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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054245 ID=TCONS_00054245|Name=TCONS_00054245|organism=Clytia hemisphaerica|type=transcript|length=1687bp
ttagattttaataaTGATGAAATACGATAAAGAGATGTATATGAGCAAAG
AGTATCAACATTGGCTCAAAAGTAGAACCATTTTTACATGGCTTGCATTC
AGTATGATACTTCTCTACGCAATGGAGCAACAATGTACCAAGTACTTTTT
AATGTACTACATTCAAGATCGATTTGGATTGACTGAACACAATGCTGTCA
TCTTTTACAGTATTTCGGAAGCTATCTATGCTATTGCACAAATCACTGGT
GGTATTGTATTAGGCAGATATTCAGATCGCACTCGTAATATGAAAAAAGT
CGTTCTTATTGCAATGCTTGTTTCCTTTGTTGGTAATACCTTTTACGTGT
GGCATGTTAACCTTTTTCTTGTGGTTATTGGAAGGGCTTTGATGGGATTT
ACTGAATGTGTGAACACAGCTGTCGTAGGTGAGCTAAGACGGGGATACAA
CGATGAACCAGCTAAAGGGAGATCTGTCATCACCTGGTATGAGATAGCTT
TTCAAGTTGGCCAAAACATTGGAGCTGGACTTCCTGTGCTTTTCACAACC
GTGAATCTCAAAATAGGATTCTGGAAACTTGACCAATTAAACATGATGAA
TTTCATTCTTGCAATATTTTGTCTGATCGTTGCTATCATCAGTTTTTTCA
AGGCTATAGATTTATCAAAAGAGCTAGACATTATAAAGAGTAAATATGTG
GTCTCGAAAGACGACAATGAAATGAACGAGAATGGCGTCGAAAAGACgag
caaaaatttaatgaaatggtCAGAGCTCTTTCAAATAGATATCATTTTGC
TCTGTCTTATATATAGTCTTACACGATATGCAGTCGGAACATCAGTTTCT
AGCCTGACGATCTTACTTCCATTAAAGTACCATTGGTCATTGAATGACAT
GTTGGTCTTACTCATGTGTACAAATTGTGCAACGTCATTGACCATTATAG
CTCTGGTAAAAATTGGCCTCCTCAAGAATCAAActcgaagtttttttttg
tacaTCTTATCAATGGTTTTATGCTCGGTAATTGTAACATCGCTGATGCT
TACAGAAATTGGATTGTTAACAAGTTTCGCAAAACAAGCCGTGTTTTTTG
CTTTTATGACTGCTTCAAAGAACTTTTTAGCCAGTCTAACTAAAATAACT
AACACTGTATTGTTGCTTCAATTAGTCAAACCCCAAGATAGTGGTTTTAT
ATTAGGAGTAAGAACAGTTGCTGGTACTTCATTCAAAGGCTTGGCTTTTC
TGTTATCATCAATTTCTTCGAAATATCCCGATTATCACTCACCCGGATTG
GCGCTTGTCATCCTGTTGACTGTTGTCCTCATCCTTTATAGAAGGAACGT
ACATCTTAGAAATTTTANTTTCTGTTATCATCAATTTCTTCTAAATATCC
CGATTATCACTCACCCGGATTGGCGCTTGTCATCCTGTTGACTGTTGTCC
TCATCCTTTATAGAAGGAACGTACatcttaaaaattataaaaatgaataa
tattttctttttgtaaacagGAATATTTTGATAGCTCGTCTACTACAGAA
GTGATTTCATGTAAAGGGTaccttggggggggggggggggcactcgattt
ttaAACGAcagcatgtgccgccaaaaaaatggctttcaaaatttCTCCCT
TTGAAGTAAAATTTCTCTTGATATATTTGTTTTGACG Run BLAST on NCBI protein sequence of TCONS_00054245-protein >TCONS_00054245-protein ID=TCONS_00054245-protein|Name=TCONS_00054245-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp
MMKYDKEMYMSKEYQHWLKSRTIFTWLAFSMILLYAMEQQCTKYFLMYYI
QDRFGLTEHNAVIFYSISEAIYAIAQITGGIVLGRYSDRTRNMKKVVLIA
