|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054263 ID=TCONS_00054263|Name=TCONS_00054263|organism=Clytia hemisphaerica|type=transcript|length=1415bp GAAAAATCTACCTTCTTTTAGGGGATAACAAACAATCAATGTTGTTCATG TTTTAAGGAAAAACAATGGATCAAAACCTAGATGATTCAAAAAGTCTCGC TCATCCACACGAGCCAGCAAGATGGTGGTTCCAGATTTCCATACCATTTG AAGTATGTCTTAAATCAACTCTCCTGGACACACTTTACAATCCGCAATTT GGTGATTTCCCAAAATCATGTAAAGCTGTTGagttgaatgaaattcttgt tGGCATTCAAGAGAAAGTGACGCATTCTTTCAACCATCAATCAGACATCC TTGCCAAAAATGTAGAGCCGAGTTCGCTGGTCGATACTAAACCAATCATT GCGAGATTAGATGTCATGGCTATATCACTTCTCATCTTGGAGAAATCAAA GTTAAAACCTAAGCTACTTTCAATTGTTAAAGAGTCAAAGGACGATTCAA TTATTGACCAATATCTTAACATGACCAGCTCAATAATGGCTGTGTTGGGT CTCAAAGCAAGAATTTTGTCAGCATCTCTGACTCTTCATGAAGACGAATT CCTTACGtataaaaaaatgttggtcGATATTTTACGAAGGCTCTCATACG GTGATTTTGAGTATTTTAACTCTTTATTCAATGATGATGGTGAAGATCTA ACATCTTTTGATGGATTGAAACTTGAATTATTAGAAGAGAAACAAAAACA TCTGAGGAACTTGAAAATGCATGATCAAGGTTACTTTTTGTTTacaactt ttccaaattcgagCGAAAGCCTGGATGCTATCACTAGACAATCacttgaa gtcgaaaaaatATTAGAGAGTGTGAAGGAAGCTTTAAAACGTAAAGTGCT AACAAAAATGGAAGATGACATAACCGATCAATCATCCAATGAAAATCGTC AACTTCCAATCCAACAGCAGGACAGCCATACTAAAGACAAGTGTCAAACT GATCAATCTTCGAACCCGAACCAAAAAATTCCAATCCAAGTTAAAGACAA GCATCAAACTGATCAATCTTCGAACCAGAACCACAAACTTCCAATTCAAC AGCAGGACAGCCATACTAAAGACACAGATCAAACTGATCAATCTTCGAAC CAGGACCACAAACCTCCAATCCAACAGCAGAGCAGCCATACTAAAGACAA AGATCAAACTGATCAATCTTCGAATCAAAACCACAAACTTCCGATTCAAA AGCAGCCACCAAATACAGCCACCAAATCTCCGATGCTCTCGCcacatcaa aataaatttgatatctcaaagaaaagcCAGCAATTGAAAAGAGAGACGAA GGAAAGATATAACACCATAGACACGCCCTACCATAGTGGCGTTTCCAATC TTCACGCCCCTATCTCATCCAAACGTGATGAAATCATTGTCGACTTATCC ATAATTTCATCTGAT Run BLAST on NCBI protein sequence of TCONS_00054263-protein >TCONS_00054263-protein ID=TCONS_00054263-protein|Name=TCONS_00054263-protein|organism=Clytia hemisphaerica|type=polypeptide|length=450bp
MDQNLDDSKSLAHPHEPARWWFQISIPFEVCLKSTLLDTLYNPQFGDFPK SCKAVELNEILVGIQEKVTHSFNHQSDILAKNVEPSSLVDTKPIIARLDV MAISLLILEKSKLKPKLLSIVKESKDDSIIDQYLNMTSSIMAVLGLKARI LSASLTLHEDEFLTYKKMLVDILRRLSYGDFEYFNSLFNDDGEDLTSFDG LKLELLEEKQKHLRNLKMHDQGYFLFTTFPNSSESLDAITRQSLEVEKIL ESVKEALKRKVLTKMEDDITDQSSNENRQLPIQQQDSHTKDKCQTDQSSN PNQKIPIQVKDKHQTDQSSNQNHKLPIQQQDSHTKDTDQTDQSSNQDHKP PIQQQSSHTKDKDQTDQSSNQNHKLPIQKQPPNTATKSPMLSPHQNKFDI SKKSQQLKRETKERYNTIDTPYHSGVSNLHAPISSKRDEIIVDLSIISSD