TCONS_00054201 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054201
Unique NameTCONS_00054201
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length837

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054201 ID=TCONS_00054201|Name=TCONS_00054201|organism=Clytia hemisphaerica|type=transcript|length=837bp
atgcAAACCAAGGCATAAATCAAAATTGTGCTCTTTCAACTGATTCTTTG
CATGTATAGAGACATACCATAGACACTAAATCTATACTATTCTTCACTTC
TTTTACTTTAGATATCATGATTCTCTTGTtggaatgaaaatgaaattttg
atttaaataaaacCAATCATTGTTTTGTACATACACTGCTTAGTTAGAGG
ATGAGGATACACACAAGTCGGGTTTTGATATTCTTATTATTTGTGATATG
GATTGGAGGaatgttatattttttcacGAGTAGTTCTAATGCTCCACCGC
CGCTATCACCAGAAGAGCAAGCAAGGCTCATTGCGCTAGGAAAACTTGCC
AGGGATCGTGACCACAAAGGACACAAAGAACACCATGATATTGGACATGG
TCAGGATCATCAAAAGCCTGATGAGAAAAAATACAATGTAAagggaaata
tttttattgctaAAGACCCTAAAATGAGAAGTAACAATAGAGATAGTAGA
TCTTTGAAGGATTTTGATTGGCATGGCTATGTTCAACGAGGAGCTCTGAA
ACCTGGTGAAGATAAGAATGTTAGAAATGCTTATAATCAGGAAGCAAGTG
AAAAATTAGCATGGGATCGACCCATCCCAGATGTCAGAGATGCaaaGTGT
CGAAATAAGCGTTACGATACAGATCTTCCGACAACTACTATCATCATTTG
CTTTCACAATGAGGGAAGAGCAGCTTTATTACGAACAGTTGTTAGTGCTT
TAAACAGATCTCCTGATCACCTACTGAAGGAAATTATTTTGGTGGATGAC
TTCAGTGATAAtcCTGCTGATGGCAAGGAACTCGGAA
Run BLAST on NCBI

transcript from alignment at scaffold_242:352983..354651+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054201 ID=TCONS_00054201|Name=TCONS_00054201|organism=Clytia hemisphaerica|type=transcript|length=1669bp|location=Sequence derived from alignment at scaffold_242:352983..354651+ (Clytia hemisphaerica)
atgcAAACCAAGGCATAAATCAAAATTGTGCTCTTTCAACTGATTCTTTG
CATGTATAGAGACATACCATAGACACTAAATCTATACTATTCTTCACTTC
TTTTACTTTAGATATCATGATTCTCTTGTtggaatgaaaatgaaattttg
atttaaataaaacCAATCATTGTTTTGTACATACACTGCTTAGTTAGAGG
ATGAGGATACACACAAGTCGGGTTTTGATATTCTTATTATTTGTGATATG
GATTGGAGGaatgttatattttttcacGAGTAGTTCTAATGCTCCACCGC
CGCTATCACCAGAAGAGCAAGCAAGGCTCATTGCGCTAGGAAAACTTGCC
AGGGATCGTGACCACAAAGGACACAAAGAACACCATGATATTGGACATGG
TCAGGATCATCAAAAGCCTGATGAGAAAAAATACAATGTAAagggaaata
tttttattgctaAAGACCCTAAAATGAGAAGTAACAATAGAGATAGTAGA
TCTTTGAAGGATTTTGATTGGCATGGCTATGTTCAACGAGGAGCTCTGAA
ACCTGGTGAAGATAAGAATGTTAGAAATGCTTATAATCAGGAAGCAAGTG
AAAAATTAGCATGGGATCGACCCATCCCAGATGTCAGAGATGCaaagtaa
gaaaaaatcaaagttttaaaaaaatcctcAGATTTTCTCAATTCAAATAC
TGATAGGTTATTGCATTGTTTATGATAAGAAACTAGATTAAGATTGGGAT
GAATATACACTTTTTCCACCTTATGTCAGCTTCAATTTGCTGGTTACTGT
AATCATATTGCTGGCTACATCAAACAAATAACCAACAAAAAGAAGGCCGG
CTTTTGCTGGCAAATATTTCATGTCCTTTGAATCGCTTGTATGGTCACAT
ATATAATTATCTGTTAGGTGTCGAAATAAGCGTTACGATACAGATCTTCC
GACAACTACTATCATCATTTGCTTTCACAATGAGGGAAGAGCAGCTTTAT
TACGAACAGTTGTTAGGTGAGTCAGTTATATGTACCAATTCCTTTACACT
TCTCTTCAACATTATTcctctttttaaatattttcaagtttcttTTTGAA
GACACATTTTCTTAGATAATGTCTAAGCCATTCTAATTCACGTCGACATT
CAGCTATTGCCGATGTAAATGTCAACGTAAATTTGGCTTTTGCCAACGTA
AAAGTGCTTACTGAATTAGAAAGGCTGCTTCTATCTGGTTTGCATAGGTC
TTGAAATTATCCTGGCTCAGCTCACATATGAACAATGACATCTTTTTATA
TGGTTAACCAATAATTAATTCCATAGATTTTTTGTTGATAtgcctttttg
ttttgttttccagTGCTTTAAACAGATCTCCTGATCACCTACTGAAGGAA
ATTATTTTGGTGGATGACTTCAGTGATAAtcgtatgaattttttttttcc
ttcaggCTCTTTTTGAGGTCTGTCCTGTTGTCCTGCATTTTATAAACTAG
TATTGTATAGATTGTGCTTACCTCAATTCAATCAATTACTAATATTAATT
TTCCATTTGCATTGTAATGCAAAAATCTGATATCACAGAAATTCCCCATT
