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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054269 ID=TCONS_00054269|Name=TCONS_00054269|organism=Clytia hemisphaerica|type=transcript|length=1923bpRun BLAST on NCBI transcript from alignment at scaffold_242:1526556..1537595+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054269 ID=TCONS_00054269|Name=TCONS_00054269|organism=Clytia hemisphaerica|type=transcript|length=11040bp|location=Sequence derived from alignment at scaffold_242:1526556..1537595+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00054269 vs. Swiss-Prot (Human)
Match: SVEP1 (Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Homo sapiens GN=SVEP1 PE=1 SV=3) HSP 1 Score: 112.079 bits (279), Expect = 3.002e-25 Identity = 75/257 (29.18%), Postives = 116/257 (45.14%), Query Frame = 3
Query: 342 LSCGDPGPIYNGTIIGKANFNNGGIIRYKCNKCYDRKGPSTLMCSRWGHWSGDVPKCLPKEC--PPLVVSDNEKTLTGKRYGFEYQFTCEAGTVLIGRAITRCMCNGRWSSKPPVCRVPMATVPPTTQPPIHEGYCPPPEPLHNGIIQAVRFGTEEKYQVGDRVYFLCNIRYRLIGPTYRECGWHGKWD-HDNPYCQIEYCSRLFPPIDGEVMGSNQVGS---FMEFRCHDGYTMVGANKTLCLRNGQWSKITPKCK 1094
+ CG+P I NG G +N++ G ++ Y CNK + KG C G WS +P C P C PP V + + TG+ + E ++ C G +G + C N W S+ P+ VP+ C P P+ NG ++ E ++VG +V F CN Y L+G + C GKW+ NP C C PP+ + ++ + + F C +G+ + G + CL + QW+ P CK
Sbjct: 2144 VRCGEPPSIMNGYASG-SNYSFGAMVAYSCNKGFYIKGEKKSTCEATGQWSSPIPTCHPVSCGEPPKVENGFLEHTTGRIFESEVRYQCNPGYKSVGSPVFVCQANRHWHSESPLMCVPLD--------------CGKPPPIQNGFMKG------ENFEVGSKVQFFCNEGYELVGDSSWTCQKSGKWNKKSNPKCMPAKCPE--PPLLENQLVLKELTTEVGVVTFSCKEGHVLQGPSVLKCLPSQQWNDSFPVCK 2377 HSP 2 Score: 109.768 bits (273), Expect = 1.674e-24 Identity = 72/241 (29.88%), Postives = 102/241 (42.32%), Query Frame = 3
Query: 390 KANFNNGGIIRYKCNKCYDRKGPSTLMCSRWGHWSGDVPKCLPKECP-PLVVSDNEKTLTGKRYGFEYQFTCEAGTVLIGRAITRCMCNGRWSSKPPVCRVPMATVPPTTQPPIHEGYCPPPEPLHNGIIQAVRFGTEEKYQVGDRVYFLCNIRYRLIGPTYRECGWHGKWDHDNPYCQIEYCSRLFPPI--DGEVMGSN-QVGSFMEFRCHDGYTMVGANKTLCLRNGQWSKITPKCKPA 1100
+NF G ++ Y CN Y+ G L+C G W+G P C+ EC P + T G Q++C+ G +L G + C+ N +WS P C C P P+ NG I+ Y +Y+ C+ Y L G R C WD D P C CS PP+ +G+V G +E+ C++G+ + GA +CL NG WS TP C P
Sbjct: 2672 SSNFLYGTMVSYTCNPGYELLGNPVLICQEDGTWNGSAPSCISIECDLPTAPENGFLRFTETSMGSAVQYSCKPGHILAGSDLRLCLENRKWSGASPRCEAIS---------------CKKPNPVMNGSIKG------SNYTYLSTLYYECDPGYVLNGTERRTCQDDKNWDEDEPICIPVDCSS--PPVSANGQVRGDEYTFQKEIEYTCNEGFLLEGARSRVCLANGSWSGATPDCVPV 2889 HSP 3 Score: 103.219 bits (256), Expect = 1.832e-22 Identity = 79/259 (30.50%), Postives = 115/259 (44.40%), Query Frame = 3
Query: 339 VLSCGDPGPIYNGTIIGKANFNNGGIIRYKCNKCYDRKGPSTLMCSRWGHWSGDVPKCLPKECPPLVVSDNEKTLTGKRYGF--EYQFTCEAGTVLIGRAITRCMCNGRWSSKPPVCRVPMATVPPTTQPPIHEGYCPPPEPLHNGIIQAVRFGTEEKYQVGDRVYFLCNIRYRLIGPTYRECGWHGKWDHDNPYCQIEYCSRLFPPID---GEVMGSNQV-GSFMEFRCHDGYTMVGANKTLCLRNGQWSKITPKCKP 1097
