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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054304 ID=TCONS_00054304|Name=TCONS_00054304|organism=Clytia hemisphaerica|type=transcript|length=1379bp
GTCTTAtcctatacaccttttcgactgtagccgccaattgcctcTTGGGC
ACTTTTtttcccctaaactcgatccaatccttttttgacacctttttcta
ttgtctataggtgcgaaaaaaaagaATGGGGCGGTTTTAGAGTGGTAAAA
TGGACAAATAAATGCTCACGCGGCGATTGGtggctacggttgaaaaggtg
tatcaaaatttaaacttaTGATGTGCTAGTTTTAGTTTTGGTACCAATca
ttattctaaaaaataatcaaaaaatctaTTTTCGTAAAAATTCTATTCAA
ATTCtcatttaaaaaacaatttttcagtattttcaaaCATAATTTCTGCA
AGTTCTTTAGGGTCTTCACCTCTGACAGCTGCCATAATTTCAAGAACTTG
TATAATATGACAGGGCTCATTGCGAGATTTAACACAACAACCAGCgtccc
atttttctttctttttggttTGGAATTTAGTTTTCACATACTTTGAGCCA
GCATGTGTATTTTTGACTTCGCACCAAGGAGCGTCTGTTTCAACCATTAA
TCTTTCTGACggaattgttttcaaaatttcaagattttcttcCGTTTTCA
GGGAACAACCTGTTATTCCAATGTACAAACCAAGATCAAGAAGTGTTTTT
GCTTCTTCAGCAGTTCCAGTGAAACAGTGAGCAACACCACCATTAACTTT
ATCCATATTTCGCTTATAAATATCCACAAAATCATCACCTGCATTTCTCA
TGTGAAGAAACATTGGCAATTTAGTTTCAGCAGCTAAatcaaattgtttt
tcaaaatatttcttttgagTCTCTCTTGGACAAAAATGTTCCCTATCATA
ATCTAAACCACATTCTCCAATTGCAACAACTTTATCTTTGTTCTGTGTAG
CTATTTCAAGAAGTTTTCCGTAATATTCCTCAGGTGTTGTATCTTTCTCA
AATGCATTACACCTGGTTGGATGACATCCAATGGTACAAAATAAACTCTC
ATCGGTTTTTACTAAATCAAGTGCAGCAGGTGCTTCTTCAAGATGCCCAA
CTGttatcatcatttttttcatacCAATATCTTTTGCTCTTTGCATCATG
ATAGAGAAGTCATCTTCATGAGCTTTTTTTCCATGATAAACACCATTGAA
TACTGGATCGGTCAAATTGACACCAATATCAATGAAACGATGCAGttgtt
tttcagccattttcaaaaatgttcttcttATCATTAAGTCTAAAACAAAG
GTTAAGCACtagttttaaaacttttacaaGTATTAAATGGCATGAATTGC
AACTGTGTGTTGTGTTATACACTGTAATAGGCTTTTCATCCGCTATCTTA
GATTATATACAAAATTACAGGAAAAAGTG Run BLAST on NCBI transcript from alignment at scaffold_242:24431..26149- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054304 ID=TCONS_00054304|Name=TCONS_00054304|organism=Clytia hemisphaerica|type=transcript|length=1719bp|location=Sequence derived from alignment at scaffold_242:24431..26149- (Clytia hemisphaerica)
GTCTTATCCTATACACCTTTTCGACTGTAGCCGCCAATTGCCTCTTGGGC
ACTTTTTTTCCCCTAAACTCGATCCAATCCTTTTTTGACACCTTTTTCTA
TTGTCTATAGGTGCGAAAAAAAAGAATGGGGCGGTTTTAGAGTGGTAAAA
TGGACAAATAAATGCTCACGCGGCGATTGGTGGCTACGGTTGAAAAGGTG
TATCAAAATTTAAACTTATGATGTGCTAGTTTTAGTTTTGGTACCAATCA
TTATTCTAAAAAATAATCAAAAAATCTATTTTCGTAAAAATTCTATTCAA
ATTCTCATTTAAAAAACAATTTTTCAGTATTTTCAAACATAATTTCTGCA
AGTTCTTTAGGGTCTTCACCTCTGACAGCTGCCATAATTTCAAGAACTTG
TATAATATGACAGGGCTCATTGCGAGATTTAACACAACAACCAGCGTCCC
ATTTTTCTTTCTTTTTGGTTTGGAATTTAGTTTTCACATACTTTGAGCCA
GCATGTGTATTTTTGACTTCGCACCAAGGAGCGTCTGTTTCAACCATTAA
TCTTTCTGACGGAATTGTTTTCAAAATTTCAAGATTTTCTTCCGTTTTCA
GGGAACAACCTGTTATTCCAATGTACAAACCAAGATCAAGAAGTGTTTTT
GCTTCTTCAGCAGTTCCAGTGAAACAGTGAGCAACACCACCATTAACTTT
ATCCATATTTCGCTTATAAATATCCACAAAATCATCACCTGCATTTCTCA
TGTGAAGAAACATTGGCAATTTAGTTTCAGCAGCTAAATCAAATTGTTTT
TCAAAATATTTCTTTTGAGTCTCTCTTGGACAAAAATGTTCCCTATCATA
ATCTAAACCACATTCTCCAATTGCAACAACTTTATCTTTGTTCTGTGTAG
CTATTTCAAGAAGTTTTCCGTAATATTCCTCAGGTGTTGTNGGAACAACC
TGTTATTCCTATGTACAAACCAAGATCAAGAAGTGTTTTTGCTTCTTCAG
CAGTTCCAGTGAAACAGTGAGCAACACCACCATTAACTTTATCCATATTT
CGCTTATAAATATCCACAAAATCATCACCTGCATTTCTCATGTGAAGAAA
CATTGGCAATTTAGTTTCAGCAGCTAAATCAAATTGTTTTTCAAAATATT
TCTTTTGAGTCTCTCTTGGACAGAAATGTTCCCTATCATAATCTAAACCA
