TCONS_00054239 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00054239
Unique Name	TCONS_00054239
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2927

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_242:954262..969333+

transcript sequence

>TCONS_00054239 ID=TCONS_00054239|Name=TCONS_00054239|organism=Clytia hemisphaerica|type=transcript|length=2927bp
GTATAATCGATTGCGCTATATCAATTTCAAAATGTGTATCTTTCAAActa
ttaaaaatctttttcacctAACTAACATTGTTTTGCTACTTAAAGAACCA
AGGTCATACGCGACGACTAATTCTGTTCTGAACGTCGCGATGAGGCTATC
GACCATTCTTTTGCTCACATTAATCCTAGTAGTTGTACTACTTATTTCAT
CAACCGAAGCAAAGAAAAGAAAGCGTAAAAGTTATCACCCAACGACTAAA
AGAAAAAGCCACCGCCATCCCACTACTAAGCGAAATCACCACAGCCATCG
GCACACCCATCCCACAACAAAACGCCACAGCCATCGGCACACCCACCCCA
CAACAAAACACCACAGCCATCGGCACACCCATCCGACTACAAAACGCCAC
AGCCATCGGCACACACATCCGACTACAAAACGTAAGAGTCACAGGAGTCG
TAGAAGTCATCGTGGCAGTACTcgcagaaagaaaaataattgcaTCGTCT
CAGGTTGGAGTCAATGGTCATCCTGTTCATGTTTAACTTACATTGAACAA
AGCAGATCAAGAATTATAACAGACCCTGGAAAATACTGTCATGTTTCTCT
GAAAGAGACAAGAAAGTGCTCTCAAAAAATTCAATGCCGTTGGAATGAAG
GCGTTTATTGTTATCCAAAGACTGGGAAATGCAAATGCAGGAAAGGACAT
GACCGAACAACAGCAACAACCTGTGTGGATATTAATGAATGCTTGAGATC
ACCTTGTCGAAATGGGGGTGCTTGTATGAACAGAGTTAGCTCATATTATT
GCCAATGCCCTAAGGGTTGGACTGGAAGGAATTGTGAAACCAATGTCAAC
GAATGTCAATCATCTCCTTGCCAAAATAACAGAGTTTGTGTTGATGGTAT
CAATGATTATACTTGCAAATGTCAACCTGGATTCACAGGAAAGAATTGTG
AAACCAATGTCAATGAATGTCAATCAACTACTTGCCAAAACAACGGAGTT
TGTGTTGATGGTATCAATGATTATATATGCAAATGTCAACCTGGATTCAA
AGGAAAGAATTGTGAAACCAATGTCAATGAATGTCAATCATCTCCTTGTC
AAAACAATGGAGTTTGTGTTGATGGTATCAATGATTACACATGCAAATGT
CGACCTGGATTCAAAGGAAATAATTGTGAGACTAATTTCAACGAATGTCA
ATCATCTCCATGCCAAAACAACGGAGCTTGCGTTGATGGTATCAATGATT
ATACTTGCAAATGTCAACCAGGATTCACTGGAAAGAATTGTGAAACCAAT
GTCAACGAATGTCAATCATCTCCTTGCAAAAACAACGGAGTTTGTGTTGA
TGGTATCAATGATTATACATGCAAATGTCAACCTGGATTCAAAGGAAAGA
GATGTGAAACCAATGTCAACGAATGTCAATCATCTCCTTGCCAAAACAAC
GGAGTTTGTGTTGATGGTATCAATGATTATACATGCAAATGTCAACCTGG
ATTCAAAGGAAAGAATTGTGAAACTGATGTCAACGAATGTCAATCATCTC
CTTGCAAAAACAAAGGAGTTTGTGTTGATGGTATCAATGATTATACATGC
AAATGTCAACCTGGATTCAAAGGAAAGAATTGTGAAACCGATGTCAACGA
ATGTCAATCATCTCCTTGCCAAAACAAAGGAGTTTGTGTTGATGGTATCA
ATGATTATACATGCAAATGTCAACCTGGATTCAAAGGAAAGAATTGTGAA
ACCGATGTCAACGAATGTCAATCATCTCCTTGCCAAAACAAAGGAGTTTG
TGTTGATGGCATCAATGATTATACTTGCCAATGTCCAGCTGGATTTAAAG
GAAAGAATTGTGAAACCGATGTCAACGAATGTCAATCATCTCCTTGCCAA
AACAAAGGAGTTTGTGTTGATGGCATCAATGATTATACTTGCTAATGTCC
AGCTGGATTTAAAGGAAAGAATTGTGAGGTGAACGTCAATAGTTGTAAAC
CAAGCCCTTGTAAAAACCAAGGAATATGTCAAGAAACAAGTCAAGGATAT
AGCTGCACCTGCTTAGTCGGATGGCAAGGGAAGAATTGTGAAACGAAGAT
TAACCCTTGCACTTCGAAACCATGTGAAAATGATGGGATCTGTTCGGTCA
AAGAGAACAATATTTATTTCTGTCAATGCAAAGATGGTTGGTCTGGTCAA
AATTGTAAAGTTGAGAGAAACGAGTGCGATTCGTCACCTTGCGTGAATGC
GTTTCAATGTATCGATGGTAAAAATGATTACACTTGTGTTTGCAAACCAG
GATGGGAAGGCAAAAGGTGTCAATACAACAAAAACGAATGTGCTTCATCA
CCGTGTGTCAATGCATTTACTTGTCAAGATTTGTTGAATGATCATCGATG
TTTCTGTCGACCTGGATGGAAGGGAAAGAACTGCGACGTTAATATCGATC
CATGCTTTAAAAATCAATGTCAAAATAATGGTTCTTGTCATGCTATTGGC
TCTGGCTATCGTTGTATGTGTCCTAATAGCTGGATTGGTCGACATTGTGA
GAAAAAAGCTTCTTGTACGCCAAATACTTGTTCTGGTAATGGCAGATGCC
TAACCAAAGCCGGTGGATATGTTGAATGTTTTTGTGATAAAGGCTATCGA
GGGAGATATTGCGAATTCGAAAAAGATCCATGCAAATCATCACCGTGTGT
TCGAGGAGTTTGTCACAAAAGTGGTCCATTGGATTACGTATGTGTTTGTC
CAAAAGGTTTCACTGGATTGAACTGTGGAAAAAAAACACTCAATCTCTGA
TGAATGCTGGAATGCACAATACAGATCAACCATGATAATGATATAAgaaa
tattgttaaaaaaatattttaacagtTTTGGAAATTCAgaatacataaag
atatccttagaaaaaaataaatgctTT