+SC P P+ NG+I G +N+ + Y+C+ Y G C +W D P C+P +C VS N + + G Y F E ++TC G +L G C+ NG WS P C VP+ C P L NG+ + + +G ++ V F C+ Y L G C G WD + P C+ C PP D G G + + G ++++C GY + G + CL NG WS +P C P
Sbjct: 2772 AISCKKPNPVMNGSIKG-SNYTYLSTLYYECDPGYVLNGTERRTCQDDKNWDEDEPICIPVDCSSPPVSANGQ-VRGDEYTFQKEIEYTCNEGFLLEGARSRVCLANGSWSGATPDC-VPVR--------------CATPPQLANGVTEGLDYGFMKE------VTFHCHEGYILHGAPKLTCQSDGNWDAEIPLCKPVNCG---PPEDLAHGFPNGFSFIHGGHIQYQCFPGYKLHGNSSRRCLSNGSWSGSSPSCLP 3004 HSP 4 Score: 100.523 bits (249), Expect = 1.130e-21 Identity = 71/255 (27.84%), Postives = 105/255 (41.18%), Query Frame = 3
Query: 339 VLSCGDPGPIYNGTIIGKANFNNGGIIRYKCNKCYDRKGPSTLMCSRWGHWSGDVPKCLPKECP-PLVVSDNEKTLTGKRYGFEYQFTCEAGTVLIGRAITRCMCNGRWSSKPPVCRVPMATVPPTTQPPIHEGYCPPPEPLHNGIIQAVRFGTEEKYQVGDRVYFLCNIRYRLIGPTYRECGWHGKWDHDNPYCQIEYCSRLFPPIDGEVMGSN-QVGSFMEFRCHDGYTMVGANKTLCLRNGQWSKITPKCKP 1097
++ C P I G I + + G ++Y C + +G ST +C G WS +P+C+P ECP P + + + G Y +TC+ G L+G T C NG W P C+ C P+ + NG G V + CN +RL GP+ C G WD D P C +C P +G V G++ G+ + + C G+ + G C +G WS P C P
Sbjct: 2378 IVLCTPPPLISFGVPIPSSALHFGSTVKYSCVGGFFLRGNSTTLCQPDGTWSSPLPECVPVECPQPEEIPNGIIDVQGLAYLSTALYTCKPGFELVGNTTTLCGENGHWLGGKPTCKAIE---------------CLKPKEILNGKFSYTDL------HYGQTVTYSCNRGFRLEGPSALTCLETGDWDVDAPSCNAIHCDSPQPIENGFVEGADYSYGAIIIYSCFPGFQVAGHAMQTCEESG-WSSSIPTCMP 2610 HSP 5 Score: 99.3673 bits (246), Expect = 2.817e-21 Identity = 76/299 (25.42%), Postives = 123/299 (41.14%), Query Frame = 3
Query: 342 LSCGDPGPIYNGTIIGKANFNNGGIIRYKCNKCYDRKGPSTLMCSRWGHWSGDV-PKCLPKECPPLVVSDNEKTLTGKRYGFEY---QFTCEAGTVLIGRAITRCMCNGRWSSKPPVCRVPMATVPPTT-------QPPIHEGY-------------------------------------CPPPEPLHNGIIQAVRFGTEEKYQVGDRVYFLCNIRYRLIGPTYRECGWHGKWDHDNPYCQIEYCSRLFPPIDGEVMGSN-QVGSFMEFRCHDGYTMVGANKTLCLRNGQWSKITPKC 1091
L CG P PI NG + G+ NF G +++ CN+ Y+ G S+ C + G W+ PKC+P +CP + +N+ L K E F+C+ G VL G ++ +C+ + +W+ PVC++ + T PP +H G CP PE + NGII + + C + L+G T CG +G W P C+ C + ++G+ ++ G + + C+ G+ + G + CL G W P C
Sbjct: 2262 LDCGKPPPIQNGFMKGE-NFEVGSKVQFFCNEGYELVGDSSWTCQKSGKWNKKSNPKCMPAKCPEPPLLENQLVL--KELTTEVGVVTFSCKEGHVLQGPSVLKCLPSQQWNDSFPVCKIVLCTPPPLISFGVPIPSSALHFGSTVKYSCVGGFFLRGNSTTLCQPDGTWSSPLPECVPVECPQPEEIPNGIIDV------QGLAYLSTALYTCKPGFELVGNTTTLCGENGHWLGGKPTCKAIECLKPKEILNGKFSYTDLHYGQTVTYSCNRGFRLEGPSALTCLETGDWDVDAPSC 2551 HSP 6 Score: 95.1301 bits (235), Expect = 6.249e-20 Identity = 74/280 (26.43%), Postives = 109/280 (38.93%), Query Frame = 3