MLVSFVGNTFYVWHVNLFLVVIGRALMGFTECVNTAVVGELRRGYNDEPA
KGRSVITWYEIAFQVGQNIGAGLPVLFTTVNLKIGFWKLDQLNMMNFILA
IFCLIVAIISFFKAIDLSKELDIIKSKYVVSKDDNEMNENGVEKTSKNLM
KWSELFQIDIILLCLIYSLTRYAVGTSVSSLTILLPLKYHWSLNDMLVLL
MCTNCATSLTIIALVKIGLLKNQTRSFFLYILSMVLCSVIVTSLMLTEIG
LLTSFAKQAVFFAFMTASKNFLASLTKITNTVLLLQLVKPQDSGFILGVR
TVAGTSFKGLAFLLSSISSKYPDYHSPGLALVILLTVVLILYRRNVHLRN
FXFCYHQFLLNIPIITHPDWRLSSC Run BLAST on NCBI transcript from alignment at scaffold_242:1083348..1087071+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054245 ID=TCONS_00054245|Name=TCONS_00054245|organism=Clytia hemisphaerica|type=transcript|length=3724bp|location=Sequence derived from alignment at scaffold_242:1083348..1087071+ (Clytia hemisphaerica)
ttagattttaataaTGATGAAATACGATAAAGAGATGTATATGAGCAAAG
AGTATCAACATTGGCTCAAAAGTAGAACCATTTTTACATGGCTTGCATTC
AGTATGATACTTCTCTACGCAATGGAGCAACAATGTACCAAGTACTTTTT
AATGTACTACATTCAAGATCGATTTGGATTGACTGAACACAATGCTGTCA
TCTTTTACAGTATTTCGGAAGCTATCTATGCTATTGCACAAATCACTGGT
GGTATTGTATTAGGCAGATATTCAGATCGCACTCGTAATATGAAAAAAGT
CGTTCTTATTGCAATGCTTGTTTCCTTTGTTGGTAATACCTTTTACGTGT
GGCATGTTAACCTTTTTCTTGTGGTTATTGGAAGGGCTTTGATGGGATTT
ACTGAATGTGTGAACACAGCTGTCGTAGGtaagtttttttcttatttgct
GGTCTATTCACCCGGGGGAAAgagcactcgatttctaaacgaagACATTT
ATTGTGTGTGCCACCAAAAactggctttcaaaatcggacccttacagtgt
agccTTTGAGCAATAAAAAGGAAAcattacagtgcattttaccgaatGTT
TCTGACctttacagtgtagtttgaattgatatcttattttgctgaaacca
cctgaaaatgagccgCATATGTCGCGACATAATGTGCAAAACAAATTTAA
CAAATGTacatccttacagtgcatttcaagGGTCCCGACAAACCGGCACA
TGCCGTGGGCCAGACCATATAAGTCCCCCCTGGGTCTATTTGTAGGAGGT
CAAACCCCATGATCTTTCACGGTACACGACAACATATGCTTAGTTGGGGA
TAGAGAAAGGATTTTAAAGGGCTCTGCCCATAGTGTTTTTGCTTTCTANC
ACGACAACATATGCTTAGTTGGGGATAGAGAAAGGATTttaaagggctct
gaccatagtgttTTTGCTTTCTATTTTTCACATTTAGAATGTTACACATT
TTCTGTCGGGCACGAGGAGggacaaacaaaataaaaaaatcaaaacgaaa
taaacaaatcaaaaacaaataaaaaaattaaaaaactaaataaaaaaaga
agaataaaataaaaaagaaaaacaaaataaaaaacaaaaataaaaagaaa
aaaagaaaaataaaataataagaaaaaacaaaataaaaaaagaaaaacga
aataaaatataaaaaacaaaatgaaaaatcagcaaataaaaaaacataga
aTAGAGAATCAAAGATGATGAAATGAggattgttgtttttcttgctcATC
TTGTTCATCTAGCATGTTCTGTGAATCTTTTAGGACGCTAAGAAGAAAGG
CAAATCTATTCTGTTATGATTATGGGACTCCTTTTCGCCCAAGGAATAAA
GACGAGGAGGGAGAAAAAGATGAGCAATCTCTCATAACGAGATACGTTAA
