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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054235 ID=TCONS_00054235|Name=TCONS_00054235|organism=Clytia hemisphaerica|type=transcript|length=1563bp
TTCGTTGATTGGACCTGAAGGAATTTGTCCGACATATTCAAAGTGTTACA
AGAAACTGAATAAACTACTACACGGTAAACACTGTCAAGATTATTTCGAA
GAAAGCCCTAAATGTAAAAGTGGTTGCAGAAAACGTCTTAAAAGGGTCTT
GAAAAGGTTCGCTGGAGTTGAAGATGCGCTAAAAGGCTGCAAGTGCAAAC
AGTACGAGTGTATTACGGCTAAAGCTCGTATTTTTCGTTGCATAAATGAC
AATCAACCACAAGGATTAAAGAGTTTTGCTCACGTTGAGAAGACCTGTTT
AGCAGGAAAGGAGAGCAAGAACTGTAAAAAACTATACACTGATCGTTTTA
ATAACTGCCATGACCTTTACAATGTTGGTGAATGTAATACGAAATGTAAA
GAAGCTAGTGAAAAATTGATTCAAGATAaagttggaaaacattttcaaaa
tgtgGTATGTGATGGAACTTGGGATAAAGAGAAGTTTTGTCGTGAAGTAG
AAGATTTGAGAAACAAATTGTGTTACAAAGTTTGAGGTACAGCTCTGAAC
TTGTTGTAATGATTTGACTTTGGCTGGTGGAATTTTGTTGTTGAAGTGAT
ATTGAacactttaatgggataaattttcacggggattaaatttggcggtt
gagctcatccgcgaaattttaagatttcgcggggacttaattttaCAAAT
GGTGCTATAGAGTGACCAATATTTTGCCTTTTTACGCAAAATTATGCATG
TTGGTTGtcgaaatacgcattattaacGCTTCTTTGAAGCCAGTAAATAC
TATGAAAAtagttattttacatttttcgggtttttctcaaaaacatttgg
CGGATAAggtctttccaaattttcatttggatccgagaaatccgcgaaat
ttaatatccgcgaaaattaatcccataaAAGTACAAAAGCGAAAGAACAA
TACTCGTcgtgaaaaacttaaaaaattcagtaaacTATGGACTGAAACTA
TGGAAAACAAGTAAGGAACACCCATATCGACAAGCCTACTCACTATGTGA
CAAATATTGGAATGATTTCTAAATATAAGAGGGGCGGGTACTTTACTAAA
CGGGAAAATAATGTGAAAATTAGATTATTTTTGCCAACACGTAAGTACTT
ATTAAGCAAAAACAGGGTAGAAATATACTATTTAAAAAGATATGTTGCCA
AATTTTGAAGAGCACCCTTCTATCATGACATGACAGTTTGAGGTGAACCA
AAATAAACTTTCGATTAAAATGTTATACGCTTGTAGTATTTTTTTATATG
ACATTTTATACCTTTTCGTGGAAAATTCTAGGATTTTATCTCTTGAGATT
CATTAAAAACGGGAAAATCTTTTGGTCGGAATCTGAATGAATTCAGTCGG
CAGTTGAAAAGTGTCACTAGCCTAATACATCTAAAAGTTTAACTtcttaa
gttttaagcctaaaatgttcgtATTTTTGGCATTTCCACCGATCTGTCAG
TATTTTTGTGTActtttctgttcttataaaaaacgtgtaatagtGACTTA
CCCAGTCAATTTT Run BLAST on NCBI protein sequence of TCONS_00054235-protein >TCONS_00054235-protein ID=TCONS_00054235-protein|Name=TCONS_00054235-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
SLIGPEGICPTYSKCYKKLNKLLHGKHCQDYFEESPKCKSGCRKRLKRVL
KRFAGVEDALKGCKCKQYECITAKARIFRCINDNQPQGLKSFAHVEKTCL
AGKESKNCKKLYTDRFNNCHDLYNVGECNTKCKEASEKLIQDKVGKHFQN
VVCDGTWDKEKFCREVEDLRNKLCYKV Run BLAST on NCBI transcript from alignment at scaffold_242:839752..841554+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054235 ID=TCONS_00054235|Name=TCONS_00054235|organism=Clytia hemisphaerica|type=transcript|length=1803bp|location=Sequence derived from alignment at scaffold_242:839752..841554+ (Clytia hemisphaerica)
TTCGTTGATTGGACCTGAAGGAATTTGTCCGACATATTCAAAGTGTTACA
AGAAACTGAATAAACTACTACACGGTAAACACTGTCAAGATTATTTCGAA
GAAAGCCCTAAATGTAAAAGTGGTTGCAGAAAACGTCTTAAAAGGGTCTT
GAAAAGGTTCGCTGGAGTTGAAGATGCGCTAAAAGGCTGCAAGTGCAAAC
AGTACGAGTGTATTACGGCTAAAGCTCGTATTTTTCGTTGCATAAATGAC
AATCAACCACAAGGATTAAAGAGTTTTGCTCACGTTGAGAAGACCTGTTT
AGCAGGAAAGGAGAGCAAGAACTGTAAAAAACTATACACTGATCGTTTTA
ATAACTGCCATGACCTTTACAATGTTGGTGAATGTAATACGAAATGTAAA
GAAGCTAGTGAAAAATTGATTCAAGATAaagttggaaaacattttcaaaa
tgtgGTATGTGATGGAACTTGGGATAAAGAGAAGTTTTGTCGTGAAGTAG
AAGATTTGAGAAACAAATTGTGTTACAAAGTTTGAGGTACAGCTCTGAAC
TTGTTGTAATGATTTGACTTTGGCTGGTGGAATTTTGTTGTTGAAGTGAT
ATTGAacactttaatgggataaattttcacggggattaaatttggcggtt
