TCONS_00054218 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054218
Unique NameTCONS_00054218
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1991

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054218 ID=TCONS_00054218|Name=TCONS_00054218|organism=Clytia hemisphaerica|type=transcript|length=1991bp
ATCTGTCAAAGACATTCTAATCTTCCAAAATGGGTGCAGGATATACACTC
CCCGCCGATATGTTGACGATGAAGAACTGAAGAGACTTGGAAAGCGGTTC
AGGAAGTTGGATACTGATAACTCAGGAACCCTTTCAATTGAAGAGTTTAT
GTCTCTTCCTGAGCTCCAACAAAACCCTTTAGTTCAAAGAGTCATCGAAA
TCTTTGATACAGATGGTAACAAAGAAATTGACTTTCAAGaatttatcgAG
GGAATTTCCCAATTCAGTGTCAAAGGAGATAAAACACAGAAATTAAGATt
TGCATTCAAAATATATGATATCAATCAAGATGGCTTCATTTCAAATGGTG
AACTTTTTACAGTCTTACGTATGATGGTAggaaataatttgaaagaagTT
CAGCTTCAACAAATTGTGGATAAAACTATTTTGCAATTTGACACAGATGG
CGATGGTAAAATTAGTTATGAAGAATTTTGCAATGTTGTTGGATCGATGG
ATGTGGATAAAAAAATGGTTGTTGATGTTTAACAAAGTTCATTGCCTCAA
TCCCAAAGTATATTTATTGATGGTAGTTCTTCCTCGTATGAAATCCAACG
ATGGTGAAATGAAGATGATTTCATTGTGTTTTCTGCAGGAAAACAGGATG
GTTTAGTTTTATTCATATGAAAGTGGATAGAGTTATAAAAGAAGTCTATC
ATTCATTAAATCTTCCTGGCGTGTTGGGAATATCAAGTTAGATGAAAAAT
TTAACTCGAGTTCAACCCATTGAATCAACTTTCAAACAAATGTTTATTGA
TATTGTATGAAATTTTTAATGTAAAATTTAACGATTACtgaaattatcat
ttttttatttggggcatttttcattttctcgtTCAGGATTTattaattca
aaattagtgttattattataaaaattccaacataatttttcatttaaagt
ttTCAGACATTGTcataacaaaatatttattgTGTATTTATTATTTCTTT
GTCGTTTAAAGTATAACCTCGCTCTGGAACTCGAGAATGATAGCTTGAAA
GGAGGCNTCCTGGCTTGTTGGGAATATCAAGTTAGATGAAAAATTTAACT
CGAGTTCAACCCATTGAATCAACTTTCAAACAAATGTTTATTGATATTGT
ATGAAATTTTAATGTAAAATTTAACGATTACtgaaattatcattttttta
tttggggcatttttcattttctcgtTCAGGATTTattaattcaaaattag
tgttattattataaaaattccaacataatttttcatttaaagtttTCAGA
CATTGTcataacaaaatatttattgTGTATTTATTATTTCTTTGTCGTTT
AAAGTATAACCTCGCTCTGGAACTCGAGAATGATAGCTTGAAAGGAGGCT
GAAAAATCTATTAGCATTTTTAGAATCCACTTTGAATTTAAGAAAATGAC
CCTCTGTAACTGTGACGGTTAGATGAACTAAAGTAAttattttcttgatt
tctttaaaaaaaaaagaacattgtCTACAAAATTGCAAGTTTAagattat
tttccatttttaattATTCTAGTacatatatttttgttttaaaatttgtt
ttacaTGCACTTTTTGCCCTAAGTTTGTTAACGATATTGATTTTTCTAGT
ATTTGTgtattattgaaagtttgtctttAGTCTAACTTTAATTTCCTTTT
AACCCAAAAGATTGCATGGTGTATATACCAATTTATGTGCATCAAAAgta
attgattttattttgaagtgagATCGTCCatgaaaattttgtattttcac
tttttgaccCTTCATCTCTTTTGAATTTAGATCTCCATTAATCTCCATTA
CTACAATTAGTCAAAATCATAATCTAATTATCGAGGAAACTTTACTTTGT
GACTACTTACtaaaggtttttcaaaatttattttttggaaattttggttt
ttatgtCTGCTTTTGTGTAAACTATATATCTTTGACTTTAG
Run BLAST on NCBI

transcript from alignment at scaffold_242:546268..550815+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054218 ID=TCONS_00054218|Name=TCONS_00054218|organism=Clytia hemisphaerica|type=transcript|length=4548bp|location=Sequence derived from alignment at scaffold_242:546268..550815+ (Clytia hemisphaerica)
ATCTGTCAAAGACATTCTAATCTTCCAAAATGGTAAGTTCCTTATTTCTA
TAAAATCattatgcaatttttttttcttctcaagTATATAAACCTCTTTC