Run BLAST on NCBI

transcript from alignment at scaffold_242:954262..969333+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00054239 ID=TCONS_00054239|Name=TCONS_00054239|organism=Clytia hemisphaerica|type=transcript|length=15072bp|location=Sequence derived from alignment at scaffold_242:954262..969333+ (Clytia hemisphaerica)
GTATAATCGATTGCGCTATATCAATTTCAAAATGTGTATCTTTCAAActa
ttaaaaatctttttcacctAACTAACATTGTTTTGCTACTTAAAGAACCA
AGGTCATACGCGACGACTAATTCTGTTCTGAACGTCGCGATGAGGCTATC
GACCATTCTTTTGCTCACATTAATCCTAGTAGTTGTACTACTTATTTCAT
CAACCGAAGCAAAGAAAAGAAAGCGTAAAAGTTATCACCCAACGACTAAA
AGAAAAAGCCACCGCCATCCCACTACTAAGCGAAATCACCACAGCCATCG
GCACACCCATCCCACAACAAAACGCCACAGCCATCGGCACACCCACCCCA
CAACAAAACACCACAGCCATCGGCACACCCATCCGACTACAAAACGCCAC
AGCCATCGGCACACACATCCGACTACAAAACGTAAGAGTCACAGGAGTCG
TAGAAGTCATCGTGGCAGTACTcgcagaaagaaaaataattgcaTCGTCT
CAGGTACTTAGGGCCACAACTTTTTCTTAACTTGAATGCAATTTTCCTAT
TTCTACAAATCCGAGAGGGCTCATAATATTAAGGAGCAAGTGCGCTAACG
TTTTTGTCCTCAAATCTAGAGAAATTCTAAGTGATTTTTAGCctgtttga
aagatttttaggTGTACTTTGTTGATACTGAAATTCCGGTGTGACACTCA
AGCAAAATGGGTACAGGGGCGTGACGCAGATCAGAGTCCACCCCTCTCCT
TTTATACgcccctcgaataaacacccTTCCTAAAACGCGAAAAATTCTAG
GGACGTTTATTCAAGGTaatataaaaaactttaaatgtAAAGCAGTAGAT
ATATAGAACAGAAAAATGAAGTGATTGCTTGTGTAGAAATGTTGGTCATC
TTTACGTGACATCAGCATACACAACATTAACTAAAATTTTTATCTcgata
ctttttctaaaaagattcgATGAATCCCCTTTGACGAGTCAGTCTTTAGA
AATTACAATCTTTAGGTTTCTTGGAGCGAGTTTAGACCTCACTAGGTGTA
GAGAGCAAAAcataatacacccccttctcacagactcacttggacccttc
ccactggaaaaaattcGCCAAAAATTCGCCCCCAGTGGAAAAATCATCTA
CGTATTTTTggcccactgaaaataatcaaataaactaatcctcactgcca
aatattatgctattttatTTGTCCCATCCTCactaaattttctgacttga
aaacaaaagaattgaaatccccagccatggaaatatcaattcccatcgag
tttcagcccgttatttttatccccgatGGTTGAAAAAATTCTCCCGGGTC
TGTGCGAGACGGGGGTGACATAATAAgacctctctctctctctctttatT
TCTCAAATCTAGGTTGGAGTCAATGGTCATCCTGTTCATGTTTAACTTAC
ATTGAACAAAGCAGATCAAGAATTATAACAGACCCTGGAAAATACTGTCA
TGTTTCTCTGAAAGAGACAAGAAAGTGCTCTCAAAAAATTCAATGCCGTT
GGAATGAAGGCGTTTATTGTTATCCAAAGACTGGGAAATGCAAATGCAGG
AAAGGACATGACCGAACAACAGGTGAGGTTTTATACACTCGTGTGTCACA
GACCCTTGGGTCCCAGCACAACTGGAACATTTGGCAAGAATCTCGTCTTc
gttgggaaaaatacccttgaaAATCAGCCCCAccgggaaattgactttga
ttttatccccattcgaaattaaatgtttaaaaattgcaatccaaaacttt
taaccttggaatttttaaccttggaacaatagaatttttatccccaagcG
GATTTCAATTAGAAATGTTATCCCCATTGTGGGAAAGATTTTCACTGGGC
TGTGAAACCGGGGTGTTATTATCAATCAAATATCTCAGGAATAACCGAGA
AAATTCATGCGTCCGAACAAAGTTAAGTAGTAAAGTTATGATAGGCTCGG
GAAAATCTATGCAGGGTACAGCATCTTTGTATCAAAACGCATAGATTTGC
AGATTTTTGGAACAAGCTTTAGCTAGATACTCTAAGACACATATAGCATC
AACTTAATACATGAATGAGGATGCATTCTCCTTTTAAATTTCATTCAGTA
TTGTATTCCATTCATTTCAGCAACAACCTGTGTGGATATTAATGAATGCT
TGAGATCACCTTGTCGAAATGGGGGTGCTTGTATGAACAGAGTTAGCTCA
TATTATTGCCAATGCCCTAAGGGTTGGACTGGAAGGAATTGTGAAACCAA
TGTCAACGAATGTCAATCATCTCCTTGCCAAAATAACAGAGTTTGTGTTG
ATGGTATCAATGATTATACTTGCAAATGTCAACCTGGATTCACAGGAAAG
AATTGTGAAACCAATGTCAATGAATGTCAATCAACTACTTGCCAAAACAA
CGGAGTTTGTGTTGATGGTATCAATGATTATATATGCAAATGTCAACCTG
GATTCAAAGGAAAGAATTGTGAAACCAATGTCAATGAATGTCAATCATCT
CCTTGTCAAAACAATGGAGTTTGTGTTGATGGTATCAATGATTACACATG
CAAATGTCGACCTGGATTCAAAGGAAATAATTGTGAGACTAATTTCAACG
AATGTCAATCATCTCCATGCCAAAACAACGGAGCTTGCGTTGATGGTATC
AATGATTATACTTGCAAATGTCAACCAGGATTCACTGGAAAGAATTGTGA
AACCAATGTCAACGAATGTCAATCATCTCCTTGCAAAAACAACGGAGTTT
GTGTTGATGGTATCAATGATTATACATGCAAATGTCAACCTGGATTCAAA
GGAAAGAGATGTGAAACCAATGTCAACGAATGTCAATCATCTCCTTGCCA
AAACAACGGAGTTTGTGTTGATGGTATCAATGATTATACATGCAAATGTC
AACCTGGATTCAAAGGAAAGAATTGTGAAACTGATGTCAACGAATGTCAA
TCATCTCCTTGCAAAAACAAAGGAGTTTGTGTTGATGGTATCAATGATTA
TACATGCAAATGTCAACCTGGATTCAAAGGAAAGAATTGTGAAACCGATG
TCAACGAATGTCAATCATCTCCTTGCCAAAACAAAGGAGTTTGTGTTGAT
GGTATCAATGATTATACATGCAAATGTCAACCTGGATTCAAAGGAAAGAA
TTGTGAAACCGATGTCAACGAATGTCAATCATCTCCTTGCCAAAACAAAG
GAGTTTGTGTTGATGGCATCAATGATTATACTTGCCAATGTCCAGCTGGA
TTTAAAGGAAAGAATTGTGAAACCGATGTCAACGAATGTCAATCATCTCC
TTGCCAAAACAAAGGAGTTTGTGTTGATGGCATCAATGATTATACTTGCT
AATGTCCAGCTGGATTTAAAGGAAAGAATTGTGAGGTGAACGTCAATAGT
TGTAAACCAAGCCCTTGTAAAAACCAAGGAATATGTCAAGAAACAAGTCA
AGGATATAGCTGCACCTGCTTAGTCGGATGGCAAGGGAAGAATTGTGAAA
CGAAGATTAACCCTTGCACTTCGAAACCATGTGAAAATGATGGGATCTGT
TCGGTCAAAGAGAACAATATTTATTTCTGTCAATGCAAAGATGGTTGGTC
TGGTCAAAATTGTAAAGTTGAGAGAAACGAGTGCGATTCGTCACCTTGCG
TGAATGCGTTTCAATGTATCGATGGTAAAAATGATTACACTTGTGTTTGC
AAACCAGGATGGGAAGGCAAAAGGTGTCAATACAACAAAAACGAATGTGC
TTCATCACCGTGTGTCAATGCATTTACTTGTCAAGATTTGTTGAATGATC
ATCGATGTTTCTGTCGACCTGGATGGAAGGGAAAGAACTGCGACGTTAAT
ATCGATCCATGCTTTAAAAATCAATGTCAAAATAATGGTTCTTGTCATGC
TATTGGCTCTGGCTATCGTTGTATGTGTCCTAATAGCTGGATTGGTCGAC
ATTGTGAGAAAAAAGCTTCTTGTACGCCAAATACTTGTTCTGGTAATGGC
AGATGCCTAACCAAAGCCGGTGGATATGTTGAATGTTTTTGTGATAAAGG
CTATCGAGGGAGATATTGCGAATTCGAAAAAGGCGAGGAATGCTCAAAAT
CTAAGTAATCTCCCAAATGCTGCGTTAAATAGTGAAATGttctttttgta
actttttgatCTTCACACCTTCATCATTAATAGAAGCTGAGCTAAACATT
Tcggttaatgttaatgttaatgtatatattctttaaagtcgaaaaatgtg
tacaaatctgtactagctttaaagctaatagagtttgactgcctatttta
caaaatgaatcattcatcatcatctgttaatgcccaatcgctgacgattt
cttccgtagagcattttggtttataatttgaagatttttgttcggttttt
taatttcttaacgatgcgtagttttgttcttgggcttcctcttaTGCGCC
AGTTGAATCCTTTATTGTTATTTATCTCCTtgatctttttccgttcgttg
attgtgaaatcttccgttatacttacctgaaaaaacaagtttcttttagc
atGTGTAAAGTCTTCATGATAATATCTTTTTCATGTTGACTCTGCAGGGT
GACTTTCAGAGGACGGCccattctttgtttttctgtctcctaatctgtgg
tgagtaaGCTTGATTTCAggaacattgatgtcatctaggagttctcggaa
ccgaaatatgttatattttttcccattttcttcttcttccttatctgggc
ctgaatgttcgagaaacccgtgaacgatcatattcagttttctagattct