CAATGGCCATACACATACGAGGCAATAATTGGGAGGGAATGCAGCTTTGA
AGTTTCTGCATACACGTGCATGAGAAGACGCCATCTTGTTTCTAGAATAA
ACATAAACTCTAGATCACCACTTTCGGTTTCTTCGAGTAACACGCAGGCG
CGCATGcgcaaaataactttttaatttttgctttgtcttttttatttagt
tttttctttttttttcactctgtttttctttttctattttgtttttcttt
tttatttgcttttctttttttattttctttttctttttttatttcgtttt
tctttttttatttagtttttcttttttttattctgtttttcttttgttat
tttgttttctttttttattttgcttttttcctttttttttgtttttcttt
cggCCACCGTAATTTCGTAGACTTTAAAGAGAACGATTTCTGATAGAAAG
AAGTTGTTGCGCGGTAGATTCGCTGGAGATGGATGTTTAAAATGGATATT
CGAAAAGGGCTAATGAAAAGTTATTGACAAGAGATATTGACttcaattca
aataaaaaacggatgacAGATGTCACCATGAGGATAAGATATTCAGAAAA
AGATTCCAAGAAGGGCGTGGTTAACATTTGACAGAGGGAAATTCCCCCAG
ATAGATATTCAACTTACTTATATAAGTGAAATCTAGTCATCTCGTCTGCC
GACTCGGGAAATGACTGAAATGATCCCAAACCAAAAAAACAGATGCAAGA
TGACGTGTGTAAAAACCATGCCTACCAATTaagaaagtccaaaaaagcGT
GGTTTCCCACGTAGTCGAGGGAAATTCCCCAAATGGATATTCAAAATAAC
TCGATCTGGCAAATTTGGAGTGCTCTCAAAACTAGCACAAaaccttttaa
cttttttttttgcacaaccTTAAAAGTCGATCTCTCCTATACTGAAATCA
TGGTGCTATAGCagataaatgaatgaataaataaatgaatgtcaataatt
atttctattttctaGGTGAGCTAAGACGGGGATACAACGATGAACCAGCT
AAAGGGAGATCTGTCATCACCTGGTATGAGATAGCTTTTCAAGTTGGCCA
AAACATTGGAGCTGGACTTCCTGTGCTTTTCACAACCGTGAATCTCAAAA
TAGGATTCTGGAAACTTGACCAATTAAACATGATGAATTTCATTCTTGCA
ATATTTTGTCTGATCGTTGCTATCATCAGTTTTTTCAAGGCTATAGATTT
ATCAAAAGAGCTAGACATTATAAAGAGTAAATATGTGGTCTCGAAAGACG
ACAATGAAATGAACGAGAATGGCGTCGAAAAGACgagcaaaaatttaatg
aaatggtCAGAGCTCTTTCAAATAGATATCATTTTGCTCTGTCTTATATA
TAGTCTTACACGATATGCAGTCGGAACATCAGTTTCTAGCCTGACGATCT
TACTTCCATTAAAGTACCATTGGTCATTGAATGACATGTTGGTCTTACTC
ATGTGTACAAATTGTGCAACGTCATTGACCATTATAGCTCTGGTAAAAAT
TGGCCTCCTCAAGAATCAAActcgaagtttttttttgtacaTCTTATCAA
TGGTTTTATGCTCGGTAATTGTAACATCGCTGATGCTTACAGAAATTGGA
TTGTTAACAAGTTTCGCAAAACAAGCCGTGTTTTTTGCTTTTATGACTGC
TTCAAAGAACTTTTTAGCCAGTCTAACTAAAATAACTAACACTGTATTGT
TGCTTCAATTAGTCAAACCCCAAGATAGTGGTTTTATATTAGGAGTAAGA
ACAGTTGCTGGTACTTCATTCAAAGGCTTGGCTTTTCTGTTATCATCAAT
TTCTTCGAAATATCCCGATTATCACTCACCCGGATTGGCGCTTGTCATCC
TGTTGACTGTTGTCCTCATCCTTTATAGAAGGAACGTACATCTTAGAAAT
TTTANTTTCTGTTATCATCAATTTCTTCTAAATATCCCGATTATCACTCA
CCCGGATTGGCGCTTGTCATCCTGTTGACTGTTGTCCTCATCCTTTATAG
AAGGAACGTACatcttaaaaattataaaaatgaataatattttctttttg
taaacagGAATATTTTGATAGCTCGTCTACTACAGAAGTGATTTCATGTA
