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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054228 ID=TCONS_00054228|Name=TCONS_00054228|organism=Clytia hemisphaerica|type=transcript|length=2257bpRun BLAST on NCBI protein sequence of TCONS_00054228-protein >TCONS_00054228-protein ID=TCONS_00054228-protein|Name=TCONS_00054228-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp FIKIGVEMFSRAFSITIEEQLKDNSYNFMNLAKEEAKDVNDQDVKSLLQTRun BLAST on NCBI transcript from alignment at scaffold_242:652059..673022+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054228 ID=TCONS_00054228|Name=TCONS_00054228|organism=Clytia hemisphaerica|type=transcript|length=20964bp|location=Sequence derived from alignment at scaffold_242:652059..673022+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_242:652059..673022+ >TCONS_00054228 ID=TCONS_00054228|Name=TCONS_00054228|organism=Clytia hemisphaerica|type=CDS|length=21840bp|location=Sequence derived from alignment at scaffold_242:652059..673022+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054228 vs. Swiss-Prot (Human)
Match: UGPA (UTP--glucose-1-phosphate uridylyltransferase OS=Homo sapiens GN=UGP2 PE=1 SV=5) HSP 1 Score: 595.89 bits (1535), Expect = 0.000e+0 Identity = 307/516 (59.50%), Postives = 392/516 (75.97%), Query Frame = 2
Query: 17 VEMFSRAFSITIEEQLKDNSYNFMNLAKEEAKDVNDQDVKSLLQTCPSELREEFTQNLTGFQRLFNRFIDEQGREVEWRKISPPPAALIKPHSELKVNDFSTEKIRDMXXXXXXXXXXXXXXTSMGCKGPKSVITVRGDYTFLDMQVQQIEHLNKRYGVNIPLILMNSFNTHDSEDTQKVLRKYTYVNVKIHCFKQSQYPRIYKESLRAVPTDIGTS--ERDCWYPPGHGDMYQAFYNSGLLDQFIKEGKEYVFCSNIDNLGATIDLSILHHLMDPTKTDTEKCEFIMEVTDKTRADVKGGTLIMYEDKLRLLEIAQVPKDHIEDFKAVKKFRIFNTNNLWVKLDAIKRSVENNDLHMEIINNQKQLDNGSKIIQLEMAIGAAIKCFRNSIGINVPRSRFLPVKSCSDLFLIMSNLYTMENGTLLMNPDRQFLTTPLVQLGDYFKKVKDFLGRFENIPDILELDHLTVAGNVKFGRNVTLKGTVIIIAVHGDRIDIPPGSILENKIVSGNLEILNH 1558
V+ S+A S +D + F + ++E + ++++ +L T S E ++L GF++LF+RF+ E+G V+W KI PP I+P+ ++K + I +L+KLVV+KLNGGLGTSMGCKGPKS+I VR + TFLD+ VQQIEHLNK Y ++PL+LMNSFNT EDT+K+L+KY + VKI+ F QS+YPRI KESL V D+ S + WYPPGHGD+Y +FYNSGLLD FI EGKEY+F SNIDNLGAT+DL IL+HLM+P + ++CEF+MEVT+KTRADVKGGTL YE KLRL+EIAQVPK H+++FK+V KF+IFNTNNLW+ L A+KR E N + MEII N K LD G +IQLE A+GAAIK F NS+GINVPRSRFLPVK+ SDL L+MSNLY++ G+L M+ R+F T PLV+LG F KV+D+L RFE+IPD+LELDHLTV+G+V FG+NV+LKGTVIIIA HGDRIDIPPG++LENKIVSGNL IL+H
Sbjct: 5 VQDLSKAMS-------QDGASQFQEVIRQELELSVKKELEKILTTASSHEFEHTKKDLDGFRKLFHRFLQEKGPSVDWGKIQRPPEDSIQPYEKIKARGLP-DNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNT--DEDTKKILQKYNHCRVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVDLYILNHLMNPP--NGKRCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGGLNVIQLETAVGAAIKSFENSLGINVPRSRFLPVKTTSDLLLVMSNLYSLNAGSLTMSEKREFPTVPLVKLGSSFTKVQDYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVLENKIVSGNLRILDH 508 The following BLAST results are available for this feature:
BLAST of TCONS_00054228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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