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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054207 ID=TCONS_00054207|Name=TCONS_00054207|organism=Clytia hemisphaerica|type=transcript|length=1140bp
GTAGAAGTTGCATGTTTGACGGCGAGCCTTGTGACCCTGGTGATTTCTTA
GAAGTGGTATCTGCACATTACGGTCTTTGTTATCAATACAACTCAATCTA
TCTTGACAAAGAACCGTTTAAAGTATCCAGAGGTGGAGAAGGTGCTGGAC
TTCGTTTGTACATGGCTATTCCAGAGGATGAATTTCTGGTCAGTCGCGTT
CCTTTCAATGGCCTACAAATCTTTGTACATCCTTATGGGGAACCTTTCGA
ATCTGCTATCGCCAAAAGGGTTGCTATTAGCCCTGGAACAATGCAATTTA
TCCATGTTGAATACCGAAAGtcGGAACTATTGGAAGACCCTTATCCATCA
AAGTGTTCTACAAAGGAGTACGATCTAGTCAAGAAATTTGTTCCTTACTC
ACAATCAATGTGTTCTATGGATTGTTTGATGAAAGAAATGCTCCAAGATT
GTGGTTGTATCCCTGCAGAATTCGCACATCATtatgATGGCGGAAGTAAA
CCATGTCGTTTTCGTCAAATTGAATGTATTGGACCCAAGCTTGCGAATGC
TGATAACTTGGTGCATAGATGCAGGCGTGATTGTCCAAAAGAATGTACCA
GCATCCAGTATGGAATATCTGTTGGCCAGACCAACAtggggaattcaaaa
atcattaGTAAACTTTCTAAAAAGTATAATTGGACCCACGATGAAGCTCG
TCACTTTATGAGAGAGAATATCTTTGGTATCGATGTTTCATACACAGATG
TTGTTTATATGATGGAATCATTATCTCCTGCTCAAAATTGGATATCGCTT
CTCAATGCTATTGGAGGTGGTTTGGGTCTTTGCATGGGTTGCAGTCTCAT
TACTTTCATTGAGTTCCTGGTGTTTGGCATCCAGTCTATATATTTGTATG
TCACCAGTAAATGTAAGGGCAATTGTCAATCTCAAGTTGAGAATGATAAT
TCGGAAAAAGACATGAAAAATAAACTATGAAAAGTAATTATCATTTCAAT
GTTCAAGATGAAAGGTTAGATGATTATTTTTAAACGATAAATATGTAATT
TGAAAATACTGATAAAACCTCAACGCTATTGAAAAGGTAAATAGCTAAGG
GATAAAATGTGTATGTGAGGGTGAAAGTGTTAGAATAATC Run BLAST on NCBI protein sequence of TCONS_00054207-protein >TCONS_00054207-protein ID=TCONS_00054207-protein|Name=TCONS_00054207-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
RSCMFDGEPCDPGDFLEVVSAHYGLCYQYNSIYLDKEPFKVSRGGEGAGL
RLYMAIPEDEFLVSRVPFNGLQIFVHPYGEPFESAIAKRVAISPGTMQFI
HVEYRKSELLEDPYPSKCSTKEYDLVKKFVPYSQSMCSMDCLMKEMLQDC
GCIPAEFAHHYDGGSKPCRFRQIECIGPKLANADNLVHRCRRDCPKECTS
IQYGISVGQTNMGNSKIISKLSKKYNWTHDEARHFMRENIFGIDVSYTDV
VYMMESLSPAQNWISLLNAIGGGLGLCMGCSLITFIEFLVFGIQSIYLYV
TSKCKGNCQSQVENDNSEKDMKNKL Run BLAST on NCBI transcript from alignment at scaffold_242:448781..457418+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054207 ID=TCONS_00054207|Name=TCONS_00054207|organism=Clytia hemisphaerica|type=transcript|length=8638bp|location=Sequence derived from alignment at scaffold_242:448781..457418+ (Clytia hemisphaerica)
GTAGAAGTTGCATGTTTGACGGCGAGCCTTGTGACCCTGGTGATTTCTTA
GAAGTGGTATCTGCACATTACGGTCTTTGTTATCAATACAACTCAATCTA
TCTTGACAAAGAACCGTTTAAAGTATCCAGAGGTGGAGAAGGTATTATAG
GTTCAAAGAGGCCCCCCATCGGTAAGTCCGATCATGATATCACGCAactt
tttgtcttcaatcatgATCGTGAAAATTTAgataatcacgcatccctttg
aatCACGACTCAAAAAAATCGAATCAAAATTCCAAATCTAGCAATCACGC
TAGAAAAAAGTACCTATCAtgtcatcacgaaaaccgcttgggggACTCAC
CAAAATCTGGTCACGATGAATGTGTACTCTTCTTTTCCGTGGAAACCATT
CTCAAGGAAATGAGTTTAACATGGTTTCCATACGAAAGCAAAAGAGATTG