atgtctcttttttcactttcttccttccgtttttgttctTCGGCAGATTC
AAGTCTTTTTTTTGCTTCTTGGTAATCTCCGCGTaagttttctttgatgt
ttccgtCATTATTTCTGCTGTGTGCTTTATTTCCTCCTTTATCATGCTTC
TTGTCTTTTCCTCCATTTCTTGTAGTTTCCTGCCAGAAAGGTTCTgaggt
catttttgatggaatcacgggtttttgtgttggtgttgacctcgtTGTTC
GTCGTtcgtcgtctttctttttaagttcattttgtaTCATATGTTGAATG
TTTTTtcccactttatttcttaggtttttcgttattcgtacgcagtttga
acataagtaatgatcgtTGTAAGATGTCACGAATATTTGTAGCTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTTGTAGTTGATACAGGGGTAActgtgtgcactcataatgaactgatctt
ttacattttttgcatgttaagcGATCCAGGTCTTCGTCTTCAGTACATCT
TGACGGCTTGCAAGCTTGAGGGGGTAaggctgcttcgaaaggctgatctt
tatccattttgatgttattttcatgaatttgatgtttttatttgttttca
gccattttttcgaagagcgTTGAGTCGAGTGAGAATGTCTCAAGAATAGA
AAACTTaatatcaaaaaacctttttttgttttttttgcaattgCTTTTTA
ttaacttaaaggttttgtgtTTGAATAacagtgatatcgtttgcttactc
atcaattttaagtCACAAGCTTTTTGgaatattgaattgacacggatgtg
gagcaagattggtcagagaaaagaaaaacatttttttgctcatatCAGCA
CAGTaaaacaataggcagacactgtcctggtatAAAACATGTGTCTCATA
TGAAatggaaacacttatgtaaaaacaaaaccttaggCTCGTAAACTCAC
TTAGTTTCAGATATTCATTCTTTGTCTAGATCCATGCAAATCGTCACCGT
GTGTTCGAGGAGTTTGTCACAAGAGTGGTCCATTGGATTACGTATGTGTT
TGTCCAAAAGGTTTCAATGGATTGAACTGTGGAAAAGGTTAGTGATTAGA
AGATTGGACACATGTTCTattaggcttttccagaaaaaactttaccccca
ctgttgaggatattgatttttcgaagtatcgaactcCCTGGATATcatct
cttataaagatgcttaccccctgGATCTCGTATTTTcaacttgaaaagac
actttacccctgaatatccgctcccttgttgACATTtattaaccccctgg
atatccacttttgaacacaAATTAGATATCCAATATCCTCAGCAtggggg
ggggcacggactatttctggaaaagcctatcGTCATTCTCTCAAAAGGAT
GGTTGAGAAGGCAGTTCTTTTAAATCCAGGGATTGAACCACTTATTGGGG
ACAAGCTGCTTTTGTAAGGCTTTTAATCACATTGTATCTTTTTCCGGCCA
ATATCACGTGAAAATATATATAtcatattttaaattattttaccGACCAC
GCCACCCATGGCTGTACGTACGTCActgaaattttgcttttttttactAA
CTTTCTGTCACACTTAAACCATACAGTAATCCAAAAAAATACgtacactc
ccttctcacagaatTTTATCAGgaagtggggataaaaataacggaacAAA
GCTCAATGGGGATAAATTTTCCCGTGTTTTTAAAGACTGGGGATtagaat
tccattgttttctagccagaaaattcagtgaggatAGAAAAAAaccacaa
tattttgcagtgaggatttgcttatccgattattttcagcgggaacaaaa
attagagtatagtTTTACatcggggacgatattttggccactttttccag
tgggaagggttcgcagtgggtctgtgagaagggggtgtataccTACGTCA
ACTCAACCACTAAACACTTCTATATTGTCCTCACATTACTTCACGTAGAC
TGTGTGATTTTCACCAAGACCGTGTATTTATGTTCGAACAACTAAATCAC
GTGTATCTGATTCCCGGTGGgtggggggtactacccttgccgacctaCGG
GTGTGTGTGTTTATCCAAATTCCTCCAAAAAGGTACCCCGAGAGGGACtg
gtttttctattttgttgtttttgcaaTCCTATCGGGGACTCTTGCATGGC
CTCCGGCGTTTgaatcgaattgagggggccaaaaaaaatatgtcgcccac
catggttgggcgacgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCTCCCG
GGATCTGATTACTTTTACCCATTTTAACAGCAATAATTTTGGAGTTGAAG
TTCTCTCTATCGGGGAATAGGCCTGGAAATATTCGAAATATTGTCGGGAA
TAGTGTTTCAGAAAATAGTAttgtataaatttcaaatttccgtGTATAGA
TTGTATTAattgaatgtttcttttttgtttttccaaatttcagcTTGTTC
ATCTGGTGTATGCTGAGAAGAAGAACTTACACATTGTTATATAATATTTT
GTGAAAGTTATAAATCAATATAAAGTTTTGTATAATATTTTGTGAAAGTT
ATAAATCAATATAAAGTTTTGTCAAATTTAATCAAAATTGCTGATCATTT
CTAATAGTAGGGGGCATAAATAGTCGATAGATATAGTCGATTTCTCGAGA
AAATTAATGTCAAAATTCTTAAAGGAAGagattttggcgggaattcaatt
tggcgaatgaaggacatttttttccaaaaacaccattaaaaaagtaaaaa
cctgttttaaaacCTGAAATAACACACATTCGGGGGAATAAATAGAGCCA
Tttaaatttggcaggaatttaatttggcgggtgacggaaaaaattaaatc
cgccaattaagttcccgccaaaattccTGCCCTTAAGGTACGTCATTTTC
GGTCGATTTACTAGAGTTACGTTGAGAAACAACTTTGTTTCACTTAAAAG
TCCCCTATAtcgttttttgagagctttcgattagaatacagtaaaacctc
caattaacggacactctaaaaggcggacacctctgattagcggacaattc
tattttccccagtcatttcctagtcaaatcctcataaaaaattttcctaa
aggcggacactcaattagcagACACTGTAATTAGCGGACAAAGATTTTTG
CACGAAATGGTCAAAACCCTACTTTTTCCTCTCTAATTAACGGACTTTAA
GAAATTAGACAGGATTGATTTATCCAAACTAGTTATTTCTTGAACACTTC
AAAGTTTCATTGAAGAAATTACTTATAGACGTTTGGAGCCTTAATTATCC
AGTCACGGTGAATTTTCTTACatcataaaaatgataaattacaAGGACCT
CTAAACTACTATGATTTAATATATACTGAGATTTGAAACAATGTCTTACC
cctagagagacttttttttacaagtttttctctcgaaatcaaaactaacc
cttcgagcatcttggGGAGTTGCCCCCCCCCTCccaaaaaatatagaaaa
ttttcgataacttttgaaatctttattcAATTAGGTTTAAATCAgccatt
tatttttttttttttcagcaatttttttatttaattgacttgaaattttg
aaagtgtGCATCAAATATgaattgtcatttttttttcacaataatttttt
ttgctcaaatctTTTAAGGCAGCTCCACGTGACATGTTTTTTTAGGGCAG
AGGGTAAATCTTTTGCCCCCTGTTGGTatagtgtattttacagaccggcc
cAAAATTGCCATTTTTTGGCTAAACAGCCCTAGCATACTGTATCTAGTGA
TTTgaaaatgctattgacttgaaattttatcAAGTGTTAGATATTGATGA
TACAAGCTTACAgcaaaaatttcagcaaaatctgaTGAGTggttatgctg
aaagtgagcaCTTTAGGTAAAAAacggaccggtctgtaaaataccaacca
ccTACGCGACTaaattgaaactttgcacactGTCTTAAATGGTCAATATC
tatcactggtgaaaattttcaagaataaaaaaaaattaaaattattagAG
TAATATTTAACATTGTTTGAAAAGCTGTTAGTAAATTGTTGTAACAATAT
TCGAAAGTGCAAACATTGAAAAATGTTAATATTAGGGTAAGGTTCTAATC
ATAAAGCTTCTGCAGAAATTCATTATAACGTTTGAAGCAAAGAAGTGACA
TTTCTTATGACTTACGAAGCTACGAATAAAGTATGAAATTATCAAAGatt
tttgtgatatttttgGTTTTGTCAGTGTTTCTGTACACCATTGATGGAAG
CAGCAGAAGAAGTAGGCGAAGCAGTAGGCGGAGTAGGCGAAGCAGTAGAA
GGGGTTCACACGGAAAGAAATGTGTGTTATCAGGTATAAGttctctacaa
ttttttttttggtcataGTTTAGCTAAAATGAACATGTAGACTTTCAGGT
AATCGCGCCCCacatattttgaatttcgattatcataaaaaagatatttt
tattgCTTGTTCATCACAAGTAGAAACTTTGTTGGTTAATCGAGATTTCC
GTCGTTCGAAGTGgggttcaaaaaaattttcctttacaGATTTTATTTTC
CCATAAGACACATGTTTCCTATCAGGATGTTGTCTATTTATTGTTATaat
tgtgctgaataaacaaaaaatgtttttcttttcctctttctggccaACCT
tgttccacatccgtgtcaattctatttgaaaaagcttgtaatgagtaagc
aaacgatatcactcatatttaaaaacaaaacctttaggACCTAGTAACAA
AGAAGAACATAAGTCCGTGAGGCCAttgcaaaaaacatttttgtaaacac
AGGTCAGATTCTATATACAAAACTATATACAATAAAAGGCAGTAAAAACT
GATGCGGAAatatggcgttctaaatctagatCTACAAAAAGGACAAAAAG
TGATATAGTAATTGTAGTGTGTTATATACCCTGCCTGACTGAATCGTTTA