AAGGGTaccttggggggggggggggggcactcgatttttaAACGAcagca
tgtgccgccaaaaaaatggctttcaaaatttCTCCCTTTGAAGTAAAATT
TCTCTTGATATATTTGTTTTGACG Coding sequence (CDS) from alignment at scaffold_242:1083348..1087071+ >TCONS_00054245 ID=TCONS_00054245|Name=TCONS_00054245|organism=Clytia hemisphaerica|type=CDS|length=2856bp|location=Sequence derived from alignment at scaffold_242:1083348..1087071+ (Clytia hemisphaerica)
aTGATGAAATACGATAAAGAGATGTATATGAGCAAAGAGTATCAACATTG
GCTCAAAAGTAGAACCATTTTTACATGGCTTGCATTCAGTATGATACTTC
TCTACGCAATGGAGCAACAATGTACCAAGTACTTTTTAATGTACTACATT
CAAGATCGATTTGGATTGACTGAACACAATGCTGTCATCTTTTACAGTAT
TTCGGAAGCTATCTATGCTATTGCACAAATCACTGGTGGTATTGTATTAG
GCAGATATTCAGATCGCACTCGTAATATGAAAAAAGTCGTTCTTATTGCA
ATGCTTGTTTCCTTTGTTGGTAATACCTTTTACGTGTGGCATGTTAACCT
TTTTCTTGTGGTTATTGGAAGGGCTTTGATGGGATTTACTGAATGTGTGA
ACACAGCTGTCGTAGGTGAGCTAAGACGGGGATACAACGATGAACCAGCT
AAAGGGAGATCTGTCATCACCTGGTATGAGATAGCTTTTCAAGTTGGCCA
AAACATTGGAGCTGGACTTCCTGTGCTTTTCACAACCGTGAATCTCAAAA
TAGGATTCTGGAAACTTGACCAATTAAACATGATGAATTTCATTCTTGCA
ATATTTTGTCTGATCGTTGCTATCATCAGTTTTTTCAAGGCTATAGATTT
ATCAAAAGAGCTAGACATTATAAAGAGTAAATATGTGGTCTCGAAAGACG
ACAATGAAATGAACGAGAATGGCGTCGAAAAGACgagcaaaaatttaatg
aaatggtCAGAGCTCTTTCAAATAGATATCATTTTGCTCTGTCTTATATA
TAGTCTTACACGATATGCAGTCGGAACATCAGTTTCTAGCCTGACGATCT
TACTTCCATTAAAGTACCATTGGTCATTGAATGACATGTTGGTCTTACTC
ATGTGTACAAATTGTGCAACGTCATTGACCATTATAGCTCTGGTAAAAAT
TGGCCTCCTCAAGAATCAAActcgaagtttttttttgtacaTCTTATCAA
TGGTTTTATGCTCGGTAATTGTAACATCGCTGATGCTTACAGAAATTGGA
TTGTTAACAAGTTTCGCAAAACAAGCCGTGTTTTTTGCTTTTATGACTGC
TTCAAAGAACTTTTTAGCCAGTCTAACTAAAATAACTAACACTGTATTGT
TGCTTCAATTAGTCAAACCCCAAGATAGTGGTTTTATATTAGGAGTAAGA
ACAGTTGCTGGTACTTCATTCAAAGGCTTGGCTTTTCTGTTATCATCAAT
TTCTTCGAAATATCCCGATTATCACTCACCCGGATTGGCGCTTGTCATCC
TGTTGACTGTTGTCCTCATCCTTTATAGAAGGAACGTACATCTTAGAAAT
TTTANTTTCTGTTATCATCAATTTCTTCTAAATATCCCGATTATCACTCA
CCCGGATTGGCGCTTGTCATCCTGTTGAaTGATGAAATACGATAAAGAGA
TGTATATGAGCAAAGAGTATCAACATTGGCTCAAAAGTAGAACCATTTTT
ACATGGCTTGCATTCAGTATGATACTTCTCTACGCAATGGAGCAACAATG
TACCAAGTACTTTTTAATGTACTACATTCAAGATCGATTTGGATTGACTG
AACACAATGCTGTCATCTTTTACAGTATTTCGGAAGCTATCTATGCTATT
GCACAAATCACTGGTGGTATTGTATTAGGCAGATATTCAGATCGCACTCG
TAATATGAAAAAAGTCGTTCTTATTGCAATGCTTGTTTCCTTTGTTGGTA
ATACCTTTTACGTGTGGCATGTTAACCTTTTTCTTGTGGTTATTGGAAGG
