TCONS_00054243 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054243
Unique NameTCONS_00054243
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1842

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054243 ID=TCONS_00054243|Name=TCONS_00054243|organism=Clytia hemisphaerica|type=transcript|length=1842bp
aaccttttttgtaaaattctaaTCCAATTTTGTAGAGATCTGGCAATGTG
AAACCATATTTGAAGTCACCGTCAGTTTTTTCTTCGCTTACTGCTGACGT
ATTGACAATAATTGACATATCGTTCGTTGAATTGGGTGTGTTTTCTGCAT
TTTTATCCtgaatttgatcatttttttctggcaCCACTACTTcctccgcc
atcttgaatcttgCGATTGCACTTTCGTTATTGAGTTTTCAGCAAATCTC
CACCAAAAGTTTAATGTCAGTTTGTTTTATGTNGCGATTGCACTTTCGTT
ATTGAGTTTTCAGCAAATCTCCACCAAAAGTTTAATGTTAGTTTGTTTTA
TGTTTGAATAAATCCAATAATCACGTGACCATAATAATCAAAACATGCAC
CGCTTCAATGAAAACTTTTCTTGTCGCCACTGCCACGTCTGATCACAAGA
GAGGAATTTCACGCATGCGTGGTCGTGggaaaatctaaaaatagatattc
gaaatcaaaacaaaagtgtCTCAAAAAAGTTGCCGCAATACATTCTCTTA
TCGTCGaagaaaaaattcttataaaataaagaaaatttattgGGAATCAA
GGGAAAAAGGTCATTCCTCAATCCGCCATGGATTACAATTTATTTTCGAA
ATGGAGTGCAACACTTTTACTTTGCTCTCTTCTGTCGTCACTGGAGAAAA
CTGAATCACATGGAAGTCATCAGCAAGGACAGCATAATCGCATGGATAGC
AGACACGTTCATGATGTAGAGCACATCAACGAACATTTACGAGATCAAAT
AGACGTCAACCAACAGAAACCGATGAGTAACGAAGATCTAcaatttcatt
atttcaaaGTTCACGATAGTGATAATGACGATAAGCTTGATGGTATTGAA
TTAGCGACAGCAATGGCGCATTACCACGATGAAGAACATGCAGAAAAACC
TGAAGACTATACTGAAGAAGAATTAGCGAGTATGGTTGATCAAATTTTAG
ACGAAGATGATTTAAATAAAGACGGATACATTGACTACCCAGAATTCATT
GCTTCGCAACAACGTGAAGAAGCTGTGGCTAAATAGAATCATGTTTTTGG
CTGTCACTAAGCGTCTAAATAACGTCCGCCTAACATCCATTATATCTATA
CAGTCCGAGAAGAACTTAAAAAAGTTGTACAGCGTTGTATGttattcaat
aattttcttcaaattatatGACGGGACATTCAATAAGTTCGATGTTAGGG
AGGGGCAAAAAGCGAATAGGTCCACTATGAAAGCATATGAATGTCCTTAT
TTCCAAAATCTTATTTTGCCAAAAACGAATGAATTTTTCCAGTCTGATGG
TATAATGTGGTTTGATATTTACGCCCCCTTCTCACATACCCACTGGGATC
CCttctcactggaaaatttggccaaaatacgtccccagtggaaagttATA
CTCTtaattttgtccccactgaaaactgctaaaaatagtaaaaaacaata
ctcgctgcaaaatattatgcttttCCCATTCCCAAATAATTTTCTGACTT
CATAgagaatatgggaatatcaatttcATCAAGTTTCGAGGGTCTGTTTG
AAGGGGGTatatattttcagctttataaaaaaggtttaaaaagaaAGTTG
GATCTTTTTGCATCTCCTTCTTTACTAAAGGACTGTTTTATAGGAGATTC
TAATTTATAatgtattttgtaaatattaaattttagctcaaataattaat
tcaaaatattagatgatatttttaaagacagagTTTGCCtattgtatttt
tctttttaacattAACTTGTTGATATAGACTACTGTAAACAC
Run BLAST on NCBI

protein sequence of TCONS_00054243-protein

>TCONS_00054243-protein ID=TCONS_00054243-protein|Name=TCONS_00054243-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
MDYNLFSKWSATLLLCSLLSSLEKTESHGSHQQGQHNRMDSRHVHDVEHI