Run BLAST on NCBI transcript from alignment at scaffold_242:1313300..1317577+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054263 ID=TCONS_00054263|Name=TCONS_00054263|organism=Clytia hemisphaerica|type=transcript|length=4278bp|location=Sequence derived from alignment at scaffold_242:1313300..1317577+ (Clytia hemisphaerica) GAAAAATCTACCTTCTTTTAGGGGTAAGTATGTACATTGTTATGATCTAT
TTGGATTCATTTCCTATGTGACAACCCTAGCCCAGTGGGGGATATTGTTT
CGATTGTTCCAAGCTTATTAAATACAGTGGAgcaatggttttggagtgca
attttttacattgaatttcgaatggggatgagatcagactggagtcgttt
ataatgcgtgtaatacaagGCGTTACagtatatgataatacgattattgt
tacggttgttattgttattgtataaactaaaattgttttctccattactt
tttgctttatttctactttactttatttctttttagcttgctagactagg
atAACATCAAAGTTAATTTCCTAGTGAGGctaaaattgtagggtatttct
TCGAACGGGACCAAATGTTGAacagattttccagtgggttggGGGCCCCA
CcggatctgtgacacagggatgttgTGTCAGTGTGTTATTGGGGATTGGT
TTGAAAAGGTATACACCTATACTCCGTATACCTATACTGTCATTGGGATA
ATGTATTTTTTCAGGCACTATATTTTCATATAGCCTAGATATCCAAGCTT
TAAATCtcagaaaaaagaattttgccTCAACATACATACAAAGTCCTGAA
ATTACAGCTTGCAAGtacaaacccatgtttccaaaactgtCCCAGCCAAC
CCAAGGCAGCTAAATAGAAATTAATCAAAAGCACCCTtgcaagatctaaa
actatttaaaacatccggCAAAAATGAGaccaaagtccataaacaaGTTC
GCATGTATCACTATggccaaccatgttttcttggaaaatgaactcaCCTC
AACTgtgttcttctttttcatgttttcatgaaACAAAAAGCTGTATCTTC
ACTAGCTTTACCTAGGATTACCTTATTTTTGTTGCAGAATTTCTCCGCGC
TATGTAAATCGGCCCTTACGGCTTTATCAGAGTGAGTGCAAACAAGCAAG
CCGCATTctgatttgaaaatacaaaGCGCTCTAGGAAGACCAGGCGGTAA
ACCTTAGCATAAcataaaaaactagactgtgaaatagtttaccaCTTGGA
TATCTAGGCtattcattttcattgttttcgatAGTGGAAAGAAaagcttt
ttatttaaaagttgTCAACAATCATCCAGATGACAGTGGTCGGACTATAC
TAAGGGGATTTCCATTTAAAAACCACTTTAGTCTCTCTTGTTCCATCAAG
ACTGGATCTCAACATTTTCAATAATCTGGGCTAAGTGGGATTTTATACTA
TGACAACAAGTCCCATTTTTCGAATCTTTGAGACTCGGCTGAGGTTCGAA
ACCACAACCTTACGCAGTGTAGCTGAATTCTCTACCTTCNTCGGCTGAGG
TTCGAAACCACAAACTTACGCAGTGTAGCTGAATTCTCTACCTTCATGGT
AACCTCATTCCCGTGTATCACAGGCTTTAATTGCattatcagtaagcatc
aaaaagccgaTAATACGTAGGGAACAGGGTTGTCTTCATGCAACTTACAC
GTTGAAATGCTTATAGTAAAACAAGACATTTAATCTCTCTTGTAGGATAA
CAAACAATCAATGTTGTTCATGTTTTAAGGAAAAACAATGGATCAAAACC
TAGATGATTCAAAAAGTCTCGCTCATCCACACGAGCCAGCAAGATGGTGG
TTCCAGATTTCCATACCATTTGAAGTATGTCTTAAATCAACTCTCCTGGA
CACACTTTACAATCCGCAATTTGGTGATTTCCCAAAATCATGTAAAGCTG
TTGagttgaatgaaattcttgttGGCATTCAAGAGAAAGTGACGCATTCT
