TCONS_00054206 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054206
Unique NameTCONS_00054206
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length618

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054206 ID=TCONS_00054206|Name=TCONS_00054206|organism=Clytia hemisphaerica|type=transcript|length=618bp
AAGGACTTCAAAAAGACGGAGTAATGAATACTGAAGAAAGTATAACTTGA
TTATCACTCTGCTGATGGTAATTCAAGACCTTTGAGAGATATCAACTATT
CAAGATCCACCGAAGACCAATCGATCGCTTGTGAAGACAATGGAACAAAA
ATGTAACAGAAAGTGCAAATCAAGTATCAAAGCGAAATGGAAAGAATTAT
ACACCACCTGTTCTTTCGATGGTTTTCATTACATTTTTGAAGAACGTGGT
TTTTTACGATTCTTTTGGGTCACAGTCATCCTGTCGGCAGTTTTTCTAGC
TATCCTGTTATTCTACAATGTGATGGAACAGTTTTTCCAACACGAAGTTA
CGACAAATCTATTAAGACAATCATCTGAAGAGGATTTGCATTTCCCAACA
ATCACTATATGCAACTTGAACTCTGTATGGAAGGAAAAAGTTGAGCAGAA
TAATTATAACCTATCGACGGATGAGATTGTGAAGTTTTATCAAGATATGA
GAAATGGTCTTTTTAATCCAGATAATCTGAAAGTTTTGATGACATTTGAA
GCCAATGGAGTACACGAATTTGGAGATATTGTAAAGTTGTTTGAATTAAA
TATGACCGATATGGCTCG
Run BLAST on NCBI

protein sequence of TCONS_00054206-protein

>TCONS_00054206-protein ID=TCONS_00054206-protein|Name=TCONS_00054206-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MEQKCNRKCKSSIKAKWKELYTTCSFDGFHYIFEERGFLRFFWVTVILSA
VFLAILLFYNVMEQFFQHEVTTNLLRQSSEEDLHFPTITICNLNSVWKEK
VEQNNYNLSTDEIVKFYQDMRNGLFNPDNLKVLMTFEANGVHEFGDIVKL
FELNMTDMA
Run BLAST on NCBI

