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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054262 ID=TCONS_00054262|Name=TCONS_00054262|organism=Clytia hemisphaerica|type=transcript|length=2343bp
gtcagattaaaaaaaatctatgtAATCTATCTAATGTCTCTATTCTTGAC
TGATATACCGCTCTACCGATGGTATAGAGTACTTTCTTGAATCGCAAGTC
AGATTTGCAAATATGATATACTTCAGTATATGATTTGAATGAGTAAGAAA
AATCTACCTTCTTTTAGGGGATAACAAACAATCAATGTTGTTCATGTTTT
AAGGAAAAACAATGGATCAAAACCTAGATGATTCAAAAAGTCTCGCTCAT
CCACACGAGCCAGCAAGATGGTGGTTCCAGATTTCCATACCATTTGAAGT
ATGTCTTAAATCAACTCTCCTGGACACACTTTACAATCCGCAATTTGGTG
ATTTCCCAAAATCATGTAAAGCTGTTGagttgaatgaaattcttgttGGC
ATTCAAGAGAAAGTGACGCATTCTTTCAACCATCAATCAGACATCCTTGC
CAAAAATGTAGAGCCGAGTTCGCTGGTCGATACTAAACCAATCATTGCGA
GATTAGATGTCATGGCTATATCACTTCTCATCTTGGAGAAATCAAAGTTA
AAACCTAAGCTACTTTCAATTGTTAAAGAGTCAAAGGACGATTCAATTAT
TGACCAATATCTTAACATGACCAGCTCAATAATGGCTGTGTTGGGTCTCA
AAGCAAGAATTTTGTCAGCATCTCTGACTCTTCATGAAGACGAATTCCTT
ACGtataaaaaaatgttggtcGATATTTTACGAAGGCTCTCATACGGTGA
TTTTGAGTATTTTAACTCTTTATTCAATGATGATGGTGAAGATCTAACAT
CTTTTGATGGATTGAAACTTGAATTATTAGAAGAGAAACAAAAACATCTG
AGGAACTTGAAAATGCATGATCAAGGTTACTTTTTGTTTacaacttttcc
aaattcgagCGAAAGCCTGGATGCTATCACTAGACAATCacttgaagtcg
aaaaaatATTAGAGAGTGTGAAGGAAGCTTTAAAACGTAAAGTGCTAACA
AAAATGGAAGATGACATAACCGATCAATCATCCAATGAAAATCGTCAACT
TCCAATCCAACAGCAGGACAGCCATACTAAAGACAAGTGTCAAACTGATC
AATCTTCGAACCCGAACCAAAAAATTCCAATCCAAGTTAAAGACAAGCGT
CAAACTGATCAATCTTCGAACCAAAATCACAAACTTCCAATCCAACAGCA
GGACAGCCAAGTTAAGGACAAACGTCAAACTGATCAATCTTCGAACCAGA
ACCACAAACTTCCAATCCAACAGCAGGACAGCCAAGTTAAGGACAAACGT
CAAACTGATCAATCTTCGAACCAGAACCACAAACTTCCAATCCAACAGCA
GGGCAGCTATACTAAGGACAAACGTCAAACTGATCAATCTTCGAACCAAA
ATCACAAACTTTCAATTCAACAGCAGGACAGCCATATTAAAGACAAAGAT
CAAACTGATCAATCTTCGAACCAGAGCCACAAACTTCCAATCCAACAGCA
GGACAGCTATACTAAAGACAAAGATCAAACTGATCAATCTCCGAACCAGA
ACCACAAACTTCCAATTCAACAGCAAGACAGCCATACTAAAGACACAGAT
CAAACTGATCAATCTTCGAACCAGAACCACAAACTTCCAATCCAACAGCA
GGACAGCCATACTAAAGACACAGATCAAACTGATCAATCTTCGAACCAGA
GNGAAAACTatttttccacaaaatacccctaaaatacgtccaaaattagt
tcaagtgttctattgggtacagattcaaagatatctagcaacaaaaaaac
tttttgtgaaggaaaataagagaaaaatttcaaaaactatctaNTAAAGA
CACAGATCAAACTGATCAATCTTCGAACCAGAGCCACAAACTTTCAATTC
AACAGCAGGACAGCCATACTAAAGACAAAGATCAAACTGATCAATCTTCG
AACCAGAACCACAAACTTCCAATTCAACAGCAGGACAGCCATACTAAAGA