TTCAACCATCAATCAGACATCCTTGCCAAAAATGTAGAGCCGAGTTCGCT
GGTCGATACTAAACCAATCATTGCGAGATTAGATGTCATGGCTATATCAC
TTCTCATCTTGGAGAAATCAAAGTTAAAACCTAAGCTACTTTCAATTGTT
AAAGAGTCAAAGGACGATTCAATTATTGACCAATATCTTAACATGACCAG
CTCAATAATGGCTGTGTTGGGTCTCAAAGCAAGAATTTTGTCAGCATCTC
TGACTCTTCATGAAGACGAATTCCTTACGtataaaaaaatgttggtcGAT
ATTTTACGAAGGCTCTCATACGGTGATTTTGAGTATTTTAACTCTTTATT
CAATGATGATGGTGAAGATCTAACATCTTTTGATGGATTGAAACTTGAAT
TATTAGAAGAGAAACAAAAACATCTGAGGAACTTGAAAATGCATGATCAA
GGTTACTTTTTGTTTacaacttttccaaattcgagCGAAAGCCTGGATGC
TATCACTAGACAATCacttgaagtcgaaaaaatATTAGAGAGTGTGAAGG
AAGCTTTAAAACGTAAAGTGCTAACAAAAATGGAAGATGACATAACCGAT
CAATCATCCAATGAAAATCGTCAACTTCCAATCCAACAGCAGGACAGCCA
TACTAAAGACAAGTGTCAAACTGATCAATCTTCGAACCCGAACCAAAAAA
TTCCAATCCAAGTTAAAGACAAGCGTCAAACTGATCAATCTTCGAACCAA
AATCACAAACTTCCAATCCAACAGCAGGACAGCCAAGTTAAGGACAAACG
TCAAACTGATCAATCTTCGAACCAGAACCACAAACTTCCAATCCAACAGC
AGGACAGCCAAGTTAAGGACAAACGTCAAACTGATCAATCTTCGAACCAG
AACCACAAACTTCCAATCCAACAGCAGGGCAGCTATACTAAGGACAAACG
TCAAACTGATCAATCTTCGAACCAAAATCACAAACTTTCAATTCAACAGC
AGGACAGCCATATTAAAGACAAAGATCAAACTGATCAATCTTCGAACCAG
AGCCACAAACTTCCAATCCAACAGCAGGACAGCTATACTAAAGACAAAGA
TCAAACTGATCAATCTCCGAACCAGAACCACAAACTTCCAATTCAACAGC
AAGACAGCCATACTAAAGACACAGATCAAACTGATCAATCTTCGAACCAG
AACCACAAACTTCCAATCCAACAGCAGGACAGCCATACTAAAGACACAGA
TCAAACTGATCAATCTTCGAACCAGAGNGAAAACTatttttccacaaaat
acccctaaaatacgtccaaaattagttcaagtgttctattgggtacagat
tcaaagatatctagcaacaaaaaaactttttgtgaaggaaaataagagaa
aaatttcaaaaactatctaNTAAAGACACAGATCAAACTGATCAATCTTC
GAACCAGAGCCACAAACTTTCAATTCAACAGCAGGACAGCCATACTAAAG
ACAAAGATCAAACTGATCAATCTTCGAACCAGAACCACAAACTTCCAATT
CAACAGCAGGACAGCCATACTAAAGACACAGATCAAACTGATCAATCTTC
GAACCAGGACCACAAACCTCCAATCCAACAGCAGAGCAGCCATACTAAAG
ACAAAGATCAAACTGATCAATCTTCGAATCAAAACCACAAACTTCCGATT
CAAAAGCAGCCACCAAATACAGCCACCAAATCTCCGATGCTCTCGCcaca
tcaaaataaatttgGTAAAATAATTTACGAATCATTGTTTTTTAGTACTC
GTAcccccctgtctcacagcccagatggcacttttttcttcagtggtGGA
TAAAAAcccctattgaaatcccaatagggatagaattttattgttccaag
gggatcagtggggatggttttggagtgccatttttagacattgattttcg
aggagggatgaaatcaaagtcaattttccagcggggctgaaatttcaggg
tattttcccaccggggaccaaatttttgccagattttccagtgggtatgg
ggtcccagtgggtctgtgacacaggggtgtactcGTGTGACATGATAAGA
TAAGATACAATAGAACAAAATTCTTCATTTCCTCTCATTTAGCTGATGTA
TTACACATTTCTTATTTAGCACTTagcttttgttttttcatttgatgATA