transcript from alignment at scaffold_242:445302..448255+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054206 ID=TCONS_00054206|Name=TCONS_00054206|organism=Clytia hemisphaerica|type=transcript|length=2954bp|location=Sequence derived from alignment at scaffold_242:445302..448255+ (Clytia hemisphaerica)
AAGGACTTCAAAAAGACGGAGTAATGAATACTGAAGAAAGTATAACTTGA
TTATCACTCTGCTGATGGTAATTCAAGACCTTTGAGAGATATCAACTATT
CAAGGTAGGTACAAATTTCTCCTAGGTgtaaattaaaacattttgagGGA
TACATAACtagtaaaatttttcaaattcgtaGTGTTTGATTATTTTCCTT
TCTTAAAAGTTGGCTGGGaatagtttttgctggctttttTACAGACCCTT
ATCTTATTTCAGTATTCAAATTCAGGCATTTGTTGGAGACTACTAAGGTA
ATTTGATCCATTATGATAACTTAGAACTTGTTTAAACAAACGTCATTCAA
ATTGTCTCCATTATGCAATGGCTAGTGAATTCGGAAGGAAGCCCCTTAAA
AGTCGGTATTTTATGCTTCCTCGATTTCACTTTAAAGGTCGagacactac
acgtttttttataagaataaactatataagagcataaggcttcgatggcc
aaaatattaagaacaagttaagaacattttaaggctttggggactctaaa
acgcccaatttcttaggaaaatgaataacaatactcaaaaaattgtgcaa
ataagaacatgttaagaatatttttaggcctAAGACTAAaagagttaaga
acatcctcaggctttaaaaatgttggatgtttttataaaaaaatgcgtAT
TTAGCACCTCCCTCCCCCCTGGGTTCAGAATATATAATGCTTTCTTTCTC
TGGAActataaaatttcttttttttttaattgaatattCTTACAGGATAA
CGCAGACAGTTACAAATAACtgatattattatatacctgtaggcaaaaac
agccattgaataattcatgatataccatggctattataccacggtagaat
ttttttcaaattttgctttcaaagtttgatttttttgtcgctcttgttgt
tatcaaagaaattcattaaaacaAATCTATTGTCAACAGTTGTCAATTTC
AAGAACAGattttatgactcaaagtaattaagaaaatcatttaaaaagaa
aacattcgaacgttcgattatgggagtgttttaagtGAAACGTTTGACTA
TTGACATAATTAATATGATTTGTTTTTGCCTCTAGGTATATAATAAAACA
TATATTCAATAGGTTTtcgttggttattggatttatcaaccctcggtgat
gtatattcaactcggcttcgcctcgttgaatattacatcaccccgggtta
ataaatctcaataaccaacttttacccattgaatatctgcttattactAT
ATTGGTCCTGACTTAAAAATAAACTAATAAATTTATAATAATGAATTATT
TTAGTGTCCCTTCAAAATAATTGGCTGCTTGATATTATGAAATGAAGATA
GCAAAGACTGAACTATAAAATATCGTTTGCAAATACTTTGTTACCAACGT
TATACGAAAATCTAAGGTAGATTAAGAGAGATCGCTAAGATTAGAATTTA
AATTCTTTATTCCTCGGGAAAACGGAAAACCGAAACAGaaaaaatacagt
tgactctctctaattcgatcttcaagagaataaaaatttcattcgaatta
aagaaagatttgaataacgAGAGTAATTAaaaccactttccagctgaAGG
GACCAtcattttagttcgaattacagaaaaatcgaattagagagagttga
ctgtagcAAAATCTAACCTCTCCTCTTTCCTTTTTTTCAGATCCACCGAA
GACCAATCGATCGCTTGTGAAGACAATGGAACAAAAATGTAACAGAAAGT
GCAAATCAAGTATCAAAGCGAAATGGAAAGAATTATACACCACCTGTTCT
TTCGATGGTTTTCATTACATTTTTGAAGAACGTGGTTTTTTACGATTCTT
TTGGGTCACAGTCATCCTGTCGGCAGTTTTTCTAGCTATCCTGTTATTCT
ACAATGTGATGGAACAGTTTTTCCAACACGAAGTTACGACAAATCTATTA
AGGTAAGCTATTGAAAGATATAATTGGAATAGAAAAGATAGTCAGCCCCA
GCCTTGCCATTGAAATTTCAGGCCCCCTAAACATATCAGGTCCCCCAAAT
ATTTGGCTGCATTTTAGCTCCCACTTTtcgtttgcatttttttgggtGTA
ACCCAAAAATTCAGGGGGTTGACACTATATAGTATATGTATTTTGTTCGG
GAAACCGTAAGTTTAACTGGAGTTTTAGTAGTTAAGCCCATTCTGAGCTC
TACATTTTATAGAACTGGTTTTCAGTGGTCCTGGACTTTTTTGGGACTAT
CCAATGCAATGGATCATGCCCATCAGGCCAGGGGGGGTCATCGTACTCCA
AGTTAAAGATTCGAATTGACAttaggctcttccagaaaatatccgtacat
gggggtggataTAGTGTTCGGGGGGAGTGGTCGcgaaaaatctacaaatt
tagcttgtccaggggtaaacttgctctgtttgagggtaattttgaatgtc
cgggggaTCGAAAGTCTACCCCAATGTCTTGGGAgtaaattaccaaaaaa
aatccTCCATCCcctatattcaaattttttctggtaaATCCCATTCGCAG
ATTATCCACGGGTAAAAATGTCTAGCACCATTACTTTTTCATTATAGAGT
ACGGGTTTGAggtgaattttcactaaaatcaatttaaaaattCTCATCAT
AGACAATCATCTGAAGAGGATTTGCATTTCCCAACAATCACTATATGCAA
CTTGAACTCTGTATGGAAGGAAAAAGTTGAGCAGAATAATTATAACCTAT
CGACGGATGAGATTGTGAAGTTTTATCAAGATATGAGAAATGGTCTTTTT
AATCCAGATAATCTGAAAGTTTTGATGACATTTGAAGCCAATGGAGTACA
CGAATTTGGAGATATTGTAAAGTTGTTTGAATTAAATATGACCGATATGG
CTCG