TTATTATCGAtttgttaaaaacaaaagagttatgttttttttcagCTGCT
GATGGCAAGGAACTCGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034188XLOC_034188Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054201-exon-scaffold_242-1491911889:352983..353628TCONS_00054201-exon-scaffold_242-1491911889:352983..353628Clytia hemisphaericaexon
TCONS_00054201-exon-scaffold_242-1510915933:352983..353628TCONS_00054201-exon-scaffold_242-1510915933:352983..353628Clytia hemisphaericaexon
TCONS_00054201-exon-scaffold_242-1575043694:352983..353628TCONS_00054201-exon-scaffold_242-1575043694:352983..353628Clytia hemisphaericaexon
TCONS_00054201-exon-scaffold_242-1491911889:353900..353998TCONS_00054201-exon-scaffold_242-1491911889:353900..353998Clytia hemisphaericaexon
TCONS_00054201-exon-scaffold_242-1510915933:353900..353998TCONS_00054201-exon-scaffold_242-1510915933:353900..353998Clytia hemisphaericaexon
TCONS_00054201-exon-scaffold_242-1575043694:353900..353998TCONS_00054201-exon-scaffold_242-1575043694:353900..353998Clytia hemisphaericaexon
TCONS_00054201-exon-scaffold_242-1491911889:354346..354413TCONS_00054201-exon-scaffold_242-1491911889:354346..354413Clytia hemisphaericaexon
TCONS_00054201-exon-scaffold_242-1510915933:354346..354413TCONS_00054201-exon-scaffold_242-1510915933:354346..354413Clytia hemisphaericaexon
TCONS_00054201-exon-scaffold_242-1575043694:354346..354413TCONS_00054201-exon-scaffold_242-1575043694:354346..354413Clytia hemisphaericaexon
TCONS_00054201-exon-scaffold_242-1491911889:354628..354651TCONS_00054201-exon-scaffold_242-1491911889:354628..354651Clytia hemisphaericaexon
TCONS_00054201-exon-scaffold_242-1510915933:354628..354651TCONS_00054201-exon-scaffold_242-1510915933:354628..354651Clytia hemisphaericaexon
TCONS_00054201-exon-scaffold_242-1575043694:354628..354651TCONS_00054201-exon-scaffold_242-1575043694:354628..354651Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:352983..354651 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.2898	12.2015	18.7063	16.6214	35.2412	28.4063	42.7874	42.0823	20.8173	31.9673	23.6999	14.9023	16.6492	16.7472	16.8071	19.7465	27.9269	21.1621	8.82176	13.2265	12.3997	9.15691	14.2967	18.8205	16.8036	21.9907	14.6426	9.18478	27.4875	19.1358
Blast
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BLAST of TCONS_00054201 vs. Swiss-Prot (Human)
Match: GALT2 (Polypeptide N-acetylgalactosaminyltransferase 2 OS=Homo sapiens GN=GALNT2 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.732e-31
Identity = 58/109 (53.21%), Postives = 77/109 (70.64%), Query Frame = 3 
Query:  510 DFDWHGYVQRGALKPGEDKNVRNAYNQEASEKLAWDRPIPDVRDAKCRNKRYDTDLPTTTIIICFHNEGRAALLRTVVSALNRSPDHLLKEIILVDDFSDNPADGKELG 836
            DF+   YV    ++ G+D   RN +NQ  S+KL  DR IPD R  +C+ K++  DLP T+++I FHNE R+ALLRTVVS L +SP HL+KEIILVDD+S++P DG  LG
Sbjct:   80 DFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLG 188
The following BLAST results are available for this feature:
BLAST of TCONS_00054201 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GALT21.732e-3153.21Polypeptide N-acetylgalactosaminyltransferase 2 OS... [more]
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