AGACATCGGTTTGAGTCTCAGGTTCCTTCtactttttcttcaatttgtta
actttctccattttttcatttagatatctcaaagaaaagcCAGCAATTGA
AAAGAGAGACGAAGGAAAGATATAACACCATAGACACGCCCTACCATAGT
GGCGTTTCCAATCTTCACGCCCCTATCTCATCCAAACGTGATGAAATCAT
TGTCGACTTATCCATAATTTCATCTGAT Coding sequence (CDS) from alignment at scaffold_242:1313300..1317577+ >TCONS_00054263 ID=TCONS_00054263|Name=TCONS_00054263|organism=Clytia hemisphaerica|type=CDS|length=4050bp|location=Sequence derived from alignment at scaffold_242:1313300..1317577+ (Clytia hemisphaerica) ATGGATCAAAACCTAGATGATTCAAAAAGTCTCGCTCATCCACACGAGCC AGCAAGATGGTGGTTCCAGATTTCCATACCATTTGAAGTATGTCTTAAAT CAACTCTCCTGGACACACTTTACAATCCGCAATTTGGTGATTTCCCAAAA TCATGTAAAGCTGTTGagttgaatgaaattcttgttGGCATTCAAGAGAA AGTGACGCATTCTTTCAACCATCAATCAGACATCCTTGCCAAAAATGTAG AGCCGAGTTCGCTGGTCGATACTAAACCAATCATTGCGAGATTAGATGTC ATGGCTATATCACTTCTCATCTTGGAGAAATCAAAGTTAAAACCTAAGCT ACTTTCAATTGTTAAAGAGTCAAAGGACGATTCAATTATTGACCAATATC TTAACATGACCAGCTCAATAATGGCTGTGTTGGGTCTCAAAGCAAGAATT TTGTCAGCATCTCTGACTCTTCATGAAGACGAATTCCTTACGtataaaaa aatgttggtcGATATTTTACGAAGGCTCTCATACGGTGATTTTGAGTATT TTAACTCTTTATTCAATGATGATGGTGAAGATCTAACATCTTTTGATGGA TTGAAACTTGAATTATTAGAAGAGAAACAAAAACATCTGAGGAACTTGAA AATGCATGATCAAGGTTACTTTTTGTTTacaacttttccaaattcgagCG AAAGCCTGGATGCTATCACTAGACAATCacttgaagtcgaaaaaatATTA GAGAGTGTGAAGGAAGCTTTAAAACGTAAAGTGCTAACAAAAATGGAAGA TGACATAACCGATCAATCATCCAATGAAAATCGTCAACTTCCAATCCAAC AGCAGGACAGCCATACTAAAGACAAGTGTCAAACTGATCAATCTTCGAAC CCGAACCAAAAAATTCCAATCCAAGTTAAAGACAAGCATCAAACTGATCA ATCTTCGAACCAGAACCACAAACTTCCAATTCAACAGCAGGACAGCCATA CTAAAGACACAGATCAAACTGATCAATCTTCGAACCAGGACCACAAACCT CCAATCCAACAGCAGAGCAGCCATACTAAAGACAAAGATCAAACTGATCA ATCTTCGAATCAAAACCACAAACTTCCGATTCAAAAGCAGCCACCAAATA CAGCCACCAAATCTCCGATGCTCTCGCcacatcaaaataaatttgatatc tcaaagaaaagcCAGCAATTGAAAAGAGAGACGAAGGAAAGATATAACAC CATAGACACGCCCTACCATAGTGGCGTTTCCAATCTTCACGCCCCTATCT CATCCAAACGTGATGAAATCATTGTCGACTTATCCATAATTTCATCTGAT ATGGATCAAAACCTAGATGATTCAAAAAGTCTCGCTCATCCACACGAGCC AGCAAGATGGTGGTTCCAGATTTCCATACCATTTGAAGTATGTCTTAAAT CAACTCTCCTGGACACACTTTACAATCCGCAATTTGGTGATTTCCCAAAA TCATGTAAAGCTGTTGagttgaatgaaattcttgttGGCATTCAAGAGAA AGTGACGCATTCTTTCAACCATCAATCAGACATCCTTGCCAAAAATGTAG AGCCGAGTTCGCTGGTCGATACTAAACCAATCATTGCGAGATTAGATGTC ATGGCTATATCACTTCTCATCTTGGAGAAATCAAAGTTAAAACCTAAGCT