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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054265 ID=TCONS_00054265|Name=TCONS_00054265|organism=Clytia hemisphaerica|type=transcript|length=836bp
CTTTTTGATGTTTGTACAGTGGGACATGGGAGCCTTCAGAATTATATTTC
AAGAGATTTTTTGAGCGCTTGAAAcggtgaaaaaaaaaagagaaaaagta
aaGGAGAAATTGGGGCGACTCTCAAGTAAAATGGAGAGATTCTACACGAA
ATTTCTTTCAGTATATTTGTTGACGATAATGATTGTACAGAGCGTCGTGG
TTTCAAAAGGCCACCCAGTATCTAAAAACTTGATGCAGGTCAAACTTGAA
ATCAACAAAGCCGCCATTCCAGTTATCGATCCGCCCAAACAAACCACCCA
TTACACACCACATTTCAAAATCAAACGATCGATGTATTGTGAAATGTTGT
GCTCGCATTTCGAATATTGTCTCGTACGAACAATGACTTTCTCAAGGTGT
ATTTCACCTCAAGGGTGTAGTTGTATTGGATTTCTTatgttgaaaaagaa
ataaaagactGATTTCGATTTTTAGTGGGGATATTttattttaaccctat
tcaacctaggcttttaggggcgttcaccccttaacttttgatctagttgg
tctttttagataaaatttggcacacaagatccttgtcacgtaaggtaact
tttgacaaaaaaattttttaatgacgtcactcatcatgcccaaagtgagc
aaaaaccaaaaatttcctttgttcttataaatacctattgtattctaaca
aaagctttagaaaaaagttgcctgagtttaaaatgcttattttatcctaa
atattcaataaattacggtttaaacgatatatttgacattaaaaataaat
ttgtattggaaaagtgtcaatttttgtgacacctta Run BLAST on NCBI protein sequence of TCONS_00054265-protein >TCONS_00054265-protein ID=TCONS_00054265-protein|Name=TCONS_00054265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MERFYTKFLSVYLLTIMIVQSVVVSKGHPVSKNLMQVKLEINKAAIPVID
PPKQTTHYTPHFKIKRSMYCEMLCSHFEYCLVRTMTFSRCISPQGCSCIG
FLMLKKK Run BLAST on NCBI transcript from alignment at scaffold_242:1377754..1379681+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054265 ID=TCONS_00054265|Name=TCONS_00054265|organism=Clytia hemisphaerica|type=transcript|length=1928bp|location=Sequence derived from alignment at scaffold_242:1377754..1379681+ (Clytia hemisphaerica)
CTTTTTGATGTTTGTACAGTGGGACATGGGAGCCTTCAGAATTATATTTC
AAGAGATTTTTTGAGCGCTTGAAAcggtgaaaaaaaaaagagaaaaagta
aaGGAGAAATTGGGGCGACTCTCAAGTAAAATGGAGAGATTCTACACGAA
ATTTCTTTCAGTATATTTGTTGACGATAATGATTGTACAGAGCGTCGTGG
TTTCAAAAGGTAATCTCTGGAACTTGACACCGGATCGCAAGTCATAATAA
GAAATATCCCCATTAATGCCTaatggcaaaaaaactttttaattgtAAGA
CCAATTTAACTTGTTGTTATTCGAgcagatcgttagaaaaatatgggtcg
gtcggttggtCGATCGGTCGGTCggtgggtcggtcggtaaaataagaata
aatttttcatttatcagggttggtaaggtaccgaaaatatttttcaaaaa
atatctggatcaaaaattccCTTTTTNATATCCCCATTAATGCCCAATGG
caagaaaactttttaattgTAAGACCAATTTAACTTGTTGTTATTCGAGC
AGATCGTTAGAAAAacatgggtcggtcggtcggtcggtcggtcggtcggt
tggtaaaataagaataaatttttcatttatcagggttggtaaggtaccga
aaatatttctcaaaaaatatctggatcaaaaattccctttttttcaattt
cttgaattaatattcaggtttattcaaatttaattcttacaaataactag
tgtgtaaaatatattgtagtggaaattcaatattattattttcttgattt
tagcgaaaatagggtcggtcgggcccgtagaacaacaaatttattctaaa
attggtctcgccttaagACCagtttgtattttacagaatatATTGTCACT
TTTAACAGAGATCGGCTCTAAGGTTTTTAAAGATTCTATCAGAGaaggtt
tgaaaaattttcaacatctggaaggtttagattacagAATTTTGAAAGAC
CGCGTCAAGGATGTTGCAGCGGGAGCCTTGGACCCCAGCTCTTGTTTTCA
GGGATTGGCGGaaccaaccgaaatattttcatGTCTAGGTGTATAGGTAG
TTGAACCTGATTGGGGATGTGACACATCGTTTGAATTTTATCCCTCTTCA