TCTTTTTTACGAACTTTTAAGCCTGGAGTTCATGGTCATCTTGCTCGTGT
TTACGACCAGTAGAACGATCAAGATCAAGAATCATTGTCGACCCTGGAAC
ATATTGTGATGAGAGATTAACAGAGAAGCAATGGTGCCCTTTAATTTGGT
GTTTTCCGGCCCTCACTGGAAAATATTGTGATCGAAATACTGAAAAATGC
AAATGCAGAAGCGGATACCGTAAGTCTAATTTTCAATCTGCTCTATAGAA
AAAGGTTCAATTCCGGGGCAAAATGTCCGTTGACTTTTCAAAAAGTCCTC
TTCCTCAGGGAGGGGGGCACTCAGGCAAAATTGAGTAGAGAGACGTGTCG
CTTTTCAGGGTCTCTtatttaggctctgaagatatctaacAAATTATGGt
agaaattagaaatttcaaactttccgTTTACTTTTAGTTATTTTGGCCAC
TTTCAGAAAATAggaaattttttcgatttttctttctgaaagggtcccga
attaacttttcaaactccagcagCACGTCCCGTCCGACACAGCCGTCAAG
ATCAGTGACCGCCCCCGGTCCTCTCTCCTCAATACTGTGTCACTAAGCTT
CTACACACGCAACATGAATTTCCCTAAACACCAGGCAATATTATTGAGTA
ATCCGGGATTTTGTCTGCGAAAccttttttctcatcttcagcatagattt
aaGATTTGAAATTGGTATAATGAAAACCAGCAAATAATATTATTATTGAG
ATTTCTgaatattgttttcatttttttccttttcattataatttctaaat
aaaattttttttctcaaaaacttcAGTGTTTAAATTATCTAATAGTACCT
TAAACTATTGAGAATGGGCTTTCGCATGCTCACGTACCATTGTATTGCTT
TCTTCTTATTCCACGTTTCAAAAAAAGGTGACTACATACAAttcaaatat
aaattttttagaGCCGGACTGGAGAAAGGTATGTAGAGATATTGACGAAT
GCAAGAAAGCAAACCTCTGTAAAAATGGTGCAGAATGTCACAACACAGAA
GGTTCTTTTACTTGCAAATGTCAACCTGGATTCAAAGGAAAGAATTGTGA
AACCAATGTCAACGAATGTCACTCTTCTCCTTGCCAAAACAACGGAGTTT
GTGTTGATGGCATCAATGATTATACATGCAAATGTCAAACTGGATTCAAA
GGAAAGGATTGTGAAACCAATGTCAACGAATGTCAACCATCTCCTTGCCA
AAACAATGGAGTTTGTGTTGATGGTATCAATGATTATACTTGCAAATGTC
AACCTGGATTCACAGGAAATAATTGTGACACAAATGTCAACGAATGTCAA
TCAACTCCTTGCAAAAACAAAGGAGTTTGTGTTGATGGTATCAATGATTA
TACTTGCAAATGCCAGCCTGGATTCAAAGGAAAGAATTGTGAAACCAATG
TCGACGAATGTCAATCATCTCCTTGCCAAAACAACGGAGTTTGTGTTGAT
GGTATCAATGATTATACTTGCAAATGTCAACCTGGATTTACAGGAAAGAA
TTGTGAAACCAATGTCAACGAATGTCAATCATCTCCTTGCCAAAACAATG
GAGTTTGTGTTGATGGTATAAATGATTATACATGCAAATGTCGACCTGGA
TTCAAAGGAAAGAATTGTGAAACCAATGTCAACGAATGTCAATCATCTCC
TTGTCAAAACAATGGAGTTTGTGTTGATGGTATCAATGATTATACTTGCA
AATGTCAACCTGGATTCACAGGAAAGAATTGTGAAACCAATGTCAACGAA
TGTCATCCATCTCTTTGCCAAAACAACGGAGTTTGTGTTGATGGTATCAA
TGATTATACTTGCAAATGTCAACCTGGATTCACAGGAAAGAATTGTGAAG
CCAATGTCAACGAATGTCAACCATCTCCTTGCCAAAACAATGGAGTTTGT
GTTGATGGTATCAATGATTATACTTGCAAATGTCAACCTGGATTCACAGG
AAAGAATTGTGAAGCCAATGTCAACGAATGTCAACCATCTCCTTGCCAAA
ACAATGGAGTTTGTGTTGATGGTATCAATGATTATACTTGCAAATGTCAA
CCTGGATTCACAGGAAAGAATTGTGAGACCAATTTCAACGAATGTCAATC
ATCTCTTTGCCAAAACAATGGAGTTTGTGTTGATGGTATCAATGATTATA
CTTGCAAATGTCAACCTGGATTCACAGGAAAGAATTGTGAAACCAATGTC
GACGAATGTCAACCATCTCTTTGCCAAAACAATGGAGTTTGTGTTGATGG
TATCAATGATTATACTTGCAAATGTCAACCTGGATTCACAGGAAAGAATT
GTGAAACCAATGTCAACGAATGTCAACCATCTCTTTGTCAAAACAATGGA
GTTTGTGTTGATGGTATCAATGATTATACTTGCAAATGTCAACCTGgatt
cacaggaaaaaattgtGAAACCAATGTCAACGAATGTCAACCATCTCTTT
GCCAAAACAACGGAGTTTGTGTTGATGGTATCAATGATTATACTTGCAAA
TGTCAACCTGGATTCACAGGAAAGAATTGTGAAACCAATGTCATCAAATG
TCAAACAAATCCTTGTAAAAATCAAGGTATCTGTAAAGAAACAAGTCAAG
GATACAGCTGCACCTGCTTAGTCGGATGGCAAGGGAAGAATTGTGAAACG
AAGACCAACCCTTGCACTTCAAAACCGTGTGAAAATGAAGGAATTTGCTC
AGTCAAGGAGAACAATACTTATTTCTGTCAATGCAAAGATGGTTGGTCTG
GTCAAAACTGTGAAGTTGAGAGGAACGAGTGCGATTCGTCACCTTGTGTG
AATGCATTTCAATGTATAGATGGTAAAAATGATTACACTTGTGTTTGCAA
ACCAGGATGGGAAGGTAAAAGATGTCAATACAACAAAAACGAATGTGCTT
CATCACCATGTATCAATGCATTCACTTGTCAAGATTTGTTGAATGATTAT
CGATGTTTCTGTCGACCCGGATGGAAGGGAAAGAATTGTGACCAACAAAT
TCCAGgtgattgttatgttttcacacttttttttatctggATGGGGTTCG
AATACTTACCCAATAGAATTGATGCTTAAGCCCCTAATGTCAAACATAAT
AATAGGATCCATTTAGCTTTTATCTTCTATTTCATTCCTTTGATCAATTT
TGGTCATGAATTATTATGTGGCAAGGTTTGACCGCTTGACAATGTTATCC
TTTTTAGATAGATTAGGCCAACTTTAACAGGAAAGGAGGAAAATTTTGAC
ATCTTTGTACAAAGAAAATATAGAACTTTGACGTGGATCCTTAAATAAAA
CATCAAGATTGGTAAACTGGTTCAGAAAGTATGAACATTCCAGTTTTGCC
TGTAAAGGCTTataaatgacgtcatgaaaaaacattaaaccttcataact
tttgatgttttatacctggattttcatcagaatttcatgcCCACTGGTAC
CATcatgattttaaatattttcaaaacaaaaaggataattttttccaaaa
cacccGATGACGTCAGTTCACAATATAGTTTTAATCCGTACCCAAATTCC
CTGCTTTTATCTGAAGTATTGTCACGTACAGACTCCACTACTGTCTTCGA
TAGTTTGGAAAAGAAGATTATATACTTGTACGTCTCACGAACGTGGTaac
atcaaatttttaaaacaaacatCTTAAGGTATAAAAAATGGGGGCTTGCA
AAAAACTGaacataaataataaaatataaataaaatggcGGCATAAGGAA
GCAATATTTGAAATCCTATTGCACATTTCATCAACTTTCATCCAGCTTAT
GACCAACGTATGGATGAGACTGGTTTTTTTGGGGCACGTCGAGGGGGTGC
GAACCCCCCTTGTAGATACTTTGTGACTGTTCTATAAACGTTATCAAAAG
TTCTTAATAAAAGGATTAGAAACGCCATACCTTCCTTGACGTTTTATTCA
TTCTTTGTCTAGATCCATGCAAATCATCACCGTGTGTTCGAGGAGTTTGT
CACAAAAGTGGTCCATTGGATTACGTATGTGTTTGTCCAAAAGGTTTCAC
TGGATTGAACTGTGGAAAAAAGTAAGCGTATTCATtaataggcggtttta
gaccatgtcgaacttatcagtTGAAGAAAtttataatacaccttttcggc
ccactaaaaccgtcccagttcTATTTTCGCACCTATAAACAATaggaaaa
tgtgtcaaaaaggattggatcgagtttagtgggatagaagtggcacgcac
ctgaccgcgccactacggtcgaaaaggtgtattgtaatTTCATTGCCTTT
TAGCGAACATTGCACTCATTTGCATGTTTCCgaattaaatattaaaaaaa
atcattaaatccGCCAGTGCGTATCATATTTCTATTCGAATGAATGTAGT
GTGTCTAGCCGAAGCGGAACAGGTTATTTGCGGACCAAATTATTCAATAA
ATCTCAAAAACCCATCAAAATTATGCTGGGAATCGCTTTCTATTGATTGa
ctataaaaattttaaaatcagtaAGATAATTACTGTAGTtcagaaatttt
aataaattttaatcTGTTTGGTTTTATAGAACACTCAATCTCTGATGAAT
GCTGGAATGCACAATACAGATCAACCATGATAATGATATAAgaaatattg
ttaaaaaaatattttaacagtTTTGGAAATTCAgaatacataaagatatc
cttagaaaaaaataaatgctTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034213	XLOC_034213	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_242	supercontig	scaffold_242:954262..969333 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.186417	0	0	0	0.0393503	0	0.0709292	0.129477	0	0	0.147399	0	0.521174	0.586406	0.490794	0.646813	0	0.605767	3.49903	2.05165	1.09188	1.18202	0.835414	0.75427	0	0	0	0.0794899	0.332678	0.228892