GATTCCTTCTTTTGAAGAGATCCTAAAAAGTTTTGGTTTACTGCTAAAGA
GAAATATCGCAAATTCAGTCTGATTTACTTGAGAAATTAGTAGAAAGTCG
TTTACtatattttgacgtttttatccagatttaaagtctattcaagAAAA
GTGTGCTCTCTTTTTCTTGGGAAActcttcacaaaaattttttttgattc
ctATGAGAGATTGGTTTCCAAATGAAAGTCATACTGAACCATTGAGTTTA
GCAGTAGAaacttttggatgggaaatgaagctactTAATTTCTCATACAA
AAAGCccacgcgtggtttttacacaaacgctggattgaaagtaaaatctc
tcgctaaattccaaaaaatgcagtcctcaaaaacaaggGAACCCCTAGAT
ACattccgtcgtcatgattgcggcgttttctaggcgcgttctaggcgcgt
tctagatgggaaataaatggcttcactttttcttgcctgggaaaggtaga
gattctactctaacccttcgggctttaaactcaacgTAGGAACAGACTTT
CACTAGATCGAGTTTAAGTATTTTCATCAAgatcttgaaaatatttttga
atgggcgtttttaatctttttaatttcAGAGATTCAGCTGAAACTAAAAT
GTCACCAAAGAAATCAAAACGATTTAGGCCAAACTTTGTTTTCCCAAACT
TGTCGAAGCTAAATTTTTCACGTTCATTGTTAGTTGCTTTTTGATATCTA
AACCAACAAATGTTTACCATTTTTTATTCAGGTGCTGGACTTCGTTTGTA
CATGGCTATTCCAGAGGATGAATTTCTGGTCAGTCGCGTTCCTTTCAATG
GCCTACAAATCTTTGTACATCCTTATGGGGAACCTTTCGAATCTGCTATC
GCCAAAAGGGTTGCTATTAGCCCTGGAACAATGCAATTTATCCATGTTGA
ATACCGAAAGGTaaactttgaaaagtttgaaagtttgaaaaatctctacG
ATTAACCTATGAACTTTATGTTTTAATATTATCTTTTTGGTTTATATTCA
GTAATATATCCTACGCTCTAGTCAAACTTCTTAACAATACATATGTTCAA
AGGTTCTTGGTATAGCCTGGTATAaggtattttcattttctttagtcGGA
ACTATTGGAAGACCCTTATCCATCAAAGTGTTCTACAAAGGAGTACGATC
TAGTCAAGAAATTTGTTCCTTACTCACAATCAATGTGTTCTATGGATTGT
TTGATGAAAGAAATGCTCCAAGATTGTGGTTGTATCCCTGCAGAATTCGC
ACATCATtatggtaaaaaattattttcaaccaTCACAATATGCTAGTTCC
ATTAAAAACCATaccttttcaaatcaaaaaaaagttattgaaatGTGTCG
atacccctggaaaatggcgaaatttgctaaaatacccttggaaaaaatct
tttcatacTTAAAAAGAGGATGGACGAACTGAAATCAATCTTTTACCCTG
TGGACATTTTGGAATACATTTTActcccttggaaaaatgaaaaaggccCC
CCCAGGAAATTTTTTCTCGGAttattaccctctggaaatgttcgtccacA
CCATGAACATATAAACGACTGGACATccatctcctttgtctttttgtaga
aagggctgctagcttcgttgccgcctcgttaaaagcataaaatgaaacaa
tagattttgatgatataccacttaggaataccttgctaacaacgtcaaaa
ctttgacaaaagtctctgttgttctactcttctcaagtcttttatctata
tcataaaaaagataacagaggcaaaatcatcgtcagcttgtcaaaactcc
gactaatttATCTAATTTTTGACttaaagtgtctaataattttagagagt
gtcacattctaatttcgatattcttattacacaggctctcaactttggca
agctatttttttcaagtcataaaaaaaattattggagtgacaaaagggat
tcaaaagtatacacgcagttgaaattctgcatttcaaagttgaaaatatt
gataaaatatattacaaacttgtaaaaaaattcgaaaataatttctttgt
acattaagagtaatgttcaagctctatcaatccttttacctaaataattc
gaagaaataaaattatgacggaatattgtcggatttttcataccaatttt
gaaatacaggcggcaacgaagctcgcttcaaagagacaacaaaagataga
tgtccagttgtttatatgttcatgtccacacctagtctagcaagctagac
gactaattcagacatagtagaaataaagcaaaaagtaatagagggaccaa
ttttagtttatacaaactaaatcccgtaacaataatcgtattatcatata
actcctatactactgtattataCGCATTATAAACTACTCCAGTCTAGTCC
ACACCCCCCTGTATCGATATAAAATGGAATCGCCCAATATgctagttttt
tttttaggtcTTTTAGACAGTTTATAAAAAAGTCATTGTTGGACTTAAGG
ATTTTTATCTATAATTGATTTACTTACTCTTTAGGGTAACTCATAGAGTA
ATTTTAGCGAATTAGTGAATTTAAACTCTTGACTTTATGAAATCATCATC