GTGGGAAGTTGGCCTGctcttttagagctttagcgtgggcggccgccaat
ctgCCATCGTTATATCAAATAATGCTATTATATTCAGTTATATTAGCCCT
TTATTATAGATTAAGTGACTCTACTTACAATATCTTTCTTTCTTATTACA
GGCCACCCAGTATCTAAAAACTTGATGCAGGTCAAACTTGAAATCAACAA
AGCCGCCATTCCAGTTATCGATCCGCCCAAACAAACCACCCATTACACAC
CACATTTCAAAATCAAACGATCGATGTATTGTGAAATGTTGTGCTCGCAT
TTCGAATATTGTCTCGTACGAACAATGACTTTCTCAAGGTGTATTTCACC
TCAAGGGTGTAGTTGTATTGGATTTCTTatgttgaaaaagaaataaaaga
ctGATTTCGATTTTTAGTGGGGATATTttattttaaccctattcaaccta
ggcttttaggggcgttcaccccttaacttttgatctagttggtcttttta
gataaaatttggcacacaagatccttgtcacgtaaggtaacttttgacaa
aaaaattttttaatgacgtcactcatcatgcccaaagtgagcaaaaacca
aaaatttcctttgttcttataaatacctattgtattctaacaaaagcttt
agaaaaaagttgcctgagtttaaaatgcttattttatcctaaatattcaa
taaattacggtttaaacgatatatttgacattaaaaataaatttgtattg
gaaaagtgtcaatttttgtgacacctta Coding sequence (CDS) from alignment at scaffold_242:1377754..1379681+ >TCONS_00054265 ID=TCONS_00054265|Name=TCONS_00054265|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_242:1377754..1379681+ (Clytia hemisphaerica)
ATGGAGAGATTCTACACGAAATTTCTTTCAGTATATTTGTTGACGATAAT
GATTGTACAGAGCGTCGTGGTTTCAAAAGGCCACCCAGTATCTAAAAACT
TGATGCAGGTCAAACTTGAAATCAACAAAGCCGCCATTCCAGTTATCGAT
CCGCCCAAACAAACCACCCATTACACACCACATTTCAAAATCAAACGATC
GATGTATTGTGAAATGTTGTGCTCGCATTTCGAATATTGTCTCGTACGAA
CAATGACTTTCTCAAGGTGTATTTCACCTCAAGGGTGTAGTTGTATTGGA
TTTCTTatgttgaaaaagaaataaATGGAGAGATTCTACACGAAATTTCT
TTCAGTATATTTGTTGACGATAATGATTGTACAGAGCGTCGTGGTTTCAA
AAGGCCACCCAGTATCTAAAAACTTGATGCAGGTCAAACTTGAAATCAAC
AAAGCCGCCATTCCAGTTATCGATCCGCCCAAACAAACCACCCATTACAC
ACCACATTTCAAAATCAAACGATCGATGTATTGTGAAATGTTGTGCTCGC
ATTTCGAATATTGTCTCGTACGAACAATGACTTTCTCAAGGTGTATTTCA
CCTCAAGGGTGTAGTTGTATTGGATTTCTTatgttgaaaaagaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054265-exon-scaffold_242-1491911889:1377754..1377962 | TCONS_00054265-exon-scaffold_242-1491911889:1377754..1377962 | Clytia hemisphaerica | exon |
| TCONS_00054265-exon-scaffold_242-1510915933:1377754..1377962 | TCONS_00054265-exon-scaffold_242-1510915933:1377754..1377962 | Clytia hemisphaerica | exon |
| TCONS_00054265-exon-scaffold_242-1575043694:1377754..1377962 | TCONS_00054265-exon-scaffold_242-1575043694:1377754..1377962 | Clytia hemisphaerica | exon |
| TCONS_00054265-exon-scaffold_242-1491911889:1379055..1379681 | TCONS_00054265-exon-scaffold_242-1491911889:1379055..1379681 | Clytia hemisphaerica | exon |
| TCONS_00054265-exon-scaffold_242-1510915933:1379055..1379681 | TCONS_00054265-exon-scaffold_242-1510915933:1379055..1379681 | Clytia hemisphaerica | exon |
| TCONS_00054265-exon-scaffold_242-1575043694:1379055..1379681 | TCONS_00054265-exon-scaffold_242-1575043694:1379055..1379681 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1377754..1379681 + |
Blast
The following BLAST results are available for this feature:
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