CACAGATCAAACTGATCAATCTTCGAACCAGGACCACAAACCTCCAATCC
AACAGCAGAGCAGCCATACTAAAGACAAAGATCAAACTGATCAATCTTCG
AATCAAAACCACAAACTTCCGATTCAAAAGCAGCCACCAAATACAGCCAC
CAAATCTCCGATGCTCTCGCcacatcaaaataaatttgatatctcaaaga
aaagcCAGCAATTGAAAAGAGAGACGAAGGAAAGATATAACACCATAGAC
ACGCCCTACCATAGTGGCGTTTCCAATCTTCACGCCCCTATCTCATCCAA
ACGTGATGAAATCATTGTCGACTTATCCATAATTTCATCTGAT Run BLAST on NCBI transcript from alignment at scaffold_242:1313154..1317577+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054262 ID=TCONS_00054262|Name=TCONS_00054262|organism=Clytia hemisphaerica|type=transcript|length=4424bp|location=Sequence derived from alignment at scaffold_242:1313154..1317577+ (Clytia hemisphaerica)
gtcagattaaaaaaaatctatgtAATCTATCTAATGTCTCTATTCTTGAC
TGATATACCGCTCTACCGATGGTATAGAGTACTTTCTTGAATCGCAAGTC
AGATTTGCAAATATGATATACTTCAGTATATGATTTGAATGAGTAAGAAA
AATCTACCTTCTTTTAGGGGTAAGTATGTACATTGTTATGATCTATTTGG
ATTCATTTCCTATGTGACAACCCTAGCCCAGTGGGGGATATTGTTTCGAT
TGTTCCAAGCTTATTAAATACAGTGGAgcaatggttttggagtgcaattt
tttacattgaatttcgaatggggatgagatcagactggagtcgtttataa
tgcgtgtaatacaagGCGTTACagtatatgataatacgattattgttacg
gttgttattgttattgtataaactaaaattgttttctccattactttttg
ctttatttctactttactttatttctttttagcttgctagactaggatAA
CATCAAAGTTAATTTCCTAGTGAGGctaaaattgtagggtatttctTCGA
ACGGGACCAAATGTTGAacagattttccagtgggttggGGGCCCCACcgg
atctgtgacacagggatgttgTGTCAGTGTGTTATTGGGGATTGGTTTGA
AAAGGTATACACCTATACTCCGTATACCTATACTGTCATTGGGATAATGT
ATTTTTTCAGGCACTATATTTTCATATAGCCTAGATATCCAAGCTTTAAA
TCtcagaaaaaagaattttgccTCAACATACATACAAAGTCCTGAAATTA
CAGCTTGCAAGtacaaacccatgtttccaaaactgtCCCAGCCAACCCAA
GGCAGCTAAATAGAAATTAATCAAAAGCACCCTtgcaagatctaaaacta
tttaaaacatccggCAAAAATGAGaccaaagtccataaacaaGTTCGCAT
GTATCACTATggccaaccatgttttcttggaaaatgaactcaCCTCAACT
gtgttcttctttttcatgttttcatgaaACAAAAAGCTGTATCTTCACTA
GCTTTACCTAGGATTACCTTATTTTTGTTGCAGAATTTCTCCGCGCTATG
TAAATCGGCCCTTACGGCTTTATCAGAGTGAGTGCAAACAAGCAAGCCGC
ATTctgatttgaaaatacaaaGCGCTCTAGGAAGACCAGGCGGTAAACCT
TAGCATAAcataaaaaactagactgtgaaatagtttaccaCTTGGATATC
TAGGCtattcattttcattgttttcgatAGTGGAAAGAAaagctttttat
ttaaaagttgTCAACAATCATCCAGATGACAGTGGTCGGACTATACTAAG
GGGATTTCCATTTAAAAACCACTTTAGTCTCTCTTGTTCCATCAAGACTG
GATCTCAACATTTTCAATAATCTGGGCTAAGTGGGATTTTATACTATGAC
AACAAGTCCCATTTTTCGAATCTTTGAGACTCGGCTGAGGTTCGAAACCA
CAACCTTACGCAGTGTAGCTGAATTCTCTACCTTCNTCGGCTGAGGTTCG