CAAATCTTTACTCTATCGATTTTTATAGATGGCGGAAGTAAACCATGTCG
TTTTCGTCAAATTGAATGTATTGGACCCAAGCTTGGTATGTATATAATGA
ActcatttgaaaacaaaacttttgaTTTCATTGTTAGATAAATCTCCTTT
TTGTGAAGAATAGTAAACTATGGCTGTGAAAATACTGATTTAAAGGCTCT
TTTTGTGAAGAAGTAAGCATTTtgataggctacgtcatatttttcttcgt
ttcgagcgtaaaactcctactcttcgggatatgcgcactgctcttgtttt
gaatgttGAATTTCTCCGGATatatcgcatgcgcactgaggttttaatga
aacaatagagagtttcgagaCCTAAGCCAATCATAACTGTGTTTTAAACA
CTCTTTTATTTCAAATCTCTATTGAatgattgataaacttcttttgttaa
aaacttctattatgtttaaacctattgaTAGGcgaattcccggtgggggt
cactagtggccgcccatagcagtgcctatagaccaagagtaaggcctaaa
agcctaaTTTGCGAAGTTTTGGTGTTTTCGTTTCAGCGAATGCTGATAAC
TTGGTGCATAGATGCAGGCGTGATTGTCCAAAAGAATGTACCAGCATCCA
GTATGGAATATCTGTTGGCCAGACCAACAtggggaattcaaaaatcatta
GTAAACTTTCTAAAAAGTATAATTGGACCCACGATGAAGCTCGTCACTTT
ATGAGGTACATCTCAGTAGCGTAGGCAAGGggcacaaaatttgtgtagga
gagcagatttttatgccacagtaatatcttttttatattataaatagata
attgcagtgtcataaaaatctgctctcctacacaaattttgcgccccttc
TGCCCACGCTGCTGCATCTTCAAACTATGACGACTCACACATAATCTACG
GCGCGAGTTTGTTTACAACCAATGGGGACTAATGTTTTTGTTTCTGTAAT
TTCTAATCGATTCTATGTCGTAATCTCTATNGGGACTAATGTTTTTGTTT
CTGTAATTTCTAATCGATTCTATGTCGTGATTTACAGCAATCTCTATAGC
TATATAGAGGCTATAGCGAATGGCAATGTAATTTAGCTCCTTTTTaccta
aaatcgtaaaaaaaattataggctgaatttcaaaaataaaaaaagagtta
atttttgcgagaaactaatttttgggaattttgtcaaaattgaatCAATg
acgatagaccttttcataaattacgtcacgaacatcacttgcctcgtatt
caaacaattatcatatggtgattatgtctcttgagacattaacattaaat
gatttttttatgaataggaagtagtttaaATGAAATCCGCTTGGAATTAA
TCACCAtgggtgtttttccactgacAGATTAGAGAAGGATAATCCGAAGT
CGTTAACTCGACAACAAAAGAATCAATTAAATAAATCCCGATTATGTTGG
AAACacaggtcgtgttcagacctgaaagtttaagtttaaggcttAAGTAA
TACtaagttgatatgggaattaagaaatgcaacgacttaattgctatttc
atcttttagatagatTACATAAGAGAGGAAAAAGGAATCCCCTTCGTTTT
TAATGCGGAGTATGGGTCCATCGATCCatgatattctcattaaaagccca
ttaactgcctaaattgctagagacgctccgagcgtctctaagtcataaat
ttcacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCATTATCGTGTTGCATgct
tcttttcatttctttttacgAACTATAGAATTAACCTTTTCACAGTTTAA
CAACTATTTCATTAAGTATATTAGCTTGATTTTgtcagtggaaaaacacc
cCATGGCAatcatttcaaaacgaggctaatgatgttcgtaacgtaattta
tgaaaagcggtttattcaacataaaaatatattttcccaCTTGGTATAAG
GTTTTGATGTACTTTCTGTGGTATTTTATTACGCATAGAGGATTTTTTAC
ATTTCTGTTTTAGAGAGAATATCTTTGGTATCGATGTTTCATACACAGAT
GTTGTTTATATGATGGAATCATTATCTCCTGCTCAAAATTGGATATCGCT
TCTCAGTAAGATTGTAATTCTGGCTGAAACTTCCGTTTTATAATTTATGA
TGACGGCTATTGGAGGAGTTGACAAGGTTATCAAGGTCTCTGATGAGAAT
CCAACAGATTTGCAATACCctatcagttacatcaatatgccttcttacct
gtctttaaaaatataaataaaagtaatcacggaaaaggacgcgaaaaaaa
aagacataagtgtgagaacagagtNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNaagacataagtgtgagaacagagtaatcaaact
cgttagaaaaagtaccattagaagtcataaaaaatcaacctgaataaatg
caatcgaaattccagagaccttcataattccccaaacaacattacattac
tatgtcaaactccTATCACATAAATTTTACAATTACGTCAAAGTAGACTA