Blast

[Close]

BLAST of TCONS_00054239 vs. Swiss-Prot (Human)
Match: NOTC2 (Neurogenic locus notch homolog protein 2 OS=Homo sapiens GN=NOTCH2 PE=1 SV=3)

HSP 1 Score: 566.614 bits (1459), Expect = 4.406e-175
Identity = 312/756 (41.27%), Postives = 421/756 (55.69%), Query Frame = 2

Query:  680 CKCRKGHDRTTATTCVD-INECLRSPCRNGGACMNRVSSYYCQCPKGWTGRNCETNVNECQSSPCQNNRVCVDGINDYTCKCQPGFTGKNCETNVNECQSTTCQNNGVCVDGIND-------------------------------------YICKCQPGFKGKNCETNVNECQSSPCQNNGVCVDGINDYTCKCRPGFKGNNCETNFNECQSSPCQNNGACVDGINDYTCKCQPGFTGKNCETNVNECQSSPCKNNGVCVDGIN--DYTCKCQPGFKGKRCETNVNECQSSPCQNNGVCVDGINDYTCKCQPGFKGKNCETDVNECQSSPCKNKGVCVDGINDYTCKCQPGFKGKNCETDVNECQSSPCQNKGVCVDGINDYTCKCQPGFKGKNCETDVNECQSSPCQNKGVCVDGINDYTCQCPAGFKGKNCETDVNECQSSPCQNKGVCVDGINDYTC*CPAGFKGKNCEVNVNSCKPSPCKNQGICQETSQGYSCTCLVGWQGKNCETKINPC----------TSKPCENDGICSVKENNIYFCQCKDGWSGQNCKVERNECDSSPCVNAFQCIDGKNDYTCVCKPGWEGKRCQYNKNECASSPCVNAFTCQDLLNDHRCFCRPGWKGKNCDVNIDPCFKN-QCQNNGSCHAIGSGYRCMCPNSWIGRHCEKKA-SCTPNTCSGNGR--CLTKAGGYVECFCDKGYRGRYCEFEKDPCKSSPCVRG---VCHKSGPLDYVCVCPKGFTGLNC 2776
            C C  G+       C D I+EC  SPC N G C++ V+ Y C C  G +G NCE N ++C S+PC +  +C+DGIN Y+C C PGFTG+ C  +++EC S  C+    C++G+N                                      Y C C  G+ G NCE + NEC S+PCQN G C + +N Y C C+ GFKG NC+ N +EC S+PC N G C D I+ YTC C   +TGKNC+T +  C  +PC+N  VC +  N   YTC C PG++G+RC  +++EC S PC N+G+C +    Y C+C PGF G +CE D+++C ++PC+N G C+DG+N ++C C PGF G  C+TD+NEC S PC+N G C D +N YTCKCQ GF G +CE ++NEC  S C N G CVDGIN ++C CP GF G  C  ++NEC S PC N+G CVDG+  Y C CP G+ GKNC+  VN C  SPCKN+G C +      C C  GW G  C+     C              C++ G+C +   N ++CQC  G++G  C+ + +EC S+PC +   C D    Y C C PG++G  C+Y  +EC + PC N  TC DL+N  +C C PG +G  C+ NID C +   C N G C     GY C C   + G  CE     C  N CS  G   C+     Y+ C C   + GR+CE   D C   PC+ G       + P  ++C CP GF+G  C
Sbjct:  593 CICNPGY---MGAICSDQIDECYSSPCLNDGRCIDLVNGYQCNCQPGTSGVNCEINFDDCASNPCIHG-ICMDGINRYSCVCSPGFTGQRCNIDIDECASNPCRKGATCINGVNGFRCICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDKNECLSNPCQNGGTCDNLVNGYRCTCKKGFKGYNCQVNIDECASNPCLNQGTCFDDISGYTCHCVLPYTGKNCQTVLAPCSPNPCENAAVCKESPNFESYTCLCAPGWQGQRCTIDIDECISKPCMNHGLCHNTQGSYMCECPPGFSGMDCEEDIDDCLANPCQNGGSCMDGVNTFSCLCLPGFTGDKCQTDMNECLSEPCKNGGTCSDYVNSYTCKCQAGFDGVHCENNINECTESSCFNGGTCVDGINSFSCLCPVGFTGSFCLHEINECSSHPCLNEGTCVDGLGTYRCSCPLGYTGKNCQTLVNLCSRSPCKNKGTCVQKKAESQCLCPSGWAGAYCDVPNVSCDIAASRRGVLVEHLCQHSGVC-INAGNTHYCQCPLGYTGSYCEEQLDECASNPCQHGATCSDFIGGYRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGTRGLLCEENIDDCARGPHCLNGGQCMDRIGGYSCRCLPGFAGERCEGDINECLSNPCSSEGSLDCIQLTNDYL-CVCRSAFTGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARC 1342

HSP 2 Score: 556.984 bits (1434), Expect = 1.004e-171
Identity = 292/695 (42.01%), Postives = 409/695 (58.85%), Query Frame = 2

Query:  734 NECLRSPCRNGGACMNRV--SSYYCQCPKGWTGRNCETNVNECQ---SSPCQNNRVCVDGINDYTCKCQPGFTGKNCETNVNECQSTTCQNNGVCVDGINDYICKCQPGFKGKNCETNVNECQSSPCQNNGVCVDGINDYTCKCRPGFKGNNCETNFNECQSSPCQNNGACVDGINDYTCKCQPGFTGKNCETNVNECQSSPCKNNGVCVDGINDYTCKCQPGFKGKRCETNVNECQSSPCQNNGVCVDGINDYTCKCQPGFKGKNCETDVNECQSSPCKNKGVCVDGINDYTCKCQPGFKGKNCETDVNECQSSPCQNKGVCVDGINDYTCKCQPGFKGKNCETDVNECQSSPCQNKGVCVDGINDYTCQCPAGFKGKNCETDVNECQSSPCQNKGVCVDGINDYTC*CPAGFKGKNCEVNVNSCKPSPCKNQGICQETSQGYSCTCLVGWQGKNCETKINPCTSKPCENDGICSVKEN-NIYFCQCKDGWSGQNCKVERNECDSSPCVNAFQCIDGKNDYTCVCKPGWEGKRCQYNKNECASSPCVNAFTCQDLLNDHRCFCRPGWKGKNCDVNIDPCFKNQCQNNGSCHAIGSGYRCMCPNSWIGRHCEKKA-SCTPNTCSGNGRCLTKAGGYVECFCDKGYRGRYCEFEKDPCKSSPCVRGVCHKSGPLDYVCVCPKGFTGLNCGKKTLNL 2797
            + C+ +PC  G  C        Y C CP+G+ G +C  +V+EC    S+PC++   CV+    + C+C  G+ G  CE ++NEC S  CQN+  C+D I  + C C PGFKG +CE  +NECQS+PC NNG CVD +N + C C PGF G  C+ + ++C S+PC N   C+D  N Y C+C  GFTG  CE N++ C   PC ++G C DGI+ YTC C PG+ G  C   ++EC SSPC N+G C+D +N Y C CQPG  G NCE + ++C S+PC + G+C+DGIN Y+C C PGF G+ C  D++EC S+PC+    C++G+N + C C  G    +C + VNEC S+PC + G C  G++ Y C C AG+ G NCE D NEC S+PCQN G C + +N Y C C  GFKG NC+VN++ C  +PC NQG C +   GY+C C++ + GKNC+T + PC+  PCEN  +C    N   Y C C  GW GQ C ++ +EC S PC+N   C + +  Y C C PG+ G  C+ + ++C ++PC N  +C D +N   C C PG+ G  C  +++ C    C+N G+C    + Y C C   + G HCE     CT ++C   G C+     +  C C  G+ G +C  E + C S PC+       G   Y C CP G+TG NC +  +NL
Sbjct:  377 DACISNPCHKGALCDTNPLNGQYICTCPQGYKGADCTEDVDECAMANSNPCEHAGKCVNTDGAFHCECLKGYAGPRCEMDINECHSDPCQNDATCLDKIGGFTCLCMPGFKGVHCELEINECQSNPCVNNGQCVDKVNRFQCLCPPGFTGPVCQIDIDDCSSTPCLNGAKCIDHPNGYECQCATGFTGVLCEENIDNCDPDPC-HHGQCQDGIDSYTCICNPGYMGAICSDQIDECYSSPCLNDGRCIDLVNGYQCNCQPGTSGVNCEINFDDCASNPCIH-GICMDGINRYSCVCSPGFTGQRCNIDIDECASNPCRKGATCINGVNGFRCICPEGPHHPSCYSQVNECLSNPCIH-GNCTGGLSGYKCLCDAGWVGINCEVDKNECLSNPCQNGGTCDNLVNGYRCTCKKGFKGYNCQVNIDECASNPCLNQGTCFDDISGYTCHCVLPYTGKNCQTVLAPCSPNPCENAAVCKESPNFESYTCLCAPGWQGQRCTIDIDECISKPCMNHGLCHNTQGSYMCECPPGFSGMDCEEDIDDCLANPCQNGGSCMDGVNTFSCLCLPGFTGDKCQTDMNECLSEPCKNGGTCSDYVNSYTCKCQAGFDGVHCENNINECTESSCFNGGTCVDGINSF-SCLCPVGFTGSFCLHEINECSSHPCLNEGTCVDGLGTYRCSCPLGYTGKNC-QTLVNL 1066

