAATGTCGATATTGTCTTCGTTATCCTGTTTCAGTA
AGTGGCAAAATGATGTGCAGAGTGAACGGTAGGAAGTGTGGCGATGTCAA
ATCATACCCACTACCGAAAAATGACGCTTGAAGACCAACGTTTTTTTGCA
GCAAAGAACTTGAACTGTAATTTTAAATTTTGAAGCTTTGTACAAATTTA
CAATCATGGTTGGAATATATTGAGAATTTCGGTTATTTTAAAGTTTTTCA
AGATTTAAAGTTCCGGCGAGAAAGTCTATTTTAGGCTATCTCTTTAATTT
AATGGAATACTTCAGTTTGGGAGGGGTTGGCAGACTTCCATGCTATATTT
TGAGCCTTATTGGACTATTTTTGAGCTTTTGGGTCCTCAGATTCTAAGGT
CCTACTTAAGTCTAGCGTTAAAACTCAGAGTTAAAACTCTACCCTTCGAA
CCTACTTTAGAGGACTTACAAATCGATTGTGGTTTCAAAA Coding sequence (CDS) from alignment at scaffold_242:35094..37333- >TCONS_00054308 ID=TCONS_00054308|Name=TCONS_00054308|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at scaffold_242:35094..37333- (Clytia hemisphaerica)
AAATGGCTGATCCATCTGGTCTGTTTTGTGCTCCATTCTTTCGCTGCTCA
CAAATATTGACTGATGGATACAACAAATGTCGATATTGTCTTCGTTATCC
TGTTTCAGTAAGTGGCAAAATGATGTGCAGAGTGAACGGTAGGAAGTGTG
GCGATGTCAAATCATACCCACTACCGAAAAATGACGCTTGAGTAAGAACA
TGTTGACACCAAGGGATAGACACGACGGTATGGAAGATGAAATGTTCGAT
GAATTCGCTGAATTTATGCAAGACGAAGATGTTGGGAAACGATTTTCTTC
ATTTCACTCGTCGTAACGAATTGAAGTATACTTGTTCGAGTGAGAAGCAC
ACTAACATTAGAAACATGAAGATTTATCTTTTATTATTGTTTTTCGTGGC
TCTGGCACACAATATCCATTAAATGGCTGATCCATCTGGTCTGTTTTGTG
CTCCATTCTTTCGCTGCTCACAAATATTGACTGATGGATACAACAAATGT
CGATATTGTCTTCGTTATCCTGTTTCAGTAAGTGGCAAAATGATGTGCAG
AGTGAACGGTAGGAAGTGTGGCGATGTCAAATCATACCCACTACCGAAAA
ATGACGCTTGAGTAAGAACATGTTGACACCAAGGGATAGACACGACGGTA
TGGAAGATGAAATGTTCGATGAATTCGCTGAATTTATGCAAGACGAAGAT
GTTGGGAAACGATTTTCTTCATTTCACTCGTCGTAACGAATTGAAGTATA
CTTGTTCGAGTGAGAAGCACACTAACATTAGAAACATGAAGATTTATCTT
TTATTATTGTTTTTCGTGGCTCTGGCACACAATATCCATTAAATGGCTGA
TCCATCTGGTCTGTTTTGTGCTCCATTCTTTCGCTGCTCACAAATATTGA
CTGATGGATACAACAAATGTCGATATTGTCTTCGTTATCCTGTTTCAGTA
AGTGGCAAAATGATGTGCAGAGTGAACGGTAGGAAGTGTGGCGATGTCAA
ATCATACCCACTACCGAAAAATGACGCTTGAGTAAGAACATGTTGACACC
AAGGGATAGACACGACGGTATGGAAGATGAAATGTTCGATGAATTCGCTG
AATTTATGCAAGACGAAGATGTTGGGAAACGATTTTCTTCATTTCACTCG
TCGTAACGAATTGAAGTATACTTGTTCGAGTGAGAAGCACACTAACATTA
GAAACATGAAGATTTATCTTTTATTATTGTTTTTCGTGGCTCTGGCACAC
AATATCCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054308-exon-scaffold_242-1575043694:37079..37333 | TCONS_00054308-exon-scaffold_242-1575043694:37079..37333 | Clytia hemisphaerica | exon |
| TCONS_00054308-exon-scaffold_242-1575043694:36238..36324 | TCONS_00054308-exon-scaffold_242-1575043694:36238..36324 | Clytia hemisphaerica | exon |
| TCONS_00054308-exon-scaffold_242-1575043694:35094..35643 | TCONS_00054308-exon-scaffold_242-1575043694:35094..35643 | Clytia hemisphaerica | exon |
| TCONS_00054308-exon-scaffold_242-1510915933:37079..37333 | TCONS_00054308-exon-scaffold_242-1510915933:37079..37333 | Clytia hemisphaerica | exon |
| TCONS_00054308-exon-scaffold_242-1510915933:36238..36324 | TCONS_00054308-exon-scaffold_242-1510915933:36238..36324 | Clytia hemisphaerica | exon |
| TCONS_00054308-exon-scaffold_242-1510915933:35094..35643 | TCONS_00054308-exon-scaffold_242-1510915933:35094..35643 | Clytia hemisphaerica | exon |
| TCONS_00054308-exon-scaffold_242-1491911889:37079..37333 | TCONS_00054308-exon-scaffold_242-1491911889:37079..37333 | Clytia hemisphaerica | exon |
| TCONS_00054308-exon-scaffold_242-1491911889:36238..36324 | TCONS_00054308-exon-scaffold_242-1491911889:36238..36324 | Clytia hemisphaerica | exon |
| TCONS_00054308-exon-scaffold_242-1491911889:35094..35643 | TCONS_00054308-exon-scaffold_242-1491911889:35094..35643 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:35094..37333 - |
Blast
The following BLAST results are available for this feature:
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