CGCTCGCCACCGAAGAGGTTTATTTggaaagggtaattatattttattgt
tcgcttcttttttaaagatttgccaagttggaaaagtatgaatttctttg
tacatattttacctaccccaaatatttgggacgctgagttttaaacgNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacgataaatg
tatcaaggtctgttttatttaccccctggtgacttaacaaaagagactta
actcgatgttacaatccaattattgaaagtttgtatcggcctttttataa
tgagcgagacatacgttctctgattacgcaattttcatatcaacatttcc
gaggcattttgatgtaactgcctattctcaaataaaaacattgcctatcc
atttttattttttaaaccttCCAAAAACATACTCCCTGTTTCAACATAAT
GCTCGGACTTgatttctcatttttaattggtaagtaagtaagtctgcgac
cgcagtcggaggcgacacgaaggctcctctttcgatagctatctacccaa
aggtaggggagggtgccactctttctccctggatttcttcacttaccctt
gatccttttctTAATTGTTGAGCAACAAGCAGAGAGATCAAGTAcaattt
tgagaatctttggtatgaccagGTTGGGGGtggaacccacaaccttgcaa
aCCGTAGCGGGATGCACTACCACTGCACTACAgccagatttaaaaaaaag
gtgGGGGTTATAATCAAGGTcacaatatttgagaaaaaagggaaattccc
gaggaagttttgaaaccacaatcgatttgtaagtgctctaaagtaggttg
gaagggtagagttttaactctgaattTTAACGCCAGCCTTAAAACTTAGG
ATCTGaggttcaaaaatagtccaataaggctcagaatgtAACCTGGAAGT
CTGCcgacccctcccaaattgaaatattcaattaCATTAAAGAgatcaaa
atcgactttctcgctggaactttaaatcttgaaaaacgttaaaataaccg
gaattctcaatatatttcaacaatgATTGTAGGTTGATAAGTGATTTAAG
GTGGGGGGTGAccttttttcaggtgggggttggaggggtgctGCCCACTA
TGGACGTGAACTAAACATAGACACCGTTTTGATGTATTTTCTTTCCTTAT
AGATGCTATTGGAGGTGGTTTGGGTCTTTGCATGGGTTGCAGTCTCATTA
CTTTCATTGAGTTCCTGGTGTTTGGCATCCAGTCTATATATTTGTATGTC
ACCAGTAAATGTAAGGGCAATTGTCAATCTCAAGTTGAGAATGATAATTC
GGAAAAAGACATGAAAAATAAACTATGAAAAGTAATTATCATTTCAATGT
TCAAGATGAAAGGTTAGATGATTATTTTTAAACGATAAATATGTAATTTG
AAAATACTGATAAAACCTCAACGCTATTGAAAAGGTAAATAGCTAAGGGA
TAAAATGTGTATGTGAGGGTGAAAGTGTTAGAATAATC Coding sequence (CDS) from alignment at scaffold_242:448781..457418+ >TCONS_00054207 ID=TCONS_00054207|Name=TCONS_00054207|organism=Clytia hemisphaerica|type=CDS|length=6846bp|location=Sequence derived from alignment at scaffold_242:448781..457418+ (Clytia hemisphaerica)
AGAAGTTGCATGTTTGACGGCGAGCCTTGTGACCCTGGTGATTTCTTAGA
AGTGGTATCTGCACATTACGGTCTTTGTTATCAATACAACTCAATCTATC
TTGACAAAGAACCGTTTAAAGTATCCAGAGGTGGAGAAGGTGCTGGACTT
CGTTTGTACATGGCTATTCCAGAGGATGAATTTCTGGTCAGTCGCGTTCC
TTTCAATGGCCTACAAATCTTTGTACATCCTTATGGGGAACCTTTCGAAT
CTGCTATCGCCAAAAGGGTTGCTATTAGCCCTGGAACAATGCAATTTATC
CATGTTGAATACCGAAAGtcGGAACTATTGGAAGACCCTTATCCATCAAA
GTGTTCTACAAAGGAGTACGATCTAGTCAAGAAATTTGTTCCTTACTCAC
AATCAATGTGTTCTATGGATTGTTTGATGAAAGAAATGCTCCAAGATTGT
GGTTGTATCCCTGCAGAATTCGCACATCATtatgATGGCGGAAGTAAACC
ATGTCGTTTTCGTCAAATTGAATGTATTGGACCCAAGCTTGCGAATGCTG
ATAACTTGGTGCATAGATGCAGGCGTGATTGTCCAAAAGAATGTACCAGC
ATCCAGTATGGAATATCTGTTGGCCAGACCAACAtggggaattcaaaaat
cattaGTAAACTTTCTAAAAAGTATAATTGGACCCACGATGAAGCTCGTC
ACTTTATGAGAGAGAATATCTTTGGTATCGATGTTTCATACACAGATGTT
GTTTATATGATGGAATCATTATCTCCTGCTCAAAATTGGATATCGCTTCT
CAATGCTATTGGAGGTGGTTTGGGTCTTTGCATGGGTTGCAGTCTCATTA
