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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054220 ID=TCONS_00054220|Name=TCONS_00054220|organism=Clytia hemisphaerica|type=transcript|length=1288bpRun BLAST on NCBI protein sequence of TCONS_00054220-protein >TCONS_00054220-protein ID=TCONS_00054220-protein|Name=TCONS_00054220-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp MAKEKSPKRQKNAEESESQPGLCSSLFSTIFWSLWTLLAIVTIAYISFGLRun BLAST on NCBI transcript from alignment at scaffold_242:558257..576684+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054220 ID=TCONS_00054220|Name=TCONS_00054220|organism=Clytia hemisphaerica|type=transcript|length=18428bp|location=Sequence derived from alignment at scaffold_242:558257..576684+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_242:558257..576684+ >TCONS_00054220 ID=TCONS_00054220|Name=TCONS_00054220|organism=Clytia hemisphaerica|type=CDS|length=13986bp|location=Sequence derived from alignment at scaffold_242:558257..576684+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00054220 vs. Swiss-Prot (Human)
Match: ABD12 (Monoacylglycerol lipase ABHD12 OS=Homo sapiens GN=ABHD12 PE=1 SV=2) HSP 1 Score: 160.614 bits (405), Expect = 4.134e-44 Identity = 104/323 (32.20%), Postives = 158/323 (48.92%), Query Frame = 1
Query: 178 IFWSLWTLLAIVTIAYISFGLLMLYSTQMKMEVIFMNRLNQPFFANLSNCNEFGIVKCENIVLDGGQG-KIGAWMISPST--------------DQYITKEAYILYLHGNMGSRALAHRVEMYKKLSRMGYHILTIDYRGFGDSYGSPTEFGLLEDAKIGYKYLKERAHGHATYIWGHSLGSAVGVQLAAWLNTENSRLNGLILEAPFNNMFDGIKHSHLAAPVIPFIPNFDSYIEDVKEV----FKSDYWIKKVFSSTLILHDVSDHILNIKLARKLYFSAKETGSSN---VHMIELNEKL--YHNDIYKAKHFIKYIEEFM 1074
++ L +L V YI+ L+ ++ ++IF+N + P+F +L + G+ N L + IG W P+ D + ILYLHGN G+R HRVE+YK LS +GYH++T DYRG+GDS G+P+E G+ DA + ++K R+ + YIWGHSLG+ V L L + + LILE+PF N+ + K SH + + + P FD + D F +D +K + LILH D ++ +L RKLY A S V + + L H IYK+ + + EF+
Sbjct: 68 VWLRLRKILFCVLGLYIAIPFLIKLCPGIQAKLIFLNFVRVPYFIDLKKPQDQGLNHTCNYYLQPEEDVTIGVWHTVPAVWWKNAQGKDQMWYEDALASSHPIILYLHGNAGTRGGDHRVELYKVLSSLGYHVVTFDYRGWGDSVGTPSERGMTYDALHVFDWIKARSGDNPVYIWGHSLGTGVATNLVRRLCERETPPDALILESPFTNIREEAK-SHPFSVIYRYFPGFDWFFLDPITSSGIKFANDENVKHISCPLLILHAEDDPVVPFQLGRKLYSIAAPARSFRDFKVQFVPFHSDLGYRHKYIYKSPELPRILREFL 389 The following BLAST results are available for this feature:
BLAST of TCONS_00054220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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