GGAGTTTCTTATACCCTGTCattttgttcatattttcaccaatttttttg
aaagctctCTATGGGACCAAAGATATGAGTGATTTCATAATTGTGACTCT
ATCAttagctaaaaataaaaagattgaaataaaaaaagtaagttACATTG
TTGATGAATTAGAAACAATAAAATAGTCCTCCTCATTTTATAAAAGTCTA
TAATAGTAAAGTAGTCCTGTTTTCATATCTCTtacaaaaatagagaaaaa
taataatattttaatctttaagttgaggaaatttttttggtccCATAATA
TCATTTACTGTTACTGAAAATAGAgatgtttttgaaataaaaatgatatC
CTCTTTTGTCTTGAAATGTCtgaatttttcttctgtttCATTTACAGGGT
GCAGGATATACACTCCCCGCCGATATGGTGACACATTGTAGGTTTCTTTT
GATGTTGTAGATAAACCTCCTATTCTCTAAAAAGATACATTAGATAAGAC
ATTCTTAATTCTAAAACACTCAATCAATGTCGACCTGTCatatattttta
gtttaaataaaattgggttttttttcaaacaatttttcttttttgagttA
ATGTTATTTAGATACTTTGAACCTATTGTAGCAAGCAGTCTGACCCAGTT
TAACCTATTAAAATGGCTTTTATTCGGGCTTGTAAGTTaggttctttttt
tttctttaacctATACAAAGCTCTTCACCCTATTATGAAATTCTAAATCT
GACAAATAAAGCAATTAGGAgccaaattttagaaaatattaagacgtatc
aaacttttttattagGTTGTAACTTTATTCTTTCAATCTAAATTTTAGTT
GACGATGAAGAACTGAAGAGACTTGGAAAGCGGTTCAGGAAGTTGGATAC
TGATAACTCAGGAACCCTTTCAATTGAAGAGTTTATGTCTCTTCCTGAGC
TCCAACAAAACCCTTTAGTTCAAAGAGTCATCGAAATCTTTGATACAGAT
GGTAACAAAGAAATTGACTTTCAAGGTATTGATTTAGAAAAACTCACTTT
TGTGTTTTTGCCATTTGTGTTGTCGTGTAGTTGAATGACTAGGACTAGGA
GGTCCTCTAGCctctaaaatgttttttaacacttttggTTGCTTTTTAAA
ATCCAATGATATTCTtatgtttttagaatttatcgAGGGAATTTCCCAAT
TCAGTGTCAAAGGAGATAAAACACAGAAATTAAGATGTAAGttaaatttt
gatcaaacaAAAGTGAAAACTCCCTAGTGGAGGATGATGATgtatttaat
ttaattaaatttaattaaaattgGTTTcaataccgggtgtgccacaaaaa
agtttctctctttgaaactagttttctagaaatctaaaaattccaaaaga
accattcctaacattggaagaagaaagataaacttaaattttgatgggcc
atttttatttatcaaatgcaattcattagatcaaaagttatgctcaattc
tgctcgattgaataaaaaagttacttccAGAAAGTGTtcgaaaatgttaa
aaattgacctatcaaatttttatttcaaaattggcaatcgcaacagcctt
tacatgattataagagcatttttaattataattaaatacattaatttaat
ttacttttactgAAATTGTCTTAAGACTTTTTTACTAGAATGGATAAgta
agtctatgtaaggctggatgtacctcgaaacccatatttgatgtattttt
atgaattttaccagatttctTGGCCTTTTAgacaaattttctaaaaatat
actGATGTGTCATGTagttatgcttctgtttaatttgataggttgaCTTA
ATGATTTACactatttttttgtgttttttcagTTGCANgttatgcttctg
tttaatttgataggttgaCTTATTAATTTACactatttttttgtgttttt
ttcagtTGCATTCAAAATATATGATATCAATCAAGATGGCTTCATTTCAA
ATGGTGAACTTTTTACAGTCTTACGTATGATGGTAggaaataatttgaaa
gaagTTCAGCTTCAACAAATTGTGGATAAAACTATTTTGCAATTTGACAC
AGATGGCGATGGTAAAATTAGTTATGAAGAATTTTGCAATGTAAGTTTAC
GTAGACTcttatttttcactttgtttcaGGATTTCATTAATCCTTTCACA
CTTTTATCTTGCCTTAATTTATTAAAATGGGAGGCttaataaagaaaatt
ttttcaaagcttttatCTATTTGAACTTGTCAGATTTTCTACTTTTGATT
TAAGCTTGTTTagggaaatttatttttcttcaatttaaGGCAGTCTTCGA
AAATCATGTGTTCTTGCCTCAGGATTTCTGATTTGTGACTTTTCATTTTT
CCTCTTTTAACTCCCAGTTCACAATAAATTCTATTTATGATCCtaccttt
ttctgaaaaataatcTTGTATAGATTAATAATCAAtaattgttgataaat
tttttgaaggtAAATGGACTATTCCaaagattccaaaaattttttttggg
aaaggtgaccccctggattttttttcgatttctcaGGACCTCCCCTGGAT
TTTCTCTGCTTATTATTTGGACTCCCCTTGGTTTTCGACCTTGTTTCACT
GACCACCCTGGGTTTCAACCTTATTTTactaaccaccctggatttttcac
ttcatttttactgaccaccctggactTAGACGTTCTAAGTCTAGACCCCT