AAACCACAAACTTACGCAGTGTAGCTGAATTCTCTACCTTCATGGTAACC
TCATTCCCGTGTATCACAGGCTTTAATTGCattatcagtaagcatcaaaa
agccgaTAATACGTAGGGAACAGGGTTGTCTTCATGCAACTTACACGTTG
AAATGCTTATAGTAAAACAAGACATTTAATCTCTCTTGTAGGATAACAAA
CAATCAATGTTGTTCATGTTTTAAGGAAAAACAATGGATCAAAACCTAGA
TGATTCAAAAAGTCTCGCTCATCCACACGAGCCAGCAAGATGGTGGTTCC
AGATTTCCATACCATTTGAAGTATGTCTTAAATCAACTCTCCTGGACACA
CTTTACAATCCGCAATTTGGTGATTTCCCAAAATCATGTAAAGCTGTTGa
gttgaatgaaattcttgttGGCATTCAAGAGAAAGTGACGCATTCTTTCA
ACCATCAATCAGACATCCTTGCCAAAAATGTAGAGCCGAGTTCGCTGGTC
GATACTAAACCAATCATTGCGAGATTAGATGTCATGGCTATATCACTTCT
CATCTTGGAGAAATCAAAGTTAAAACCTAAGCTACTTTCAATTGTTAAAG
AGTCAAAGGACGATTCAATTATTGACCAATATCTTAACATGACCAGCTCA
ATAATGGCTGTGTTGGGTCTCAAAGCAAGAATTTTGTCAGCATCTCTGAC
TCTTCATGAAGACGAATTCCTTACGtataaaaaaatgttggtcGATATTT
TACGAAGGCTCTCATACGGTGATTTTGAGTATTTTAACTCTTTATTCAAT
GATGATGGTGAAGATCTAACATCTTTTGATGGATTGAAACTTGAATTATT
AGAAGAGAAACAAAAACATCTGAGGAACTTGAAAATGCATGATCAAGGTT
ACTTTTTGTTTacaacttttccaaattcgagCGAAAGCCTGGATGCTATC
ACTAGACAATCacttgaagtcgaaaaaatATTAGAGAGTGTGAAGGAAGC
TTTAAAACGTAAAGTGCTAACAAAAATGGAAGATGACATAACCGATCAAT
CATCCAATGAAAATCGTCAACTTCCAATCCAACAGCAGGACAGCCATACT
AAAGACAAGTGTCAAACTGATCAATCTTCGAACCCGAACCAAAAAATTCC
AATCCAAGTTAAAGACAAGCGTCAAACTGATCAATCTTCGAACCAAAATC
ACAAACTTCCAATCCAACAGCAGGACAGCCAAGTTAAGGACAAACGTCAA
ACTGATCAATCTTCGAACCAGAACCACAAACTTCCAATCCAACAGCAGGA
CAGCCAAGTTAAGGACAAACGTCAAACTGATCAATCTTCGAACCAGAACC
ACAAACTTCCAATCCAACAGCAGGGCAGCTATACTAAGGACAAACGTCAA
ACTGATCAATCTTCGAACCAAAATCACAAACTTTCAATTCAACAGCAGGA
CAGCCATATTAAAGACAAAGATCAAACTGATCAATCTTCGAACCAGAGCC
ACAAACTTCCAATCCAACAGCAGGACAGCTATACTAAAGACAAAGATCAA
ACTGATCAATCTCCGAACCAGAACCACAAACTTCCAATTCAACAGCAAGA
CAGCCATACTAAAGACACAGATCAAACTGATCAATCTTCGAACCAGAACC
ACAAACTTCCAATCCAACAGCAGGACAGCCATACTAAAGACACAGATCAA
ACTGATCAATCTTCGAACCAGAGNGAAAACTatttttccacaaaataccc
ctaaaatacgtccaaaattagttcaagtgttctattgggtacagattcaa
agatatctagcaacaaaaaaactttttgtgaaggaaaataagagaaaaat
ttcaaaaactatctaNTAAAGACACAGATCAAACTGATCAATCTTCGAAC
CAGAGCCACAAACTTTCAATTCAACAGCAGGACAGCCATACTAAAGACAA
AGATCAAACTGATCAATCTTCGAACCAGAACCACAAACTTCCAATTCAAC
AGCAGGACAGCCATACTAAAGACACAGATCAAACTGATCAATCTTCGAAC
CAGGACCACAAACCTCCAATCCAACAGCAGAGCAGCCATACTAAAGACAA
AGATCAAACTGATCAATCTTCGAATCAAAACCACAAACTTCCGATTCAAA
AGCAGCCACCAAATACAGCCACCAAATCTCCGATGCTCTCGCcacatcaa
aataaatttgGTAAAATAATTTACGAATCATTGTTTTTTAGTACTCGTAc