NEHLRDQIDVNQQKPMSNEDLQFHYFKVHDSDNDDKLDGIELATAMAHYH
DEEHAEKPEDYTEEELASMVDQILDEDDLNKDGYIDYPEFIASQQREEAV
AK
Run BLAST on NCBI

transcript from alignment at scaffold_242:1035782..1040075+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054243 ID=TCONS_00054243|Name=TCONS_00054243|organism=Clytia hemisphaerica|type=transcript|length=4294bp|location=Sequence derived from alignment at scaffold_242:1035782..1040075+ (Clytia hemisphaerica)
aaccttttttgtaaaattctaaTCCAATTTTGTAGAGATCTGGCAATGTG
AAACCATATTTGAAGTCACCGTCAGTTTTTTCTTCGCTTACTGCTGACGT
ATTGACAATAATTGACATATCGTTCGTTGAATTGGGTGTGTTTTCTGCAT
TTTTATCCtgaatttgatcatttttttctggcaCCACTACTTcctccgcc
atcttgaatcttgCGATTGCACTTTCGTTATTGAGTTTTCAGCAAATCTC
CACCAAAAGTTTAATGTCAGTTTGTTTTATGTNGCGATTGCACTTTCGTT
ATTGAGTTTTCAGCAAATCTCCACCAAAAGTTTAATGTTAGTTTGTTTTA
TGTTTGAATAAATCCAATAATCACGTGACCATAATAATCAAAACATGCAC
CGCTTCAATGAAAACTTTTCTTGTCGCCACTGCCACGTCTGATCACAAGA
GAGGAATTTCACGCATGCGTGGTCGTGggaaaatctaaaaatagatattc
gaaatcaaaacaaaagtgtCTCAAAAAAGTTGCCGCAATACATTCTCTTA
TCGTCGaagaaaaaattcttataaaataaagaaaatttattgGGAATCAA
GGGAAAAAGGTAAGAGAAGAAACATCTGCTTTTTATCGTGATGATTTTCA
GATATCTATTAGCGATTTCTCTTACTCTACTTTTAGAGAGTGTGCTTTGT
GTATTCAGCGAATTATTTTGTGagtgtaaaaaatataaaatggaTAACTC
ATTTTTATTCTTCGCTTTATAGGTCATTCCTCAATCCGCCATGGATTACA
ATTTATTTTCGAAATGGAGTGCAACACTTTTACTTTGCTCTCTTCTGTCG
TCACTGGAGAAAACTGAATCACATGGAAGTCATCAGCAAGGACAGCATAA
TCGCATGGATAGCAGACACGTTCATGATGTAGAGTAAGTGTTTCTATTGT
AATTTTATTTCCTGTATCAAACCAATGATAAAACCAACTTGGTCAAATTT
CAATACGGAGCTTAGTACGAGTCTTCAAACCGCGCTTCAAACGACGTTAT
GATAACTTTCCTTATTGATATTTAGGTCCTTGGTAATTATTTAATGACTA
GGTATAaacatcttttcttttttattttgttggaaAAAACAACTATTCTA
ACCTTTGCAAATCAAAAAACCTTCTGATTTCAGATAGGGAGGATATAAAC
CAGAGAGTAGGGGAATAGGGGCATTCAAATATGAATTATAAAATCAGAAG
Cacccaccgacctaaaatttgcaaatatctgttctgatttgccagctgga
aggatttccacaaaattaagaacagttcctcgttttccaggggagaaatt
tttacttcataacagttatatttttccagctaggaggtaaaaaaactttc
agaacagatacgaaattaccaggcgatcgattttacgcgagttaactgtt
cttatctaccagaGCTGACataatcttataagaacagatcgctaaattcc
agctcgacATTGAAcgcttttaagaacagaaacttaatttccagctaaca
gttcgaacagatccacaatttccagatgttttgtagaacagatggagaat
ttccagctgccactccaggcaaccacattcaggacTTCTTTGAAATTCCC
TCACAGAACAGATAGGGAATTCTTAGACAccttatttataaatataagat
atcaaactattttttcataagaacagatcatattcttccagctggtccca
attttcagtagaacagatcatattttccagctggtcccaatcttcagtag
aacagaccatatttttccagctggtcccaatcttcagtagaacagaccat
atttttccagctgggcccaatcttcagtagaacagaccacttttttccag
cagacttttctctttagttcgctaagaacagaccgccatatccagctgga