GGATTTTTATTTATCAGACCACCCTGggcgtcacacctcctcaaaaTCCC
CCTATTTTGAGGAGGTGTGATGCCCAGGGTGGTCTGATAAATAAAAATCC
AGGGGATCTAGACTTAAAGCAAAtaagacaaattctggaatatAGCCCAA
TTCAATAATTGCATTTCACTGTATATTTTATCTTACAACAGGTTGTTGGA
TCGATGGATGTGGATAAAAAAATGGTTGTTGATGTTTAACAAAGTTCATT
GCCTCAATCCCAAAGTATATTTATTGATGGTAGTTCTTCCTCGTATGAAA
TCCAACGATGGTGAAATGAAGATGATTTCATTGTGTTTTCTGCAGGAAAA
CAGGATGGTTTAGTTTTATTCATATGAAAGTGGATAGAGTTATAAAAGAA
GTCTATCATTCATTAAATCTTCCTGGCGTGTTGGGAATATCAAGTTAGAT
GAAAAATTTAACTCGAGTTCAACCCATTGAATCAACTTTCAAACAAATGT
TTATTGATATTGTATGAAATTTTTAATGTAAAATTTAACGATTACtgaaa
ttatcatttttttatttggggcatttttcattttctcgtTCAGGATTTat
taattcaaaattagtgttattattataaaaattccaacataatttttcat
ttaaagtttTCAGACATTGTcataacaaaatatttattgTGTATTTATTA
TTTCTTTGTCGTTTAAAGTATAACCTCGCTCTGGAACTCGAGAATGATAG
CTTGAAAGGAGGCNTCCTGGCTTGTTGGGAATATCAAGTTAGATGAAAAA
TTTAACTCGAGTTCAACCCATTGAATCAACTTTCAAACAAATGTTTATTG
ATATTGTATGAAATTTTAATGTAAAATTTAACGATTACtgaaattatcat
ttttttatttggggcatttttcattttctcgtTCAGGATTTattaattca
aaattagtgttattattataaaaattccaacataatttttcatttaaagt
ttTCAGACATTGTcataacaaaatatttattgTGTATTTATTATTTCTTT
GTCGTTTAAAGTATAACCTCGCTCTGGAACTCGAGAATGATAGCTTGAAA
GGAGGCTGAAAAATCTATTAGCATTTTTAGAATCCACTTTGAATTTAAGA
AAATGACCCTCTGTAACTGTGACGGTTAGATGAACTAAAGTAAttatttt
cttgatttctttaaaaaaaaaagaacattgtCTACAAAATTGCAAGTTTA
agattattttccatttttaattATTCTAGTacatatatttttgttttaaa
atttgttttacaTGCACTTTTTGCCCTAAGTTTGTTAACGATATTGATTT
TTCTAGTATTTGTgtattattgaaagtttgtctttAGTCTAACTTTAATT
TCCTTTTAACCCAAAAGATTGCATGGTGTATATACCAATTTATGTGCATC
AAAAgtaattgattttattttgaagtgagATCGTCCatgaaaattttgta
ttttcactttttgaccCTTCATCTCTTTTGAATTTAGATCTCCATTAATC
TCCATTACTACAATTAGTCAAAATCATAATCTAATTATCGAGGAAACTTT
ACTTTGTGACTACTTACtaaaggtttttcaaaatttattttttggaaatt
ttggtttttatgtCTGCTTTTGTGTAAACTATATATCTTTGACTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034197XLOC_034197Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054218-exon-scaffold_242-1491911889:546268..546299TCONS_00054218-exon-scaffold_242-1491911889:546268..546299Clytia hemisphaericaexon
TCONS_00054218-exon-scaffold_242-1510915933:546268..546299TCONS_00054218-exon-scaffold_242-1510915933:546268..546299Clytia hemisphaericaexon
TCONS_00054218-exon-scaffold_242-1575043694:546268..546299TCONS_00054218-exon-scaffold_242-1575043694:546268..546299Clytia hemisphaericaexon
TCONS_00054218-exon-scaffold_242-1491911889:546765..546794TCONS_00054218-exon-scaffold_242-1491911889:546765..546794Clytia hemisphaericaexon
TCONS_00054218-exon-scaffold_242-1510915933:546765..546794TCONS_00054218-exon-scaffold_242-1510915933:546765..546794Clytia hemisphaericaexon
TCONS_00054218-exon-scaffold_242-1575043694:546765..546794TCONS_00054218-exon-scaffold_242-1575043694:546765..546794Clytia hemisphaericaexon
TCONS_00054218-exon-scaffold_242-1491911889:547216..547392TCONS_00054218-exon-scaffold_242-1491911889:547216..547392Clytia hemisphaericaexon