ccccctgtctcacagcccagatggcacttttttcttcagtggtGGATAAA
AAcccctattgaaatcccaatagggatagaattttattgttccaagggga
tcagtggggatggttttggagtgccatttttagacattgattttcgagga
gggatgaaatcaaagtcaattttccagcggggctgaaatttcagggtatt
ttcccaccggggaccaaatttttgccagattttccagtgggtatggggtc
ccagtgggtctgtgacacaggggtgtactcGTGTGACATGATAAGATAAG
ATACAATAGAACAAAATTCTTCATTTCCTCTCATTTAGCTGATGTATTAC
ACATTTCTTATTTAGCACTTagcttttgttttttcatttgatgATAAGAC
ATCGGTTTGAGTCTCAGGTTCCTTCtactttttcttcaatttgttaactt
tctccattttttcatttagatatctcaaagaaaagcCAGCAATTGAAAAG
AGAGACGAAGGAAAGATATAACACCATAGACACGCCCTACCATAGTGGCG
TTTCCAATCTTCACGCCCCTATCTCATCCAAACGTGATGAAATCATTGTC
GACTTATCCATAATTTCATCTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054262-exon-scaffold_242-1491911889:1313154..1313322 | TCONS_00054262-exon-scaffold_242-1491911889:1313154..1313322 | Clytia hemisphaerica | exon |
| TCONS_00054262-exon-scaffold_242-1510915933:1313154..1313322 | TCONS_00054262-exon-scaffold_242-1510915933:1313154..1313322 | Clytia hemisphaerica | exon |
| TCONS_00054262-exon-scaffold_242-1575043694:1313154..1313322 | TCONS_00054262-exon-scaffold_242-1575043694:1313154..1313322 | Clytia hemisphaerica | exon |
| TCONS_00054262-exon-scaffold_242-1491911889:1314895..1316913 | TCONS_00054262-exon-scaffold_242-1491911889:1314895..1316913 | Clytia hemisphaerica | exon |
| TCONS_00054262-exon-scaffold_242-1510915933:1314895..1316913 | TCONS_00054262-exon-scaffold_242-1510915933:1314895..1316913 | Clytia hemisphaerica | exon |
| TCONS_00054262-exon-scaffold_242-1575043694:1314895..1316913 | TCONS_00054262-exon-scaffold_242-1575043694:1314895..1316913 | Clytia hemisphaerica | exon |
| TCONS_00054262-exon-scaffold_242-1491911889:1317423..1317577 | TCONS_00054262-exon-scaffold_242-1491911889:1317423..1317577 | Clytia hemisphaerica | exon |
| TCONS_00054262-exon-scaffold_242-1510915933:1317423..1317577 | TCONS_00054262-exon-scaffold_242-1510915933:1317423..1317577 | Clytia hemisphaerica | exon |
| TCONS_00054262-exon-scaffold_242-1575043694:1317423..1317577 | TCONS_00054262-exon-scaffold_242-1575043694:1317423..1317577 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1313154..1317577 + |
Blast
The following BLAST results are available for this feature:
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