acgtgccttcagaacagatattttgaagtccccctTCGGTGGATGATGCT
TTCGTAAAATGCTGTTTTCAACTATCGTAATGAATTAATCATTATTCAAC
TATTCAACAAAACAACAAgaggtttttgaaatatttattgtatTGGTGAA
GATTTTTAATTCGTTACAGTAATTATGCGCAAGCTTTAGTGAGAGCAAGA
AGCTAATTGAGGGAAACacgattttaaacatttttaaacaatGAGCATGA
TAATTTAATAGCCGCAGTTATTAGCTTTGCCGCAATTCGGTTGCTACACA
AAAGAAGCTTCCCAGCGAAGACGGTTAGGATGGTAGAGAAGGCGATCCAT
TCGAGTTGATTCAATACCTACTGatactttcattttttataagaaaaatt
tatatAAGAACGCAACTCTTTAATagcaaaatattaaaaagaaatttgcc
gACTCTTTCATCTGGTTTGTCCCtaataattattattatataaTTTCAAT
AGTTATTTCGGATAAATAAGCTAAGGTAATACTTAAGTTTTACCAACTTT
CAAGCCTGATCATGCTAGTAACCCTTTATAATTAAGATATAAAATATGGT
TGGTATTTTGCTATGATAAAAACACTTCCTCGCTAGATATGCTGTCGCGC
CTATAAGTGTACtctgtatctcacgtttatcacttcgtagtacactctgt
gcgcattgtttGTTTGATAAAACAAATCCCGTACGGAGaactctgcgatg
aagtatgatttataaaataGCTCTCTTATCGCCTCCTCTCTCTCACCAAC
ACatcggtcggtttgaaaaatctcaaatgagaaaagacaacaCAGACCCT
Ctacagcaatgaattttgaaattagctgtagatactgggtctgtgtacag
acaactaGTGTGGCTTAAAGTTGTACTCTCCTTCTCCTTCACGTCAACTT
TTTCTCCACCAATTTCCAGGCACATCAACGAACATTTACGAGATCAAATA
GACGTCAACCAACAGAAACCGATGAGTAACGAAGATCTAcaatttcatta
tttcaaaGTTCACGATAGTGATAATGACGATAAGCTTGATGGTATTGAAT
TAGCGACAGCAATGGCGCATTACCACGATGAAGAACATGCAGAAAAACCT
GAAGACTATACTGAAGAAGTAACTTTCGATTCATCCTTTTAGtgatttta
aaattcaacaGATACCGCATCTTCTTTCTCGAAGTTCCTTTCCTTGATGC
TTGCAGCTCTGACTTAGAATATCAATTGCGAAGACTTCAAATATGTAGAG
ATATATAACTTTAGAATGATATCGACAGTATCGAAAGCGATTATTCCTGC
AATCTTTTTTAAACTTCCATTTGATTCCTAGACATCTCTATTTATCAATT
CAGTTCATTTATAGAATTGATGGCTGACatgctgaaaaaaaaagatttta
aacaaCTTCTTTTATTTCCAGGAATTAGCGAGTATGGTTGATCAAATTTT
AGACGAAGATGATTTAAATAAAGACGGATACATTGACTACCCAGAATTCA
TTGCTTCGCAACAACGTGAAGAAGCTGTGGCTAAATAGAATCATGTTTTT
GGCTGTCACTAAGCGTCTAAATAACGTCCGCCTAACATCCATTATATCTA
TACAGTCCGAGAAGAACTTAAAAAAGTTGTACAGCGTTGTATGttattca
ataattttcttcaaattatatGACGGGACATTCAATAAGTTCGATGTTAG
GGAGGGGCAAAAAGCGAATAGGTCCACTATGAAAGCATATGAATGTCCTT
ATTTCCAAAATCTTATTTTGCCAAAAACGAATGAATTTTTCCAGTCTGAT
GGTATAATGTGGTTTGATATTTACGCCCCCTTCTCACATACCCACTGGGA
TCCCttctcactggaaaatttggccaaaatacgtccccagtggaaagttA
TACTCTtaattttgtccccactgaaaactgctaaaaatagtaaaaaacaa
tactcgctgcaaaatattatgcttttCCCATTCCCAAATAATTTTCTGAC
TTCATAgagaatatgggaatatcaatttcATCAAGTTTCGAGGGTCTGTT
TGAAGGGGGTatatattttcagctttataaaaaaggtttaaaaagaaAGT
TGGATCTTTTTGCATCTCCTTCTTTACTAAAGGACTGTTTTATAGGAGAT
TCTAATTTATAatgtattttgtaaatattaaattttagctcaaataatta
attcaaaatattagatgatatttttaaagacagagTTTGCCtattgtatt
tttctttttaacattAACTTGTTGATATAGACTACTGTAAACAC

Coding sequence (CDS) from alignment at scaffold_242:1035782..1040075+