ACTTTCAATTGTTAAAGAGTCAAAGGACGATTCAATTATTGACCAATATC TTAACATGACCAGCTCAATAATGGCTGTGTTGGGTCTCAAAGCAAGAATT TTGTCAGCATCTCTGACTCTTCATGAAGACGAATTCCTTACGtataaaaa aatgttggtcGATATTTTACGAAGGCTCTCATACGGTGATTTTGAGTATT TTAACTCTTTATTCAATGATGATGGTGAAGATCTAACATCTTTTGATGGA TTGAAACTTGAATTATTAGAAGAGAAACAAAAACATCTGAGGAACTTGAA AATGCATGATCAAGGTTACTTTTTGTTTacaacttttccaaattcgagCG AAAGCCTGGATGCTATCACTAGACAATCacttgaagtcgaaaaaatATTA GAGAGTGTGAAGGAAGCTTTAAAACGTAAAGTGCTAACAAAAATGGAAGA TGACATAACCGATCAATCATCCAATGAAAATCGTCAACTTCCAATCCAAC AGCAGGACAGCCATACTAAAGACAAGTGTCAAACTGATCAATCTTCGAAC CCGAACCAAAAAATTCCAATCCAAGTTAAAGACAAGCATCAAACTGATCA ATCTTCGAACCAGAACCACAAACTTCCAATTCAACAGCAGGACAGCCATA CTAAAGACACAGATCAAACTGATCAATCTTCGAACCAGGACCACAAACCT CCAATCCAACAGCAGAGCAGCCATACTAAAGACAAAGATCAAACTGATCA ATCTTCGAATCAAAACCACAAACTTCCGATTCAAAAGCAGCCACCAAATA CAGCCACCAAATCTCCGATGCTCTCGCcacatcaaaataaatttgatatc tcaaagaaaagcCAGCAATTGAAAAGAGAGACGAAGGAAAGATATAACAC CATAGACACGCCCTACCATAGTGGCGTTTCCAATCTTCACGCCCCTATCT CATCCAAACGTGATGAAATCATTGTCGACTTATCCATAATTTCATCTGAT ATGGATCAAAACCTAGATGATTCAAAAAGTCTCGCTCATCCACACGAGCC AGCAAGATGGTGGTTCCAGATTTCCATACCATTTGAAGTATGTCTTAAAT CAACTCTCCTGGACACACTTTACAATCCGCAATTTGGTGATTTCCCAAAA TCATGTAAAGCTGTTGagttgaatgaaattcttgttGGCATTCAAGAGAA AGTGACGCATTCTTTCAACCATCAATCAGACATCCTTGCCAAAAATGTAG AGCCGAGTTCGCTGGTCGATACTAAACCAATCATTGCGAGATTAGATGTC ATGGCTATATCACTTCTCATCTTGGAGAAATCAAAGTTAAAACCTAAGCT ACTTTCAATTGTTAAAGAGTCAAAGGACGATTCAATTATTGACCAATATC TTAACATGACCAGCTCAATAATGGCTGTGTTGGGTCTCAAAGCAAGAATT TTGTCAGCATCTCTGACTCTTCATGAAGACGAATTCCTTACGtataaaaa aatgttggtcGATATTTTACGAAGGCTCTCATACGGTGATTTTGAGTATT TTAACTCTTTATTCAATGATGATGGTGAAGATCTAACATCTTTTGATGGA TTGAAACTTGAATTATTAGAAGAGAAACAAAAACATCTGAGGAACTTGAA AATGCATGATCAAGGTTACTTTTTGTTTacaacttttccaaattcgagCG AAAGCCTGGATGCTATCACTAGACAATCacttgaagtcgaaaaaatATTA GAGAGTGTGAAGGAAGCTTTAAAACGTAAAGTGCTAACAAAAATGGAAGA TGACATAACCGATCAATCATCCAATGAAAATCGTCAACTTCCAATCCAAC AGCAGGACAGCCATACTAAAGACAAGTGTCAAACTGATCAATCTTCGAAC CCGAACCAAAAAATTCCAATCCAAGTTAAAGACAAGCATCAAACTGATCA ATCTTCGAACCAGAACCACAAACTTCCAATTCAACAGCAGGACAGCCATA CTAAAGACACAGATCAAACTGATCAATCTTCGAACCAGGACCACAAACCT CCAATCCAACAGCAGAGCAGCCATACTAAAGACAAAGATCAAACTGATCA ATCTTCGAATCAAAACCACAAACTTCCGATTCAAAAGCAGCCACCAAATA