CTTTCATTGAGTTCCTGGTGTTTGGCATCCAGTCTATATATTTGTATGTC
ACCAGTAAATGTAAGGGCAATTGTCAATCTCAAGTTGAGAATGATAATTC
GGAAAAAGACATGAAAAATAAACTATGAAGAAGTTGCATGTTTGACGGCG
AGCCTTGTGACCCTGGTGATTTCTTAGAAGTGGTATCTGCACATTACGGT
CTTTGTTATCAATACAACTCAATCTATCTTGACAAAGAACCGTTTAAAGT
ATCCAGAGGTGGAGAAGGTGCTGGACTTCGTTTGTACATGGCTATTCCAG
AGGATGAATTTCTGGTCAGTCGCGTTCCTTTCAATGGCCTACAAATCTTT
GTACATCCTTATGGGGAACCTTTCGAATCTGCTATCGCCAAAAGGGTTGC
TATTAGCCCTGGAACAATGCAATTTATCCATGTTGAATACCGAAAGtcGG
AACTATTGGAAGACCCTTATCCATCAAAGTGTTCTACAAAGGAGTACGAT
CTAGTCAAGAAATTTGTTCCTTACTCACAATCAATGTGTTCTATGGATTG
TTTGATGAAAGAAATGCTCCAAGATTGTGGTTGTATCCCTGCAGAATTCG
CACATCATtatgATGGCGGAAGTAAACCATGTCGTTTTCGTCAAATTGAA
TGTATTGGACCCAAGCTTGCGAATGCTGATAACTTGGTGCATAGATGCAG
GCGTGATTGTCCAAAAGAATGTACCAGCATCCAGTATGGAATATCTGTTG
GCCAGACCAACAtggggaattcaaaaatcattaGTAAACTTTCTAAAAAG
TATAATTGGACCCACGATGAAGCTCGTCACTTTATGAGAGAGAATATCTT
TGGTATCGATGTTTCATACACAGATGTTGTTTATATGATGGAATCATTAT
CTCCTGCTCAAAATTGGATATCGCTTCTCAATGCTATTGGAGGTGGTTTG
GGTCTTTGCATGGGTTGCAGTCTCATTACTTTCATTGAGTTCCTGGTGTT
TGGCATCCAGTCTATATATTTGTATGTCACCAGTAAATGTAAGGGCAATT
GTCAATCTCAAGTTGAGAATGATAATTCGGAAAAAGACATGAAAAATAAA
CTATGAAGAAGTTGCATGTTTGACGGCGAGCCTTGTGACCCTGGTGATTT
CTTAGAAGTGGTATCTGCACATTACGGTCTTTGTTATCAATACAACTCAA
TCTATCTTGACAAAGAACCGTTTAAAGTATCCAGAGGTGGAGAAGGTGCT
GGACTTCGTTTGTACATGGCTATTCCAGAGGATGAATTTCTGGTCAGTCG
CGTTCCTTTCAATGGCCTACAAATCTTTGTACATCCTTATGGGGAACCTT
TCGAATCTGCTATCGCCAAAAGGGTTGCTATTAGCCCTGGAACAATGCAA
TTTATCCATGTTGAATACCGAAAGtcGGAACTATTGGAAGACCCTTATCC
ATCAAAGTGTTCTACAAAGGAGTACGATCTAGTCAAGAAATTTGTTCCTT
ACTCACAATCAATGTGTTCTATGGATTGTTTGATGAAAGAAATGCTCCAA
GATTGTGGTTGTATCCCTGCAGAATTCGCACATCATtatgATGGCGGAAG
TAAACCATGTCGTTTTCGTCAAATTGAATGTATTGGACCCAAGCTTGCGA
ATGCTGATAACTTGGTGCATAGATGCAGGCGTGATTGTCCAAAAGAATGT
ACCAGCATCCAGTATGGAATATCTGTTGGCCAGACCAACAtggggaattc
aaaaatcattaGTAAACTTTCTAAAAAGTATAATTGGACCCACGATGAAG
CTCGTCACTTTATGAGAGAGAATATCTTTGGTATCGATGTTTCATACACA
GATGTTGTTTATATGATGGAATCATTATCTCCTGCTCAAAATTGGATATC
GCTTCTCAATGCTATTGGAGGTGGTTTGGGTCTTTGCATGGGTTGCAGTC
TCATTACTTTCATTGAGTTCCTGGTGTTTGGCATCCAGTCTATATATTTG
TATGTCACCAGTAAATGTAAGGGCAATTGTCAATCTCAAGTTGAGAATGA
TAATTCGGAAAAAGACATGAAAAATAAACTATGAAGAAGTTGCATGTTTG
ACGGCGAGCCTTGTGACCCTGGTGATTTCTTAGAAGTGGTATCTGCACAT
TACGGTCTTTGTTATCAATACAACTCAATCTATCTTGACAAAGAACCGTT
TAAAGTATCCAGAGGTGGAGAAGGTGCTGGACTTCGTTTGTACATGGCTA
TTCCAGAGGATGAATTTCTGGTCAGTCGCGTTCCTTTCAATGGCCTACAA
ATCTTTGTACATCCTTATGGGGAACCTTTCGAATCTGCTATCGCCAAAAG
GGTTGCTATTAGCCCTGGAACAATGCAATTTATCCATGTTGAATACCGAA
AGtcGGAACTATTGGAAGACCCTTATCCATCAAAGTGTTCTACAAAGGAG
TACGATCTAGTCAAGAAATTTGTTCCTTACTCACAATCAATGTGTTCTAT
GGATTGTTTGATGAAAGAAATGCTCCAAGATTGTGGTTGTATCCCTGCAG
AATTCGCACATCATtatgATGGCGGAAGTAAACCATGTCGTTTTCGTCAA