HSP 3 Score: 545.428 bits (1404), Expect = 8.229e-168
Identity = 302/780 (38.72%), Postives = 420/780 (53.85%), Query Frame = 2

Query:  725 VDINECLRSPCRNGGACMNRVSSYYCQCPKGWTGRNCETNVNECQSSPCQNNRVCVDGINDYTCKCQPGFTGKNCETNVNECQSTTCQNNGVCVDGINDYICKCQPGFKGKNCETNVNECQSSPCQNNGVCVDGINDYTCKCRPGFKGNNCETNFNECQSSPCQNNGACVDGIN-------------------------------------DYTCKCQPGFTGKNCETNVNECQSSPCKNNGVCVDGINDYTCKCQPGFKGKRCETNVNECQSSPCQNNGVCVDGIN----------------------------------------DYTCKCQPGFKGKNCETDVNECQSSPCKNKGVCVDGINDYTCKCQPGFKGKNCETDVNECQSSPCQNKGVCVDGINDYTCKCQPGFKGKNCETDVNECQSSPCQNKGVCVDGINDYTCQCPAGFKGKNCETDVNECQSSPCQNKGVCVDGINDYTC*CPAGFKGKNCEVNVNSCKPSPCKNQGICQETSQGYSCTCLVGWQGKNCETKINPCTSKPCENDGICSVKENNIYFCQCKDGWSGQNCKVERNECDSSP----------CVNAFQCIDGKNDYTCVCKPGWEGKRCQYNKNECASSPCVNAFTCQDLLNDHRCFCRPGWKGKNCDVNIDPCFKNQCQNNGSCHAIGSGYRCMCPNSWIGRHCEKKAS--CTPNTCSGNGRCLTKAGGYVECFCDKGYRGRYCEFEKDPCKSSPCVRGVCHKSGPL-------DYVCVCPKGFTGLNC 2776
            +DI++C  +PC NG  C++  + Y CQC  G+TG  CE N++ C   PC + + C DGI+ YTC C PG+ G  C   ++EC S+ C N+G C+D +N Y C CQPG  G NCE N ++C S+PC  +G+C+DGIN Y+C C PGF G  C  + +EC S+PC+    C++G+N                                      Y C C  G+ G NCE + NEC S+PC+N G C + +N Y C C+ GFKG  C+ N++EC S+PC N G C D I+                                         YTC C PG++G+ C  D++EC S PC N G+C +    Y C+C PGF G +CE D+++C ++PCQN G C+DG+N ++C C PGF G  C+TD+NEC S PC+N G C D +N YTC+C AGF G +CE ++NEC  S C N G CVDGIN ++C CP GF G  C   +N C   PC N+G C +    Y C+C +G+ GKNC+T +N C+  PC+N G C V++     C C  GW+G  C V    CD +           C ++  CI+  N + C C  G+ G  C+   +ECAS+PC +  TC D +  +RC C PG++G NC+  +D C    CQN G+C  + + ++C CP    G  CE+          C   G+C+ + GGY  C C  G+ G  CE + + C S+P     C   G L       DY+CVC   FTG +C
Sbjct:  531 IDIDDCSSTPCLNGAKCIDHPNGYECQCATGFTGVLCEENIDNCDPDPCHHGQ-CQDGIDSYTCICNPGYMGAICSDQIDECYSSPCLNDGRCIDLVNGYQCNCQPGTSGVNCEINFDDCASNPCI-HGICMDGINRYSCVCSPGFTGQRCNIDIDECASNPCRKGATCINGVNGFRCICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDKNECLSNPCQNGGTCDNLVNGYRCTCKKGFKGYNCQVNIDECASNPCLNQGTCFDDISGYTCHCVLPYTGKNCQTVLAPCSPNPCENAAVCKESPNFESYTCLCAPGWQGQRCTIDIDECISKPCMNHGLCHNTQGSYMCECPPGFSGMDCEEDIDDCLANPCQNGGSCMDGVNTFSCLCLPGFTGDKCQTDMNECLSEPCKNGGTCSDYVNSYTCKCQAGFDGVHCENNINECTESSCFNGGTCVDGINSFSCLCPVGFTGSFCLHEINECSSHPCLNEGTCVDGLGTYRCSCPLGYTGKNCQTLVNLCSRSPCKNKGTC-VQKKAESQCLCPSGWAGAYCDVPNVSCDIAASRRGVLVEHLCQHSGVCINAGNTHYCQCPLGYTGSYCEEQLDECASNPCQHGATCSDFIGGYRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGTRGLLCEENIDDCARGPHCLNGGQCMDRIGGY-SCRCLPGFAGERCEGDINECLSNP-----CSSEGSLDCIQLTNDYLCVCRSAFTGRHC 1301

HSP 4 Score: 526.168 bits (1354), Expect = 4.619e-161
Identity = 300/738 (40.65%), Postives = 409/738 (55.42%), Query Frame = 2

Query:  725 VDINECLRSPCRNGGACMNRVSSYYCQCPKGWTGRNCETNVNECQSSPCQNNRVCVDGINDYTCKCQPGFTGKNCETNVNECQSTTCQNNGVCVDGINDYICKCQPGFKGKNCETNVNECQSSPCQNNGVCVDGINDYTCKCRPGFKGNNCETNFNECQSSPCQNNGACVDGIN--DYTCKCQPGFTGKNCETNVNECQSSPCKNNGVCVDGINDYTCKCQPGFKGKRCETNVNECQSSPCQNNGVCVDGINDYTCKCQPGFKGKNCETDVNECQSSPCKNKGVCVDGINDYTCKCQPGFKGKNCETDVNECQSSPCQNKGVCVDGINDYTCKCQPGFKGKNCETDVNECQSSPCQNKGVCVDGINDYTCQCPAGFKGKNCETDVNECQSSPCQNKGVCVDGINDYTC*CPAGFKGKNCEVNVNSCKPSP----------CKNQGICQETSQGYSCTCLVGWQGKNCETKINPCTSKPCENDGICSVKENNIYFCQCKDGWSGQNCKVERNECDSSPCVNAFQCIDGKNDYTCVCKPGWEGKRCQYNKNECASSP-CVNAFTCQDLLNDHRCFCRPGWKGKNCDVNIDPCFKNQCQNNGS--CHAIGSGYRCMCPNSWIGRHCEKKASCTPNT-CSGNGRCLTKA---GGYVECFCDKGYRGRYCE-----------------------FEKDP------CKSSPCVR-GVCH-KSGPLDYVCVCPKGFTGLNCGKKT 2788
            +DI+EC  +PCR G  C+N V+ + C CP+G    +C + VNEC S+PC +   C  G++ Y C C  G+ G NCE + NEC S  CQN G C + +N Y C C+ GFKG NC+ N++EC S+PC N G C D I+ YTC C   + G NC+T    C  +PC+N   C +  N   YTC C PG+ G+ C  +++EC S PC N+G+C +    Y C+C PGF G  CE ++++C ++PCQN G C+DG+N ++C C PGF G  C+TD+NEC S PCKN G C D +N YTCKCQ GF G +CE ++NEC  S C N G CVDGIN ++C C  GF G  C  ++NEC S PC N+G CVDG+  Y C CP G+ GKNC+T VN C  SPC+NKG CV    +  C CP+G+ G  C+V   SC  +           C++ G+C      + C C +G+ G  CE +++ C S PC++   CS      Y C+C  G+ G NC+ E +EC + PC N   CID  N + C C PG  G  C+ N ++CA  P C+N   C D +  + C C PG+ G+ C+ +I+ C  N C + GS  C  + + Y C+C +++ GRHCE      P   C   G C   +    G++ C C  G+ G  C+                       F   P      C SSPC   G CH +  P  Y C C   F+G  C   T
Sbjct:  681 IDIDECASNPCRKGATCINGVNGFRCICPEGPHHPSCYSQVNECLSNPCIHGN-CTGGLSGYKCLCDAGWVGINCEVDKNECLSNPCQNGGTCDNLVNGYRCTCKKGFKGYNCQVNIDECASNPCLNQGTCFDDISGYTCHCVLPYTGKNCQTVLAPCSPNPCENAAVCKESPNFESYTCLCAPGWQGQRCTIDIDECISKPCMNHGLCHNTQGSYMCECPPGFSGMDCEEDIDDCLANPCQNGGSCMDGVNTFSCLCLPGFTGDKCQTDMNECLSEPCKNGGTCSDYVNSYTCKCQAGFDGVHCENNINECTESSCFNGGTCVDGINSFSCLCPVGFTGSFCLHEINECSSHPCLNEGTCVDGLGTYRCSCPLGYTGKNCQTLVNLCSRSPCKNKGTCVQKKAESQCLCPSGWAGAYCDVPNVSCDIAASRRGVLVEHLCQHSGVCINAGNTHYCQCPLGYTGSYCEEQLDECASNPCQHGATCSDFIGG-YRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGTRGLLCEENIDDCARGPHCLNGGQCMDRIGGYSCRCLPGFAGERCEGDINECLSNPCSSEGSLDCIQLTNDYLCVCRSAFTGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFI-CRCPPGFSGARCQSSCGQVKCRKGEQCVHTASGPRCFCPSPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCELYT 1415