>TCONS_00054243 ID=TCONS_00054243|Name=TCONS_00054243|organism=Clytia hemisphaerica|type=CDS|length=1377bp|location=Sequence derived from alignment at scaffold_242:1035782..1040075+ (Clytia hemisphaerica)
ATGGATTACAATTTATTTTCGAAATGGAGTGCAACACTTTTACTTTGCTC
TCTTCTGTCGTCACTGGAGAAAACTGAATCACATGGAAGTCATCAGCAAG
GACAGCATAATCGCATGGATAGCAGACACGTTCATGATGTAGAGCACATC
AACGAACATTTACGAGATCAAATAGACGTCAACCAACAGAAACCGATGAG
TAACGAAGATCTAcaatttcattatttcaaaGTTCACGATAGTGATAATG
ACGATAAGCTTGATGGTATTGAATTAGCGACAGCAATGGCGCATTACCAC
GATGAAGAACATGCAGAAAAACCTGAAGACTATACTGAAGAAGAATTAGC
GAGTATGGTTGATCAAATTTTAGACGAAGATGATTTAAATAAAGACGGAT
ACATTGACTACCCAGAATTCATTGCTTCGCAACAACGTGAAGAAGCTGTG
GCTAAATAGATGGATTACAATTTATTTTCGAAATGGAGTGCAACACTTTT
ACTTTGCTCTCTTCTGTCGTCACTGGAGAAAACTGAATCACATGGAAGTC
ATCAGCAAGGACAGCATAATCGCATGGATAGCAGACACGTTCATGATGTA
GAGCACATCAACGAACATTTACGAGATCAAATAGACGTCAACCAACAGAA
ACCGATGAGTAACGAAGATCTAcaatttcattatttcaaaGTTCACGATA
GTGATAATGACGATAAGCTTGATGGTATTGAATTAGCGACAGCAATGGCG
CATTACCACGATGAAGAACATGCAGAAAAACCTGAAGACTATACTGAAGA
AGAATTAGCGAGTATGGTTGATCAAATTTTAGACGAAGATGATTTAAATA
AAGACGGATACATTGACTACCCAGAATTCATTGCTTCGCAACAACGTGAA
GAAGCTGTGGCTAAATAGATGGATTACAATTTATTTTCGAAATGGAGTGC
AACACTTTTACTTTGCTCTCTTCTGTCGTCACTGGAGAAAACTGAATCAC
ATGGAAGTCATCAGCAAGGACAGCATAATCGCATGGATAGCAGACACGTT
CATGATGTAGAGCACATCAACGAACATTTACGAGATCAAATAGACGTCAA
CCAACAGAAACCGATGAGTAACGAAGATCTAcaatttcattatttcaaaG
TTCACGATAGTGATAATGACGATAAGCTTGATGGTATTGAATTAGCGACA
GCAATGGCGCATTACCACGATGAAGAACATGCAGAAAAACCTGAAGACTA
TACTGAAGAAGAATTAGCGAGTATGGTTGATCAAATTTTAGACGAAGATG
ATTTAAATAAAGACGGATACATTGACTACCCAGAATTCATTGCTTCGCAA
CAACGTGAAGAAGCTGTGGCTAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034216XLOC_034216Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054243-proteinTCONS_00054243-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054243-exon-scaffold_242-1491911889:1035782..1036390TCONS_00054243-exon-scaffold_242-1491911889:1035782..1036390Clytia hemisphaericaexon
TCONS_00054243-exon-scaffold_242-1510915933:1035782..1036390TCONS_00054243-exon-scaffold_242-1510915933:1035782..1036390Clytia hemisphaericaexon
TCONS_00054243-exon-scaffold_242-1575043694:1035782..1036390TCONS_00054243-exon-scaffold_242-1575043694:1035782..1036390Clytia hemisphaericaexon
TCONS_00054243-exon-scaffold_242-1491911889:1036554..1036714TCONS_00054243-exon-scaffold_242-1491911889:1036554..1036714Clytia hemisphaericaexon