ATTGAATGTATTGGACCCAAGCTTGCGAATGCTGATAACTTGGTGCATAG
ATGCAGGCGTGATTGTCCAAAAGAATGTACCAGCATCCAGTATGGAATAT
CTGTTGGCCAGACCAACAtggggaattcaaaaatcattaGTAAACTTTCT
AAAAAGTATAATTGGACCCACGATGAAGCTCGTCACTTTATGAGAGAGAA
TATCTTTGGTATCGATGTTTCATACACAGATGTTGTTTATATGATGGAAT
CATTATCTCCTGCTCAAAATTGGATATCGCTTCTCAATGCTATTGGAGGT
GGTTTGGGTCTTTGCATGGGTTGCAGTCTCATTACTTTCATTGAGTTCCT
GGTGTTTGGCATCCAGTCTATATATTTGTATGTCACCAGTAAATGTAAGG
GCAATTGTCAATCTCAAGTTGAGAATGATAATTCGGAAAAAGACATGAAA
AATAAACTATGAAGAAGTTGCATGTTTGACGGCGAGCCTTGTGACCCTGG
TGATTTCTTAGAAGTGGTATCTGCACATTACGGTCTTTGTTATCAATACA
ACTCAATCTATCTTGACAAAGAACCGTTTAAAGTATCCAGAGGTGGAGAA
GGTGCTGGACTTCGTTTGTACATGGCTATTCCAGAGGATGAATTTCTGGT
CAGTCGCGTTCCTTTCAATGGCCTACAAATCTTTGTACATCCTTATGGGG
AACCTTTCGAATCTGCTATCGCCAAAAGGGTTGCTATTAGCCCTGGAACA
ATGCAATTTATCCATGTTGAATACCGAAAGtcGGAACTATTGGAAGACCC
TTATCCATCAAAGTGTTCTACAAAGGAGTACGATCTAGTCAAGAAATTTG
TTCCTTACTCACAATCAATGTGTTCTATGGATTGTTTGATGAAAGAAATG
CTCCAAGATTGTGGTTGTATCCCTGCAGAATTCGCACATCATtatgATGG
CGGAAGTAAACCATGTCGTTTTCGTCAAATTGAATGTATTGGACCCAAGC
TTGCGAATGCTGATAACTTGGTGCATAGATGCAGGCGTGATTGTCCAAAA
GAATGTACCAGCATCCAGTATGGAATATCTGTTGGCCAGACCAACAtggg
gaattcaaaaatcattaGTAAACTTTCTAAAAAGTATAATTGGACCCACG
ATGAAGCTCGTCACTTTATGAGAGAGAATATCTTTGGTATCGATGTTTCA
TACACAGATGTTGTTTATATGATGGAATCATTATCTCCTGCTCAAAATTG
GATATCGCTTCTCAATGCTATTGGAGGTGGTTTGGGTCTTTGCATGGGTT
GCAGTCTCATTACTTTCATTGAGTTCCTGGTGTTTGGCATCCAGTCTATA
TATTTGTATGTCACCAGTAAATGTAAGGGCAATTGTCAATCTCAAGTTGA
GAATGATAATTCGGAAAAAGACATGAAAAATAAACTATGAAGAAGTTGCA
TGTTTGACGGCGAGCCTTGTGACCCTGGTGATTTCTTAGAAGTGGTATCT
GCACATTACGGTCTTTGTTATCAATACAACTCAATCTATCTTGACAAAGA
ACCGTTTAAAGTATCCAGAGGTGGAGAAGGTGCTGGACTTCGTTTGTACA
TGGCTATTCCAGAGGATGAATTTCTGGTCAGTCGCGTTCCTTTCAATGGC
CTACAAATCTTTGTACATCCTTATGGGGAACCTTTCGAATCTGCTATCGC
CAAAAGGGTTGCTATTAGCCCTGGAACAATGCAATTTATCCATGTTGAAT
ACCGAAAGtcGGAACTATTGGAAGACCCTTATCCATCAAAGTGTTCTACA
AAGGAGTACGATCTAGTCAAGAAATTTGTTCCTTACTCACAATCAATGTG
TTCTATGGATTGTTTGATGAAAGAAATGCTCCAAGATTGTGGTTGTATCC
CTGCAGAATTCGCACATCATtatgATGGCGGAAGTAAACCATGTCGTTTT
CGTCAAATTGAATGTATTGGACCCAAGCTTGCGAATGCTGATAACTTGGT
GCATAGATGCAGGCGTGATTGTCCAAAAGAATGTACCAGCATCCAGTATG
GAATATCTGTTGGCCAGACCAACAtggggaattcaaaaatcattaGTAAA
CTTTCTAAAAAGTATAATTGGACCCACGATGAAGCTCGTCACTTTATGAG
AGAGAATATCTTTGGTATCGATGTTTCATACACAGATGTTGTTTATATGA
TGGAATCATTATCTCCTGCTCAAAATTGGATATCGCTTCTCAATGCTATT
GGAGGTGGTTTGGGTCTTTGCATGGGTTGCAGTCTCATTACTTTCATTGA
GTTCCTGGTGTTTGGCATCCAGTCTATATATTTGTATGTCACCAGTAAAT
GTAAGGGCAATTGTCAATCTCAAGTTGAGAATGATAATTCGGAAAAAGAC
ATGAAAAATAAACTATGAAGAAGTTGCATGTTTGACGGCGAGCCTTGTGA
CCCTGGTGATTTCTTAGAAGTGGTATCTGCACATTACGGTCTTTGTTATC
AATACAACTCAATCTATCTTGACAAAGAACCGTTTAAAGTATCCAGAGGT
GGAGAAGGTGCTGGACTTCGTTTGTACATGGCTATTCCAGAGGATGAATT
TCTGGTCAGTCGCGTTCCTTTCAATGGCCTACAAATCTTTGTACATCCTT