HSP 5 Score: 489.96 bits (1260), Expect = 2.523e-148
Identity = 287/715 (40.14%), Postives = 401/715 (56.08%), Query Frame = 2

Query:  671 TGKCKCRKGHDRTTATTCVDINECLRSPCRNGGACMNRVSSYYCQCPKGWTGRNCETNVNECQ-SSPCQNNRVCVDGINDYTCKCQPGFTGKNCETNVNECQSTTCQNNGVCVD-GINDYICKCQPGFKGKNCETNVNECQSSPCQNNGVCVDGINDYTCKCRPGFKGNNCETNFNECQSSP--CQNNGACVDGINDYTCKCQPGFTGKNCETNVNECQSSPCKNNGVCVDGINDYTCKCQPGFKGKRCETNVNECQSSPCQNNGVC-VDGIN-DYTCKCQPGFKGKNCETDVNECQ---SSPCKNKGVCVDGINDYTCKCQPGFKGKNCETDVNECQSSPCQNKGVCVDGINDYTCKCQPGFKGKNCETDVNECQSSPCQNKGVCVDGINDYTCQCPAGFKGKNCETDVNECQSSPCQNKGVCVDGINDYTC*CPAGFKGKNCEVNVNSCKPSPCKNQGICQETSQGYSCTCLVGWQGKNCETKINPCTSKPCENDGICSVKENNIYFCQCKDGWSGQNCKVERNECDSSPCVNAFQCIDGKNDYTCVCKPGWEGKRCQYNKNECASSPCVNAFTCQDLLNDHRCFCRPGWKGKNCDVNIDPCFKNQCQNNGSCHAIGSGYRCMCPNSWIGRHCE-KKASCTPNTCSGNGRCLTKAGGYVECFCDKGYRGRYCEFEKDPCKSSPCV-RGVCHK--SGPLDYVCVCPKGFTGLNC 2776
            T +C C+ G    T   C   + CL  PC NG  C    + + C+C  G+TG+ CET+VNEC     CQ+   C++    Y C+C  GFTG+ C++    C  + C N G C   G   + C C PGF+G  CE N+++C +  CQN GVCVDG+N Y C+C P + G  C  + +EC   P  CQN G C +    Y C C  G++G +C  N+++C  + C     C+D +  ++C C  G  G  C  + + C S+PC    +C  + +N  Y C C  G+KG +C  DV+EC    S+PC++ G CV+    + C+C  G+ G  CE D+NEC S PCQN   C+D I  +TC C PGFKG +CE ++NECQS+PC N G CVD +N + C CP GF G  C+ D+++C S+PC N   C+D  N Y C C  GF G  CE N+++C P PC + G CQ+    Y+C C  G+ G  C  +I+ C S PC NDG C +   N Y C C+ G SG NC++  ++C S+PC++   C+DG N Y+CVC PG+ G+RC  + +ECAS+PC    TC + +N  RC C  G    +C   ++ C  N C  +G+C    SGY+C+C   W+G +CE  K  C  N C   G C     GY  C C KG++G  C+   D C S+PC+ +G C    SG   Y C C   +TG NC
Sbjct:  128 TYECTCQVGF---TGKECQWTDACLSHPCANGSTCTTVANQFSCKCLTGFTGQKCETDVNECDIPGHCQHGGTCLNLPGSYQCQCPQGFTGQYCDSLYVPCAPSPCVNGGTCRQTGDFTFECNCLPGFEGSTCERNIDDCPNHRCQNGGVCVDGVNTYNCRCPPQWTGQFCTEDVDECLLQPNACQNGGTCANRNGGYGCVCVNGWSGDDCSENIDDCAFASCTPGSTCIDRVASFSCMCPEGKAGLLCHLD-DACISNPCHKGALCDTNPLNGQYICTCPQGYKGADCTEDVDECAMANSNPCEHAGKCVNTDGAFHCECLKGYAGPRCEMDINECHSDPCQNDATCLDKIGGFTCLCMPGFKGVHCELEINECQSNPCVNNGQCVDKVNRFQCLCPPGFTGPVCQIDIDDCSSTPCLNGAKCIDHPNGYECQCATGFTGVLCEENIDNCDPDPC-HHGQCQDGIDSYTCICNPGYMGAICSDQIDECYSSPCLNDGRC-IDLVNGYQCNCQPGTSGVNCEINFDDCASNPCIHGI-CMDGINRYSCVCSPGFTGQRCNIDIDECASNPCRKGATCINGVNGFRCICPEGPHHPSCYSQVNECLSNPCI-HGNCTGGLSGYKCLCDAGWVGINCEVDKNECLSNPCQNGGTCDNLVNGY-RCTCKKGFKGYNCQVNIDECASNPCLNQGTCFDDISG---YTCHCVLPYTGKNC 830

HSP 6 Score: 417.542 bits (1072), Expect = 2.401e-123
Identity = 264/728 (36.26%), Postives = 373/728 (51.24%), Query Frame = 2

Query:  752 PCRNGGACMN-RVSSYYCQCPKGWTGRNCETNVNECQSSPCQNNRVCVD--GINDYTCKCQPGFTGKNCETNVNE--CQSTTCQNNGVC-VDGINDYICKCQPGFKGKNCETNVNECQSSPCQNNGVCVDGINDYTCKCRPGFKGNNCETNFNECQ-SSPCQNNGACVDGINDYTCKCQPGFTGKNCETNVNECQSSPCKNNGVCVD-GINDYTCKCQPGFKGKRCETNVNECQSSPCQNNGVCVDGINDYTCKCQPGFKGKNCETDVNECQSSP--CKNKGVCVDGINDYTCKCQPGFKGKNCETDVNECQSSPCQNKGVCVDGI---------------------------------------NDYTCKCQPGFKGKNCETDVNECQ---SSPCQNKGVCVDGINDYTCQCPAGFKGKNCETDVNECQSSPCQNKGVCVDGINDYTC*CPAGFKGKNCEVNVNSCKPSPCKNQGICQETSQGYSCTCLVGWQGKNCETKINPCTSKPCENDGICSVKENNIYFCQCKDGWSGQNCKVERNECDSSPCVNAFQCIDGKNDYTCVCKPGWEGKRCQYNKNECASSPCVNAFTCQDLLNDHRCFCRPGWKGKNCDVNIDPCFKNQCQNNGSCHAIGSGYRCMCPNSWIGRHCEKKA-SCTPNTCSGNGRCLTKAGGYVECFCDKGYRGRYCEFEKDPCKSSPCVRGVCHKSGPLDYVCVCPKGFTGLNC 2776
            PC N G C+     + YC+CP+G+ G  C+ + + C+ + CQN   CV    +   TC+C  GFTG++C+ + +     S  C N G C +   + Y C CQ GF GK C+   + C S PC N   C    N ++CKC  GF G  CET+ NEC     CQ+ G C++    Y C+C  GFTG+ C++    C  SPC N G C   G   + C C PGF+G  CE N+++C +  CQN GVCVDG+N Y C+C P + G+ C  DV+EC   P  C+N G C +    Y C C  G+ G +C  ++++C  + C     C+D +                                         Y C C  G+KG +C  DV+EC    S+PC++ G CV+    + C+C  G+ G  CE D+NEC S PCQN   C+D I  +TC C  GFKG +CE+ +N C+ +PC N G C +    + C C  G+ G  C+  I+ C+S PC N   C +   N Y CQC  G++G  C+   + CD  PC +  QC DG + YTC+C PG+ G  C    +EC SSPC+N   C DL+N ++C C+PG  G NC++N D C  N C  +G C    + Y C+C   + G+ C      C  N C     C+    G+  C C +G     C  + + C S+PC+ G C   G   Y C+C  G+ G+NC
Sbjct:   34 PCVNEGMCVTYHNGTGYCKCPEGFLGEYCQ-HRDPCEKNRCQNGGTCVAQAMLGKATCRCASGFTGEDCQYSTSHPCFVSRPCLNGGTCHMLSRDTYECTCQVGFTGKECQW-TDACLSHPCANGSTCTTVANQFSCKCLTGFTGQKCETDVNECDIPGHCQHGGTCLNLPGSYQCQCPQGFTGQYCDSLYVPCAPSPCVNGGTCRQTGDFTFECNCLPGFEGSTCERNIDDCPNHRCQNGGVCVDGVNTYNCRCPPQWTGQFCTEDVDECLLQPNACQNGGTCANRNGGYGCVCVNGWSGDDCSENIDDCAFASCTPGSTCIDRVASFSCMCPEGKAGLLCHLDDACISNPCHKGALCDTNPLNGQYICTCPQGYKGADCTEDVDECAMANSNPCEHAGKCVNTDGAFHCECLKGYAGPRCEMDINECHSDPCQNDATCLDKIGGFTCLCMPGFKGVHCELEINECQSNPCVNNGQCVDKVNRFQCLCPPGFTGPVCQIDIDDCSSTPCLNGAKC-IDHPNGYECQCATGFTGVLCEENIDNCDPDPCHHG-QCQDGIDSYTCICNPGYMGAICSDQIDECYSSPCLNDGRCIDLVNGYQCNCQPGTSGVNCEINFDDCASNPCI-HGICMDGINRYSCVCSPGFTGQRCNIDIDECASNPCRKGATCINGVNGF-RCICPEGPHHPSCYSQVNECLSNPCIHGNC-TGGLSGYKCLCDAGWVGINC 754