TCONS_00054243-exon-scaffold_242-1510915933:1036554..1036714TCONS_00054243-exon-scaffold_242-1510915933:1036554..1036714Clytia hemisphaericaexon
TCONS_00054243-exon-scaffold_242-1575043694:1036554..1036714TCONS_00054243-exon-scaffold_242-1575043694:1036554..1036714Clytia hemisphaericaexon
TCONS_00054243-exon-scaffold_242-1491911889:1038701..1038899TCONS_00054243-exon-scaffold_242-1491911889:1038701..1038899Clytia hemisphaericaexon
TCONS_00054243-exon-scaffold_242-1510915933:1038701..1038899TCONS_00054243-exon-scaffold_242-1510915933:1038701..1038899Clytia hemisphaericaexon
TCONS_00054243-exon-scaffold_242-1575043694:1038701..1038899TCONS_00054243-exon-scaffold_242-1575043694:1038701..1038899Clytia hemisphaericaexon
TCONS_00054243-exon-scaffold_242-1491911889:1039203..1040075TCONS_00054243-exon-scaffold_242-1491911889:1039203..1040075Clytia hemisphaericaexon
TCONS_00054243-exon-scaffold_242-1510915933:1039203..1040075TCONS_00054243-exon-scaffold_242-1510915933:1039203..1040075Clytia hemisphaericaexon
TCONS_00054243-exon-scaffold_242-1575043694:1039203..1040075TCONS_00054243-exon-scaffold_242-1575043694:1039203..1040075Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1035782..1040075 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.115646	0.0900884	0.0515591	0	8.97745	7.78483	23.378	24.2624	4.87622	2.2833	15.4989	19.1397	13.8753	9.31187	9.11237	21.9173	18.3725	17.4951	1.25189	2.08485	13.2855	11.7063	7.21836	6.81594	5.31651	5.56553	2.41422	0.968278	0.02519	0.179526
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00054243 vs. Swiss-Prot (Human)
Match: MCFD2 (Multiple coagulation factor deficiency protein 2 OS=Homo sapiens GN=MCFD2 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.811e-24
Identity = 55/120 (45.83%), Postives = 75/120 (62.50%), Query Frame = 1 
Query:  703 ESHGSHQQGQHNRMDSRHVHDVEHINEHLRDQIDVNQQKPMSNEDLQFHYFKVHDSDNDDKLDGIELATAMAHYHDEEHAEKPEDYTEEELASMVDQILDEDDLNKDGYIDYPEFIASQQ 1062
            E   S  Q     +D   VHD EHI EHL   I+   +  MS ++LQ HYFK+HD D ++ LDG+EL+TA+ H H EE +E+    +E+EL +++D +L +DD N DGYIDY EF  S Q
Sbjct:   28 EPAASFSQPGSMGLDKNTVHDQEHIMEHLEGVIN-KPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDYAEFAKSLQ 146
The following BLAST results are available for this feature:
BLAST of TCONS_00054243 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCFD21.811e-2445.83Multiple coagulation factor deficiency protein 2 O... [more]
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