CAGCCACCAAATCTCCGATGCTCTCGCcacatcaaaataaatttgatatc tcaaagaaaagcCAGCAATTGAAAAGAGAGACGAAGGAAAGATATAACAC CATAGACACGCCCTACCATAGTGGCGTTTCCAATCTTCACGCCCCTATCT CATCCAAACGTGATGAAATCATTGTCGACTTATCCATAATTTCATCTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00054263-exon-scaffold_242-1491911889:1313300..1313322 | TCONS_00054263-exon-scaffold_242-1491911889:1313300..1313322 | Clytia hemisphaerica | exon |
TCONS_00054263-exon-scaffold_242-1510915933:1313300..1313322 | TCONS_00054263-exon-scaffold_242-1510915933:1313300..1313322 | Clytia hemisphaerica | exon |
TCONS_00054263-exon-scaffold_242-1575043694:1313300..1313322 | TCONS_00054263-exon-scaffold_242-1575043694:1313300..1313322 | Clytia hemisphaerica | exon |
TCONS_00054263-exon-scaffold_242-1491911889:1314895..1315873 | TCONS_00054263-exon-scaffold_242-1491911889:1314895..1315873 | Clytia hemisphaerica | exon |
TCONS_00054263-exon-scaffold_242-1510915933:1314895..1315873 | TCONS_00054263-exon-scaffold_242-1510915933:1314895..1315873 | Clytia hemisphaerica | exon |
TCONS_00054263-exon-scaffold_242-1575043694:1314895..1315873 | TCONS_00054263-exon-scaffold_242-1575043694:1314895..1315873 | Clytia hemisphaerica | exon |
TCONS_00054263-exon-scaffold_242-1491911889:1316656..1316913 | TCONS_00054263-exon-scaffold_242-1491911889:1316656..1316913 | Clytia hemisphaerica | exon |
TCONS_00054263-exon-scaffold_242-1510915933:1316656..1316913 | TCONS_00054263-exon-scaffold_242-1510915933:1316656..1316913 | Clytia hemisphaerica | exon |
TCONS_00054263-exon-scaffold_242-1575043694:1316656..1316913 | TCONS_00054263-exon-scaffold_242-1575043694:1316656..1316913 | Clytia hemisphaerica | exon |
TCONS_00054263-exon-scaffold_242-1491911889:1317423..1317577 | TCONS_00054263-exon-scaffold_242-1491911889:1317423..1317577 | Clytia hemisphaerica | exon |
TCONS_00054263-exon-scaffold_242-1510915933:1317423..1317577 | TCONS_00054263-exon-scaffold_242-1510915933:1317423..1317577 | Clytia hemisphaerica | exon |
TCONS_00054263-exon-scaffold_242-1575043694:1317423..1317577 | TCONS_00054263-exon-scaffold_242-1575043694:1317423..1317577 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_242 | supercontig | scaffold_242:1313300..1317577 + |
Blast
The following BLAST results are available for this feature:
|