GCTTTGATGGGATTTACTGAATGTGTGAACACAGCTGTCGTAGGTGAGCT
AAGACGGGGATACAACGATGAACCAGCTAAAGGGAGATCTGTCATCACCT
GGTATGAGATAGCTTTTCAAGTTGGCCAAAACATTGGAGCTGGACTTCCT
GTGCTTTTCACAACCGTGAATCTCAAAATAGGATTCTGGAAACTTGACCA
ATTAAACATGATGAATTTCATTCTTGCAATATTTTGTCTGATCGTTGCTA
TCATCAGTTTTTTCAAGGCTATAGATTTATCAAAAGAGCTAGACATTATA
AAGAGTAAATATGTGGTCTCGAAAGACGACAATGAAATGAACGAGAATGG
CGTCGAAAAGACgagcaaaaatttaatgaaatggtCAGAGCTCTTTCAAA
TAGATATCATTTTGCTCTGTCTTATATATAGTCTTACACGATATGCAGTC
GGAACATCAGTTTCTAGCCTGACGATCTTACTTCCATTAAAGTACCATTG
GTCATTGAATGACATGTTGGTCTTACTCATGTGTACAAATTGTGCAACGT
CATTGACCATTATAGCTCTGGTAAAAATTGGCCTCCTCAAGAATCAAAct
cgaagtttttttttgtacaTCTTATCAATGGTTTTATGCTCGGTAATTGT
AACATCGCTGATGCTTACAGAAATTGGATTGTTAACAAGTTTCGCAAAAC
AAGCCGTGTTTTTTGCTTTTATGACTGCTTCAAAGAACTTTTTAGCCAGT
CTAACTAAAATAACTAACACTGTATTGTTGCTTCAATTAGTCAAACCCCA
AGATAGTGGTTTTATATTAGGAGTAAGAACAGTTGCTGGTACTTCATTCA
AAGGCTTGGCTTTTCTGTTATCATCAATTTCTTCGAAATATCCCGATTAT
CACTCACCCGGATTGGCGCTTGTCATCCTGTTGACTGTTGTCCTCATCCT
TTATAGAAGGAACGTACATCTTAGAAATTTTANTTTCTGTTATCATCAAT
TTCTTCTAAATATCCCGATTATCACTCACCCGGATTGGCGCTTGTCATCC
TGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054245-exon-scaffold_242-1491911889:1083348..1083775 | TCONS_00054245-exon-scaffold_242-1491911889:1083348..1083775 | Clytia hemisphaerica | exon |
| TCONS_00054245-exon-scaffold_242-1510915933:1083348..1083775 | TCONS_00054245-exon-scaffold_242-1510915933:1083348..1083775 | Clytia hemisphaerica | exon |
| TCONS_00054245-exon-scaffold_242-1575043694:1083348..1083775 | TCONS_00054245-exon-scaffold_242-1575043694:1083348..1083775 | Clytia hemisphaerica | exon |
| TCONS_00054245-exon-scaffold_242-1491911889:1085813..1087071 | TCONS_00054245-exon-scaffold_242-1491911889:1085813..1087071 | Clytia hemisphaerica | exon |
| TCONS_00054245-exon-scaffold_242-1510915933:1085813..1087071 | TCONS_00054245-exon-scaffold_242-1510915933:1085813..1087071 | Clytia hemisphaerica | exon |
| TCONS_00054245-exon-scaffold_242-1575043694:1085813..1087071 | TCONS_00054245-exon-scaffold_242-1575043694:1085813..1087071 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1083348..1087071 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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