TCONS_00054218-exon-scaffold_242-1510915933:547216..547392TCONS_00054218-exon-scaffold_242-1510915933:547216..547392Clytia hemisphaericaexon
TCONS_00054218-exon-scaffold_242-1575043694:547216..547392TCONS_00054218-exon-scaffold_242-1575043694:547216..547392Clytia hemisphaericaexon
TCONS_00054218-exon-scaffold_242-1491911889:547544..547603TCONS_00054218-exon-scaffold_242-1491911889:547544..547603Clytia hemisphaericaexon
TCONS_00054218-exon-scaffold_242-1510915933:547544..547603TCONS_00054218-exon-scaffold_242-1510915933:547544..547603Clytia hemisphaericaexon
TCONS_00054218-exon-scaffold_242-1575043694:547544..547603TCONS_00054218-exon-scaffold_242-1575043694:547544..547603Clytia hemisphaericaexon
TCONS_00054218-exon-scaffold_242-1491911889:548323..548507TCONS_00054218-exon-scaffold_242-1491911889:548323..548507Clytia hemisphaericaexon
TCONS_00054218-exon-scaffold_242-1510915933:548323..548507TCONS_00054218-exon-scaffold_242-1510915933:548323..548507Clytia hemisphaericaexon
TCONS_00054218-exon-scaffold_242-1575043694:548323..548507TCONS_00054218-exon-scaffold_242-1575043694:548323..548507Clytia hemisphaericaexon
TCONS_00054218-exon-scaffold_242-1491911889:549309..550815TCONS_00054218-exon-scaffold_242-1491911889:549309..550815Clytia hemisphaericaexon
TCONS_00054218-exon-scaffold_242-1510915933:549309..550815TCONS_00054218-exon-scaffold_242-1510915933:549309..550815Clytia hemisphaericaexon
TCONS_00054218-exon-scaffold_242-1575043694:549309..550815TCONS_00054218-exon-scaffold_242-1575043694:549309..550815Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:546268..550815 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.17533	4.44961	7.22325	7.18959	0	0	0	0	0.949393	1.12418	1.05908	0.705747	0.399403	0.0688039	1.23511	0.790956	1.85476	1.99535	1.45551	0.846842	3.52712	5.49323	2.63852	3.36936	0	0.350109	2.15663	2.13269	2.3654	0.979736
Blast
[Close]
BLAST of TCONS_00054218 vs. Swiss-Prot (Human)
Match: CANB1 (Calcineurin subunit B type 1 OS=Homo sapiens GN=PPP3R1 PE=1 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 1.260e-72
Identity = 111/141 (78.72%), Postives = 131/141 (92.91%), Query Frame = 2 
Query:   59 YVDDEELKRLGKRFRKLDTDNSGTLSIEEFMSLPELQQNPLVQRVIEIFDTDGNKEIDFQEFIEGISQFSVKGDKTQKLRFAFKIYDINQDGFISNGELFTVLRMMVGNNLKEVQLQQIVDKTILQFDTDGDGKISYEEFC 481
            + D +E+KRLGKRF+KLD DNSG+LS+EEFMSLPELQQNPLVQRVI+IFDTDGN E+DF+EFIEG+SQFSVKGDK QKLRFAF+IYD+++DG+ISNGELF VL+MMVGNNLK+ QLQQIVDKTI+  D DGDG+IS+EEFC
Sbjct:   14 HFDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFC 154
The following BLAST results are available for this feature:
BLAST of TCONS_00054218 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CANB11.260e-7278.72Calcineurin subunit B type 1 OS=Homo sapiens GN=PP... [more]
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