ATGGGGAACCTTTCGAATCTGCTATCGCCAAAAGGGTTGCTATTAGCCCT
GGAACAATGCAATTTATCCATGTTGAATACCGAAAGtcGGAACTATTGGA
AGACCCTTATCCATCAAAGTGTTCTACAAAGGAGTACGATCTAGTCAAGA
AATTTGTTCCTTACTCACAATCAATGTGTTCTATGGATTGTTTGATGAAA
GAAATGCTCCAAGATTGTGGTTGTATCCCTGCAGAATTCGCACATCATta
tgATGGCGGAAGTAAACCATGTCGTTTTCGTCAAATTGAATGTATTGGAC
CCAAGCTTGCGAATGCTGATAACTTGGTGCATAGATGCAGGCGTGATTGT
CCAAAAGAATGTACCAGCATCCAGTATGGAATATCTGTTGGCCAGACCAA
CAtggggaattcaaaaatcattaGTAAACTTTCTAAAAAGTATAATTGGA
CCCACGATGAAGCTCGTCACTTTATGAGAGAGAATATCTTTGGTATCGAT
GTTTCATACACAGATGTTGTTTATATGATGGAATCATTATCTCCTGCTCA
AAATTGGATATCGCTTCTCAATGCTATTGGAGGTGGTTTGGGTCTTTGCA
TGGGTTGCAGTCTCATTACTTTCATTGAGTTCCTGGTGTTTGGCATCCAG
TCTATATATTTGTATGTCACCAGTAAATGTAAGGGCAATTGTCAATCTCA
AGTTGAGAATGATAATTCGGAAAAAGACATGAAAAATAAACTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054207-exon-scaffold_242-1491911889:448781..448921 | TCONS_00054207-exon-scaffold_242-1491911889:448781..448921 | Clytia hemisphaerica | exon |
| TCONS_00054207-exon-scaffold_242-1510915933:448781..448921 | TCONS_00054207-exon-scaffold_242-1510915933:448781..448921 | Clytia hemisphaerica | exon |
| TCONS_00054207-exon-scaffold_242-1575043694:448781..448921 | TCONS_00054207-exon-scaffold_242-1575043694:448781..448921 | Clytia hemisphaerica | exon |
| TCONS_00054207-exon-scaffold_242-1491911889:450012..450190 | TCONS_00054207-exon-scaffold_242-1491911889:450012..450190 | Clytia hemisphaerica | exon |
| TCONS_00054207-exon-scaffold_242-1510915933:450012..450190 | TCONS_00054207-exon-scaffold_242-1510915933:450012..450190 | Clytia hemisphaerica | exon |
| TCONS_00054207-exon-scaffold_242-1575043694:450012..450190 | TCONS_00054207-exon-scaffold_242-1575043694:450012..450190 | Clytia hemisphaerica | exon |
| TCONS_00054207-exon-scaffold_242-1491911889:450376..450541 | TCONS_00054207-exon-scaffold_242-1491911889:450376..450541 | Clytia hemisphaerica | exon |
| TCONS_00054207-exon-scaffold_242-1510915933:450376..450541 | TCONS_00054207-exon-scaffold_242-1510915933:450376..450541 | Clytia hemisphaerica | exon |
| TCONS_00054207-exon-scaffold_242-1575043694:450376..450541 | TCONS_00054207-exon-scaffold_242-1575043694:450376..450541 | Clytia hemisphaerica | exon |
| TCONS_00054207-exon-scaffold_242-1491911889:451909..451965 | TCONS_00054207-exon-scaffold_242-1491911889:451909..451965 | Clytia hemisphaerica | exon |
| TCONS_00054207-exon-scaffold_242-1510915933:451909..451965 | TCONS_00054207-exon-scaffold_242-1510915933:451909..451965 | Clytia hemisphaerica | exon |
| TCONS_00054207-exon-scaffold_242-1575043694:451909..451965 | TCONS_00054207-exon-scaffold_242-1575043694:451909..451965 | Clytia hemisphaerica | exon |