HSP 7 Score: 278.87 bits (712), Expect = 4.817e-77
Identity = 176/489 (35.99%), Postives = 236/489 (48.26%), Query Frame = 2

Query:  662 YPKTGKCKCRKGHDRTTATTCVDINECLRSPCRNGGACMNRVSSYYCQCPKGWTGRNCETNVNECQSSPCQNNRVCVDGINDYTCKCQPGFTGKNCETNVNECQST------------------------------------------------TCQNNGVCVDGINDYICKCQPGFKGKNCETNVNECQSSPCQNNGVCVDGINDYTCKCRPGFKGNNCETNFNECQSSPCQNNGACVDGINDYTCKCQPGFTGKNCETNVNECQSSP-CKNNGVCVDGINDYTCKCQPGFKGKRCETNVNECQSSPCQNNGV--CVDGINDYTCKCQPGFKGKNCETDVNECQSSPCKNKGVCVDGIN---DYTCKCQPGFKGKNCETDVNE-----------------------------CQSSPCQNKGVCVDGIND--YTCKCQPGFKGKNCE-------TDVNECQSSPCQNK---GVCVDGINDYTCQCPAG 1843
            Y  +  CKC+ G D        +INEC  S C NGG C++ ++S+ C CP G+TG  C   +NEC S PC N   CVDG+  Y C C  G+TGKNC+T VN C  +                                                 CQ++GVC++  N + C+C  G+ G  CE  ++EC S+PCQ+   C D I  Y C+C PG++G NCE   +ECQ+ PCQN G C+D +N + C C PG  G  CE N+++C   P C N G C+D I  Y+C+C PGF G+RCE ++NEC S+PC + G   C+   NDY C C+  F G++CET V+ C   PC N G C    N    + C+C PGF G  C++   +                             C SSPCQ+ G C        Y+C+C P F G  CE       T    C S  C +K   GVC +  N + CQ   G
Sbjct:  967 YVNSYTCKCQAGFDGVHCEN--NINECTESSCFNGGTCVDGINSFSCLCPVGFTGSFCLHEINECSSHPCLNEGTCVDGLGTYRCSCPLGYTGKNCQTLVNLCSRSPCKNKGTCVQKKAESQCLCPSGWAGAYCDVPNVSCDIAASRRGVLVEHLCQHSGVCINAGNTHYCQCPLGYTGSYCEEQLDECASNPCQHGATCSDFIGGYRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGTRGLLCEENIDDCARGPHCLNGGQCMDRIGGYSCRCLPGFAGERCEGDINECLSNPCSSEGSLDCIQLTNDYLCVCRSAFTGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCRKGEQCVHTASGPRCFCPSPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCELYTAPPSTPPATCLSQYCADKARDGVCDEACNSHACQWDGG 1453

HSP 8 Score: 179.874 bits (455), Expect = 1.061e-45
Identity = 137/420 (32.62%), Postives = 197/420 (46.90%), Query Frame = 2

Query:  671 TGKCKCRKGHDRTTATTCVD-INECLRSPCRNGGACMNRVSSYYCQCPKGWTGRNCETNVNECQSSPCQNNRVCVDGINDYTCKCQPGFTGKNCETNVNEC-QSTTCQNNGVCVDGINDYICKCQPGFKGKNCETNVNECQSSPCQNNGV--CVDGINDYTCKCRPGFKGNNCETNFNECQSSPCQNNGACVDGIN---DYTCKCQPGFTGKNCETNVNE-----------------------------CQSSPCKNNGVCVDGIND--YTCKCQPGFKGKRCE-------TNVNECQSSPCQN---NGVCVDGINDYTCKCQPGFKGKNCETDVNECQSSPCKNKGVCVDGINDYTCKCQPGFKGKNCETDVNECQ--SSPCQNKGVCVDGINDYTCKC-----QPGFKGKNCETDVNE 1765
            T  C+C  G+   T + C + ++EC  +PC++G  C + +  Y C+C  G+ G NCE  V+ECQ+ PCQN   C+D +N + C C PG  G  CE N+++C +   C N G C+D I  Y C+C PGF G+ CE ++NEC S+PC + G   C+   NDY C CR  F G +CET  + C   PC N G C    N    + C+C PGF+G  C+++  +                             C SSPC++ G C        Y+C+C P F G RCE       T    C S  C +   +GVC +  N + C+    + G +C   +    ++ C +   C D IN+   +C        C  D  ECQ  S  C+    C D   D  C       + G+ G +C  D  E
Sbjct: 1132 THYCQCPLGY---TGSYCEEQLDECASNPCQHGATCSDFIGGYRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGTRGLLCEENIDDCARGPHCLNGGQCMDRIGGYSCRCLPGFAGERCEGDINECLSNPCSSEGSLDCIQLTNDYLCVCRSAFTGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCRKGEQCVHTASGPRCFCPSPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCELYTAPPSTPPATCLSQYCADKARDGVCDEACNSHACQ----WDGGDCSLTMENPWAN-CSSPLPCWDYINN---QCDELCNTVECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGWDGLDCAADQPE 1540

HSP 9 Score: 114.39 bits (285), Expect = 1.906e-25
Identity = 76/230 (33.04%), Postives = 114/230 (49.57%), Query Frame = 2

Query: 2117 KPCENDGICSVKENNIYFCQCKDGWSGQNCKVERNECDSSPCVNAFQCIDGK--NDYTCVCKPGWEGKRCQYNKNE--CASSPCVNAFTCQDLLND-HRCFCRPGWKGKNCDVNIDPCFKNQCQNNGSCHAIGSGYRCMCPNSWIGRHCEKKAS--CTPNTCSGNGRCLTKAGGYVECFCDKGYRGRYCEFEKDPCKSSPCVR-GVCHKSGPLDYVCVCPKGFTGLNCGK 2782
            +PC N+G+C    N   +C+C +G+ G+ C+  R+ C+ + C N   C+        TC C  G+ G+ CQY+ +     S PC+N  TC  L  D + C C+ G+ GK C    D C  + C N  +C  + + + C C   + G+ CE   +    P  C   G CL   G Y +C C +G+ G+YC+    PC  SPCV  G C ++G   + C C  GF G  C +
Sbjct:   33 EPCVNEGMCVTYHNGTGYCKCPEGFLGEYCQ-HRDPCEKNRCQNGGTCVAQAMLGKATCRCASGFTGEDCQYSTSHPCFVSRPCLNGGTCHMLSRDTYECTCQVGFTGKECQWT-DACLSHPCANGSTCTTVANQFSCKCLTGFTGQKCETDVNECDIPGHCQHGGTCLNLPGSY-QCQCPQGFTGQYCDSLYVPCAPSPCVNGGTCRQTGDFTFECNCLPGFEGSTCER 259

The following BLAST results are available for this feature:

BLAST of TCONS_00054239 vs. Swiss-Prot (Human)

BLAST of TCONS_00054239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NOTC2	4.406e-175	41.27	Neurogenic locus notch homolog protein 2 OS=Homo s...	[more]

You are here

TCONS_00054239 (transcript) - C. hemisphaerica