gagctcatccgcgaaattttaagatttcgcggggacttaattttaCAAAT
GGTGCTATAGAGTGACCAATATTTTGCCTTTTTACGCAAAATTATGCATG
TTGGTTGtcgaaatacgcattattaacGCTTCTTTGAAGCCAGTAAATAC
TATGAAAAtagttattttacatttttcgggtttttctcaaaaacatttgg
CGGATAAggtctttttcaaattttcatttggaTCCGAGAAATTTAATATC
cacgaaatttaattcccgcgaaaattaatcccataaAAGTACAAAAGCGA
AAGAACAATACTCGTcgtgaaaaacttaaaaaaattcagtaaactATGGA
CTGAAACTATGGAAAACAAGTAAAGAACACCCATATATTGACAAGCCTAC
TCACTATGTGACAATTATTGGAATGATTTCAAAATATAAGNGGATAAGgt
ctttccaaattttcatttggatccgagaaatccgcgaaatttaatatccg
cgaaaattaatcccataaAAGTACAAAAGCGAAAGAACAATACTCGTcgt
gaaaaacttaaaaaattcagtaaacTATGGACTGAAACTATGGAAAACAA
GTAAGGAACACCCATATCGACAAGCCTACTCACTATGTGACAAATATTGG
AATGATTTCTAAATATAAGAGGGGCGGGTACTTTACTAAACGGGAAAATA
ATGTGAAAATTAGATTATTTTTGCCAACACGTAAGTACTTATTAAGCAAA
AACAGGGTAGAAATATACTATTTAAAAAGATATGTTGCCAAATTTTGAAG
AGCACCCTTCTATCATGACATGACAGTTTGAGGTGAACCAAAATAAACTT
TCGATTAAAATGTTATACGCTTGTAGTATTTTTTTATATGACATTTTATA
CCTTTTCGTGGAAAATTCTAGGATTTTATCTCTTGAGATTCATTAAAAAC
GGGAAAATCTTTTGGTCGGAATCTGAATGAATTCAGTCGGCAGTTGAAAA
GTGTCACTAGCCTAATACATCTAAAAGTTTAACTtcttaagttttaagcc
taaaatgttcgtATTTTTGGCATTTCCACCGATCTGTCAGTATTTTTGTG
TActtttctgttcttataaaaaacgtgtaatagtGACTTACCCAGTCAAT
TTT Coding sequence (CDS) from alignment at scaffold_242:839752..841554+ >TCONS_00054235 ID=TCONS_00054235|Name=TCONS_00054235|organism=Clytia hemisphaerica|type=CDS|length=534bp|location=Sequence derived from alignment at scaffold_242:839752..841554+ (Clytia hemisphaerica)
TCGTTGATTGGACCTGAAGGAATTTGTCCGACATATTCAAAGTGTTACAA
GAAACTGAATAAACTACTACACGGTAAACACTGTCAAGATTATTTCGAAG
AAAGCCCTAAATGTAAAAGTGGTTGCAGAAAACGTCTTAAAAGGGTCTTG
AAAAGGTTCGCTGGAGTTGAAGATGCGCTAAAAGGCTGCAAGTGCAAACA
GTACGAGTGTATTACGGCTAAAGCTCGTATTTTTCGTTGCATAAATGACA
ATCAACCACAAGGATTAAAGAGTTTTGCTCACGTTGAGAAGACCTGTTTA
GCAGGAAAGGAGAGCAAGAACTGTAAAAAACTATACACTGATCGTTTTAA
TAACTGCCATGACCTTTACAATGTTGGTGAATGTAATACGAAATGTAAAG
AAGCTAGTGAAAAATTGATTCAAGATAaagttggaaaacattttcaaaat
gtgGTATGTGATGGAACTTGGGATAAAGAGAAGTTTTGTCGTGAAGTAGA
AGATTTGAGAAACAAATTGTGTTACAAAGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054235-exon-scaffold_242-1491911889:839752..840609 | TCONS_00054235-exon-scaffold_242-1491911889:839752..840609 | Clytia hemisphaerica | exon |
| TCONS_00054235-exon-scaffold_242-1510915933:839752..840609 | TCONS_00054235-exon-scaffold_242-1510915933:839752..840609 | Clytia hemisphaerica | exon |
| TCONS_00054235-exon-scaffold_242-1575043694:839752..840609 | TCONS_00054235-exon-scaffold_242-1575043694:839752..840609 | Clytia hemisphaerica | exon |
| TCONS_00054235-exon-scaffold_242-1491911889:840850..841554 | TCONS_00054235-exon-scaffold_242-1491911889:840850..841554 | Clytia hemisphaerica | exon |
| TCONS_00054235-exon-scaffold_242-1510915933:840850..841554 | TCONS_00054235-exon-scaffold_242-1510915933:840850..841554 | Clytia hemisphaerica | exon |
| TCONS_00054235-exon-scaffold_242-1575043694:840850..841554 | TCONS_00054235-exon-scaffold_242-1575043694:840850..841554 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:839752..841554 + |
Blast
The following BLAST results are available for this feature:
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