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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054247 ID=TCONS_00054247|Name=TCONS_00054247|organism=Clytia hemisphaerica|type=transcript|length=383bp
AATTAATCAAATTAAACATTCCATCATTATAAAATCTGTTATTGTAATCA
TTAAAAGTTCATTGAGCTTCAAGTCAAGATGATTTTATCATTGGCGTTAG
TACCACTGGCATTCTTTGTTTCTGTCTCTACAGCTTGCAGAGATTTGTAC
CATGATTGCAGCAAAATCAAACAACATTGCAGCCCAAATTATGAATGGAT
GATGCTGAACTGTGTAAAGAATGTATGTAGTCATTCCTATTTCTCTCAAC
AATGGTCCGataaaaaatcgataaaaaatcgataaaaaagcggttttcgt
ctaacaagCTAGTAAAGAGTGAGCTTGACGCGCAATATTTTTAACAATCT
GTGAGACCGGTGATTTGAAACCTGACTCGCTAA Run BLAST on NCBI transcript from alignment at scaffold_242:1099074..1102093+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054247 ID=TCONS_00054247|Name=TCONS_00054247|organism=Clytia hemisphaerica|type=transcript|length=3020bp|location=Sequence derived from alignment at scaffold_242:1099074..1102093+ (Clytia hemisphaerica)
AATTAATCAAATTAAACATTCCATCATTATAAAATCTGTTATTGTAATCA
TTAAAAGTTCATTGAGCTTCAAGTCAAGATGATTTTATCATTGGCGTTAG
TACCACTGGCATTCTTTGTTTCTGTCTCTACAGGTACGTATGAGCATTTG
TAcagccccttctcacagacccactgggacccatTCCTACCGAAAAAATT
AtcgaaatatcgtccccagtggaaaatgaTTCTCTAATGGGCTTTTTCca
gaaaacaagtgatactttgatggacctacctggattatgcatttaacacg
tttataattgatatctacgtgacgtgaccattaNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttgagcagaaaaaac
atctatctcataaaaaaaattgagtaatttgactaagaacatcgatgtat
gcttattaatagtgattcttatagataagcATGCGTTTtctgagccaaca
aaatttttttacaaaaatttgcttgagccatcttatacctatgatggtac
cctactttcgtgcaaaaaatcagaaaaaattaatgatccaatttttcaca
aagtccaaaaaacccgtttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
tcagaaaaaactaatgagccaatctcgagaaaagctggtaactaacggac
ggacggacaaaggttaatttataggacctccaccggggtaggtccaaaaa
ccgtataccccttgttgaggaggtccaaacTTTTTTTGCTGCAAATGCTG
TACACCCCTGGAATTCCAGCACCAGGCAATCTTCGGTTTAACATCCTCTG
GAATTCTGGATTTTTTAAGACTTAAAAaattacccccatggaattccagt
tacttttgacatatttttgtaCATCCAATGGAATTTCATGACATGCTTAA
ACCTtaccccttggaacggaaatggacctcctcaaaaGGGGGTAtacagt
ttttttctggaaaaacccaatttttgtccccgctgaaaataatcagataa
ggaAGTCCTaaatgcaaaatattgtgcttttttcatccccactgaatttt
ctggttcaaaaacaaaggatttgaaatcctcagccataaaaaaaacatgg
aaACATCAATTCCCATTGATTTTTAGTCCACTATTTTTATCCTACTGACT
GAAAAAAATCTCACCGGGTCTATAAAAAGGGGGTGTAATATTCAGGATTT
GGGCAAATCTAATTAGCTTGAGCGTAAGATTAAATGCAAGAATAAGTATA
TCTCTACTTCTCCATGCTTTTTTGATTGGAAATACTTTAGACCACGAAAT
GTTATATCTTTCTTTCTAAGCTTGCAGAGATTTGTACCATGATTGCAGCA
AAATCAAACAACATTGCAGCCCAAATTATGAATGGATGATGCTGAACTGT
GTAAAGAATGTATGTAGTCATTCCTATTTCTCTCAACAATGGTCCGataa
aaaatcgataaaaaatcgataaaaaagcggttttcgtctaacaagCTAGT
AAAGAGTGAGCTTGACGCGCAATATTTTTAACAATCTGTGAGACCGGTGA
TTTGAAACCTGACTCGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054247-exon-scaffold_242-1491911889:1099074..1099206 | TCONS_00054247-exon-scaffold_242-1491911889:1099074..1099206 | Clytia hemisphaerica | exon |
| TCONS_00054247-exon-scaffold_242-1510915933:1099074..1099206 | TCONS_00054247-exon-scaffold_242-1510915933:1099074..1099206 | Clytia hemisphaerica | exon |
| TCONS_00054247-exon-scaffold_242-1575043694:1099074..1099206 | TCONS_00054247-exon-scaffold_242-1575043694:1099074..1099206 | Clytia hemisphaerica | exon |
| TCONS_00054247-exon-scaffold_242-1491911889:1101844..1102093 | TCONS_00054247-exon-scaffold_242-1491911889:1101844..1102093 | Clytia hemisphaerica | exon |
| TCONS_00054247-exon-scaffold_242-1510915933:1101844..1102093 | TCONS_00054247-exon-scaffold_242-1510915933:1101844..1102093 | Clytia hemisphaerica | exon |
| TCONS_00054247-exon-scaffold_242-1575043694:1101844..1102093 | TCONS_00054247-exon-scaffold_242-1575043694:1101844..1102093 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1099074..1102093 + |
Blast
The following BLAST results are available for this feature:
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