| TCONS_00054207-exon-scaffold_242-1491911889:452467..452635 | TCONS_00054207-exon-scaffold_242-1491911889:452467..452635 | Clytia hemisphaerica | exon |
| TCONS_00054207-exon-scaffold_242-1510915933:452467..452635 | TCONS_00054207-exon-scaffold_242-1510915933:452467..452635 | Clytia hemisphaerica | exon |
| TCONS_00054207-exon-scaffold_242-1575043694:452467..452635 | TCONS_00054207-exon-scaffold_242-1575043694:452467..452635 | Clytia hemisphaerica | exon |
| TCONS_00054207-exon-scaffold_242-1491911889:455244..455335 | TCONS_00054207-exon-scaffold_242-1491911889:455244..455335 | Clytia hemisphaerica | exon |
| TCONS_00054207-exon-scaffold_242-1510915933:455244..455335 | TCONS_00054207-exon-scaffold_242-1510915933:455244..455335 | Clytia hemisphaerica | exon |
| TCONS_00054207-exon-scaffold_242-1575043694:455244..455335 | TCONS_00054207-exon-scaffold_242-1575043694:455244..455335 | Clytia hemisphaerica | exon |
| TCONS_00054207-exon-scaffold_242-1491911889:457083..457418 | TCONS_00054207-exon-scaffold_242-1491911889:457083..457418 | Clytia hemisphaerica | exon |
| TCONS_00054207-exon-scaffold_242-1510915933:457083..457418 | TCONS_00054207-exon-scaffold_242-1510915933:457083..457418 | Clytia hemisphaerica | exon |
| TCONS_00054207-exon-scaffold_242-1575043694:457083..457418 | TCONS_00054207-exon-scaffold_242-1575043694:457083..457418 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:448781..457418 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
BLAST of TCONS_00054207 vs. Swiss-Prot (Human)
Match: ASIC1 (Acid-sensing ion channel 1 OS=Homo sapiens GN=ASIC1 PE=1 SV=3) HSP 1 Score: 93.5893 bits (231), Expect = 1.064e-20 Identity = 92/335 (27.46%), Postives = 153/335 (45.67%), Query Frame = 3
Query: 6 SCMFDGEPCDPGDFLEVVSAHYGLCYQYNSIYLDKEPFKVSRGGEGAGLRLYMAIPEDEFL-----VSRVPFN-GLQIFVHPYGE-PFESAIAKRVAISPGTMQFIHVEYRKSELLEDPYPS-KCSTKEYDLVKKFVPYSQSMCSMDCLMKEMLQDCGCIPAEFAHHYDGGSKPCRFRQI-ECIGPKLANADNLVHRCRRDCPKE--CTSIQYGISVGQTNMGNSKIISKLSKKYNWTHDEARHFMRENIFGIDVSYTDVVYMMESLSPAQNWISLLNAIXXXXXXXXXXSLITFIEFLVFGIQSIYLYVTSKCKGNCQSQVENDNSEKDMKNKL 977
SC F GE C DF +VV YG CY +NS + K +GG G GL + + I +DE+L F G+++ +H E PF + ++PG F+ + ++ L P+ + K T + DL F YS + C +DC + ++++C C H G + C Q EC P L D LV + + C E C +YG + + + L+KK+N ++ ++ ENI +D+ + + Y A LL IGG +GL +G S++T +E + + I + +G CQ + + +++K + L
Sbjct: 171 SCHFRGEVCSAEDF-KVVFTRYGKCYTFNSGRDGRPRLKTMKGGTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQIHSQDEPPFIDQLG--FGVAPGFQTFVACQEQRLIYLPPPWGTCKAVTMDSDL-DFFDSYSITACRIDCETRYLVENCNCRMV----HMPGDAPYCTPEQYKECADPAL---DFLVEKDQEYCVCEMPCNLTRYGKELSMVKIPSKASAKYLAKKFN----KSEQYIGENILVLDIFFEVLNYETIEQKKAYEIAGLLGDIGGQMGLFIGASILTVLELFDYAYEVIKHKLCR--RGKCQKEAKRSSADKGVALSL 488
The following BLAST results are available for this feature:
|