CATTCTCCAATTGCAACAACTTTATCTTTGTTCTGTGTAGCTATTTCAAG
AAGTTTTCTGTAATATTCCTCAGGTGTTGTATCTTTCTCAAATGCATTAC
ACCTGGTTGGATGACATCCAATGGTACAAAATAAACTCTCATCGGTTTTT
ACTAAATCAAGTGCAGCAGGTGCTTCTTCAAGATGCCCAACTGTTATCAT
CATTTTTTTCATACCAATATCTTTTGCTCTTTGCATCATGATAGAGAAGT
CATCTTCATGAGCTTTTTTTCCATGATAAACACCATTGAATACTGGATCG
GTCAAATTGACACCAATATCAATGAAACGATGCAGTTGTTTTTCAGCCAT
TTTCAAAAATGTTCTTCTTATCATTAAGTCTAAAACAAAGGTTAAGCACT
AGTTTTAAAACTTTTACAAGTATTAAATGGCATGAATTGCAACTGTGTGT
TGTGTTATACACTGTAATAGGCTTTTCATCCGCTATCTTAGATTATATAC
AAAATTACAGGAAAAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054304-exon-scaffold_242-1575043694:25217..26149 | TCONS_00054304-exon-scaffold_242-1575043694:25217..26149 | Clytia hemisphaerica | exon |
| TCONS_00054304-exon-scaffold_242-1575043694:24431..24876 | TCONS_00054304-exon-scaffold_242-1575043694:24431..24876 | Clytia hemisphaerica | exon |
| TCONS_00054304-exon-scaffold_242-1510915933:25217..26149 | TCONS_00054304-exon-scaffold_242-1510915933:25217..26149 | Clytia hemisphaerica | exon |
| TCONS_00054304-exon-scaffold_242-1510915933:24431..24876 | TCONS_00054304-exon-scaffold_242-1510915933:24431..24876 | Clytia hemisphaerica | exon |
| TCONS_00054304-exon-scaffold_242-1491911889:25217..26149 | TCONS_00054304-exon-scaffold_242-1491911889:25217..26149 | Clytia hemisphaerica | exon |
| TCONS_00054304-exon-scaffold_242-1491911889:24431..24876 | TCONS_00054304-exon-scaffold_242-1491911889:24431..24876 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:24431..26149 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016788 | hydrolase activity, acting on ester bonds |
| GO:0016888 | endodeoxyribonuclease activity, producing 5'-phosphomonoesters |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016888 |
endodeoxyribonuclease activity, producing 5'-phosphomonoesters |
| molecular_function |
GO:0016788 |
hydrolase activity, acting on ester bonds |
Blast
BLAST of TCONS_00054304 vs. Swiss-Prot (Human)
Match: TATD1 (Putative deoxyribonuclease TATDN1 OS=Homo sapiens GN=TATDN1 PE=1 SV=2) HSP 1 Score: 353.214 bits (905), Expect = 1.209e-118 Identity = 170/284 (59.86%), Postives = 215/284 (75.70%), Query Frame = -2
Query: 338 RFIDIGVNLTDPVFNGVYHGKKAHEDDFSIMMQRAKDIGMKKMMITVGHLEEAPAALDLVKTDESLFCTIGCHPTRCNAFEKDTTPEEYYGKLLEIATQNKDKVVAIGECGLDYDREHFCPRETQKKYFEKQFDLAAETKLPMFLHMRNAGDDFVDIYKRNMDKVNGGVAHCFTGTAEEAKTLLDLGLYIGITGCSLKTEENLEILKTIPSERLMVETDAPWCEVKNTHAGSXXXXXXXXXXXXXKWDAGCCVKSRNEPCHIIQVLEIMAAVRGEDPKELAEIM 1189
+FIDIG+NLTDP+F G+Y G + H+DD ++ RA +IG+KK MIT G+L+++ AL L +T+ F T+GCHPTRC FEK+ P+ Y +LL +A NK KVVAIGECGLD+DR FCP++TQ KYFEKQF+L+ +TKLPMFLH RN+ +F+DI KRN D+ GGV H F GT E A L+DL LYIG GCSLKTE NLE+LK+IPSE+LM+ETDAPWC VK+THAGS + K+KW++G C+K RNEPCHIIQ+LEIM+AVR EDP ELA +
Sbjct: 5 KFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALHLAQTNGMFFSTVGCHPTRCGEFEKNN-PDLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDRCVGGVVHSFDGTKEAAAALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGS--KYIRTAFPTKKKWESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTL 285
The following BLAST results are available for this feature:
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