Query: 339 VLSCGDPGPIYNGTIIGKANFNNGGIIRYKCNKCYDRKGPSTLMCSRWGHWSGDVPKCLPKECP-PLVVSDNEKTLTGKRYGFEYQFTCEAGTVLIGRAITRCMCNGRWSSKPPVCRVPMATVPPTTQPPIHEGYCPPPEPLHNGIIQAVRFGTEEKYQVGDRVYFLCNIRYRLIGPTYRECGWHGKWDHDNPYCQIEYCSRLFPPIDGEV---MGSNQVGSFMEFRCHDGYTMVGANKTLCLRNGQWSKITPKCKPACSVHEC---PSNKKCVLDAITQ 1157
+SCG P NG I A F G + Y+CNK Y G C WS P C P +C P +++ + L+G Y ++C+ G L G +I C +G W PP C H +C P + + +I T + + V + C Y L G EC GKW + C C PPI G + C DGY++ ++ LC G+W + P C H C PS +L+++++
Sbjct: 1844 AVSCGKPAIPENGCIEELA-FTFGSKVTYRCNKGYTLAGDKESSCLANSSWSHSPPVCEPVKCSSPENINNGKYILSGLTYLSTASYSCDTGYSLQGPSIIECTASGIWDRAPPAC---------------HLVFCGEPPAIKDAVI------TGNNFTFRNTVTYTCKEGYTLAGLDTIECLADGKWSRSDQQCLAVSCDE--PPIVDHASPETAHRLFGDIAFYYCSDGYSLADNSQLLCNAQGKWVPPEGQDMPRCIAHFCEKPPSVSYSILESVSK 2099 HSP 7 Score: 95.1301 bits (235), Expect = 6.580e-20 Identity = 67/257 (26.07%), Postives = 107/257 (41.63%), Query Frame = 3
Query: 342 LSCGDPGPIYNGTIIGKANFNNGGIIRYKCNKCYDRKGPSTLMCSRWGHWSGDVPKCLPKECPPLVVSDN----EKTLTGKRYGFEYQFTCEAGTVLIGRAITRCMCNGRWSSKPPVCRVPMATVPPTTQPPIHEGYCPPPEPLHNG--IIQAVRFGTEEKYQVGDRVYFLCNIRYRLIGPTYRECGWHGKWDHDNPYCQIEYCSRLFPPIDGEVMGSN-QVGSFMEFRCHDGYTMVGANKTLCLRNGQWSKITPKC 1091
+ C PG NG G+ + G + + C + Y G + + C G W+ +P C C + +N E T +G + + C G L G + C+ N WS PPVC P+ C PE ++NG I+ + + + Y C+ Y L GP+ EC G WD P C + +C D + G+N + + + C +GYT+ G + CL +G+WS+ +C
Sbjct: 1787 IKCKAPGNPENGHSSGEI-YTVGAEVTFSCQEGYQLMGVTKITCLESGEWNHLIPYCKAVSCGKPAIPENGCIEELAFT---FGSKVTYRCNKGYTLAGDKESSCLANSSWSHSPPVCE------------PVK---CSSPENINNGKYILSGLTYLSTASYS--------CDTGYSLQGPSIIECTASGIWDRAPPACHLVFCGEPPAIKDAVITGNNFTFRNTVTYTCKEGYTLAGLDTIECLADGKWSRSDQQC 2016 HSP 8 Score: 83.5741 bits (205), Expect = 2.054e-16 Identity = 79/298 (26.51%), Postives = 120/298 (40.27%), Query Frame = 3
Query: 339 VLSCGDPGPIYNGTIIGKANFNNGGIIRYKCNKCYDRKGPSTLMCSRWGHWSGDVPKCLPKECPPLVVSDNEKTLTGKR-YGFEYQFTCEAGTVLIGRAITRCMCNGRWSSKPPVCRVPMATVPPTTQ--PPIHEGYCPPPEPLHNGIIQAVRFGTEEKYQVGDRVYFLCNIRYRLIGPTYRECGWHGKWDHD--NPYCQIEYCSRLFPPIDGEVMGSN-QVGSFMEFRCHDGYTMVGANKTLCLRNGQWSKITPKCKPACSVHECPSNKKCVLDAITQRPTCECNLKNKC-PNYRSA 1211
++ CG+P I + I G NF + Y C + Y G T+ C G WS +CL C + D+ T R +G + C G L + C G+W VPP Q P +C P + I+++V ++ K+ G V F C + L EC G+W+ + C C ++G GSN G+ + + C+ G+ + G K+ C GQWS P C P S E P + L+ T R E ++ +C P Y+S
Sbjct: 1960 LVFCGEPPAIKDAVITGN-NFTFRNTVTYTCKEGYTLAGLDTIECLADGKWSRSDQQCLAVSCDEPPIVDHASPETAHRLFGDIAFYYCSDGYSLADNSQLLCNAQGKW-------------VPPEGQDMPRCIAHFCEKPPSVSYSILESV---SKAKFAAGSVVSFKCMEGFVLNTSAKIECMRGGQWNPSPMSIQCIPVRCGEPPSIMNGYASGSNYSFGAMVAYSCNKGFYIKGEKKSTCEATGQWSSPIPTCHPV-SCGEPPKVENGFLEHTTGR-IFESEVRYQCNPGYKSV 2238 The following BLAST results are available for this feature:
BLAST of TCONS_00054269 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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