Coding sequence (CDS) from alignment at scaffold_242:445302..448255+

>TCONS_00054206 ID=TCONS_00054206|Name=TCONS_00054206|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_242:445302..448255+ (Clytia hemisphaerica)
ATGGAACAAAAATGTAACAGAAAGTGCAAATCAAGTATCAAAGCGAAATG
GAAAGAATTATACACCACCTGTTCTTTCGATGGTTTTCATTACATTTTTG
AAGAACGTGGTTTTTTACGATTCTTTTGGGTCACAGTCATCCTGTCGGCA
GTTTTTCTAGCTATCCTGTTATTCTACAATGTGATGGAACAGTTTTTCCA
ACACGAAGTTACGACAAATCTATTAAGACAATCATCTGAAGAGGATTTGC
ATTTCCCAACAATCACTATATGCAACTTGAACTCTGTATGGAAGGAAAAA
GTTGAGCAGAATAATTATAACCTATCGACGGATGAGATTGTGAAGTTTTA
TCAAGATATGAGAAATGGTCTTTTTAATCCAGATAATCTGAAAGTTTTGA
TGACATTTGAAGCCAATGGAGTACACGAATTTGGAGATATTGTAAAGTTG
TTTGAATTAAATATGACCGATATGGCTATGGAACAAAAATGTAACAGAAA
GTGCAAATCAAGTATCAAAGCGAAATGGAAAGAATTATACACCACCTGTT
CTTTCGATGGTTTTCATTACATTTTTGAAGAACGTGGTTTTTTACGATTC
TTTTGGGTCACAGTCATCCTGTCGGCAGTTTTTCTAGCTATCCTGTTATT
CTACAATGTGATGGAACAGTTTTTCCAACACGAAGTTACGACAAATCTAT
TAAGACAATCATCTGAAGAGGATTTGCATTTCCCAACAATCACTATATGC
AACTTGAACTCTGTATGGAAGGAAAAAGTTGAGCAGAATAATTATAACCT
ATCGACGGATGAGATTGTGAAGTTTTATCAAGATATGAGAAATGGTCTTT
TTAATCCAGATAATCTGAAAGTTTTGATGACATTTGAAGCCAATGGAGTA
CACGAATTTGGAGATATTGTAAAGTTGTTTGAATTAAATATGACCGATAT
GGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034191XLOC_034191Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054206-proteinTCONS_00054206-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054206-exon-scaffold_242-1491911889:445302..445405TCONS_00054206-exon-scaffold_242-1491911889:445302..445405Clytia hemisphaericaexon
TCONS_00054206-exon-scaffold_242-1510915933:445302..445405TCONS_00054206-exon-scaffold_242-1510915933:445302..445405Clytia hemisphaericaexon
TCONS_00054206-exon-scaffold_242-1575043694:445302..445405TCONS_00054206-exon-scaffold_242-1575043694:445302..445405Clytia hemisphaericaexon
TCONS_00054206-exon-scaffold_242-1491911889:447042..447303TCONS_00054206-exon-scaffold_242-1491911889:447042..447303Clytia hemisphaericaexon
TCONS_00054206-exon-scaffold_242-1510915933:447042..447303TCONS_00054206-exon-scaffold_242-1510915933:447042..447303Clytia hemisphaericaexon
TCONS_00054206-exon-scaffold_242-1575043694:447042..447303TCONS_00054206-exon-scaffold_242-1575043694:447042..447303Clytia hemisphaericaexon
TCONS_00054206-exon-scaffold_242-1491911889:448004..448255TCONS_00054206-exon-scaffold_242-1491911889:448004..448255Clytia hemisphaericaexon
TCONS_00054206-exon-scaffold_242-1510915933:448004..448255TCONS_00054206-exon-scaffold_242-1510915933:448004..448255Clytia hemisphaericaexon
TCONS_00054206-exon-scaffold_242-1575043694:448004..448255TCONS_00054206-exon-scaffold_242-1575043694:448004..448255Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:445302..448255 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.173485	0	0.0982145	0	0.584887	0.739496	0.334564	0.104405	0.219289	0.0905416	0	0	0.346139	0.119823	0	0.211434	0	0.0667432	0.184419	0.482452	0.0838677	0.245446	0.198915	0.542527	0.931317	1.32989	0.237883	0.126937	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001873ENaC
Vocabulary: Biological Process
TermDefinition
GO:0006814sodium ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005272sodium channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006814 sodium ion transport
cellular_component GO:0016020 membrane
molecular_function GO:0005272 sodium channel activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054206 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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