TCONS_00054154 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054154
Unique NameTCONS_00054154
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1627

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054154 ID=TCONS_00054154|Name=TCONS_00054154|organism=Clytia hemisphaerica|type=transcript|length=1627bp
AAAATGTATGTAGCTAATCAGTATCCACAAAACAGAAATCAAGATTTGCC
AAGGTTTTGGAGTCAATGTTTCAAAGAGCCAAAATCCAGTATTGCCAAgA
CTTAATGATaagaagaacatttttgaaaatggctgaaaaacaaCTGCATC
GTTTCATTGATATTGGTGTCAATTTGACCGATCCAGTATTCAATGGTGTT
TATCATGGAAAAAAAGCTCATGAAGATGACTTCTCTATCATGATGCAAAG
AGCAAAAGATATTGgtatgaaaaaaatgatgataaCAGTTGGGCATCTTG
AAGAAGCACCTGCTGCACTTGATTTAGTAAAAACCGATGAGAGTTTATTT
TGTACCATTGGATGTCATCCAACCAGGTGTAATGCATTTGAGAAAGATAC
AACACCTGAGGAATATTACAGAAAACTTCTTGAAATAGCTACACAGAACA
AAGATAAAGTTGTTGCAATTGGAGAATGTGGTTTAGATTATGATAGGGAA
CATTTCTGTCCAAGAGAGActcaaaagaaatattttgaaaaacaatttga
tTTAGCTGCTGAAACTAAATTGCCAATGTTTCTTCACATGAGAAATGCAG
GTGATGATTTTGTGGATATTTATAAGCGAAATATGGATAAAGTTAATGGT
GGTGTTGCTCACTGTTTCACTGGAACTGCTGAAGAAGCAAAAACACTTCT
TGATCTTGGTTTGTACATAGGAATAACAGGTTGTTCCNACAACACCTGAG
GAATATTACGGAAAACTTCTTGAAATAGCTACACAGAACAAAGATAAAGT
TGTTGCAATTGGAGAATGTGGTTTAGATTATGATAGGGAACATTTTTGTC
CAAGAGAGActcaaaagaaatattttgaaaaacaatttgatTTAGCTGCT
GAAACTAAATTGCCAATGTTTCTTCACATGAGAAATGCAGGTGATGATTT
TGTGGATATTTATAAGCGAAATATGGATAAAGTTAATGGTGGTGTTGCTC
ACTGTTTCACTGGAACTGCTGAAGAAGCAAAAACACTTCTTGATCTTGGT
TTGTACATTGGAATAACAGGTTGTTCCCTGAAAACGgaagaaaatcttga
aattttgaaaacaattccGTCAGAAAGATTAATGGTTGAAACAGACGCTC
CTTGGTGCGAAGTCAAAAATACACATGCTGGCTCAAAGTATGTGAAAACT
AAATTCCAaaccaaaaagaaagaaaaatgggacGCTGGTTGTTGTGTTAA
ATCTCGCAATGAGCCCTGTCATATTATACAAGTTCTTGAAATTATGGCAG
CTGTCAGAGGTGAAGACCCTAAAGAACTTGCAGAAATTATGtttgaaaat
actgaaaaattgttttttaaatgaGAATTTGAATAGAATTTTTACGAAAA
tagattttttgattattttttagaataatgATTGGTACCAAAACTAAAAC
TAGCACATCAtaagtttaaattttgatacaccttttcaaccgtagccaCC
AATCGCCGCGTGAGCATTTATTTGTCCATTTTACCACTCTAAAACCGCCC
CATtcttttttttcgcacctatagacaatagaaaaaggtgtcaaaaaagg
attggatcgagtttaggggaaaAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00054154-protein

>TCONS_00054154-protein ID=TCONS_00054154-protein|Name=TCONS_00054154-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
MFQRAKIQYCQDLMIRRTFLKMAEKQLHRFIDIGVNLTDPVFNGVYHGKK
AHEDDFSIMMQRAKDIGMKKMMITVGHLEEAPAALDLVKTDESLFCTIGC
HPTRCNAFEKDTTPEEYYRKLLEIATQNKDKVVAIGECGLDYDREHFCPR
ETQKKYFEKQFDLAAETKLPMFLHMRNAGDDFVDIYKRNMDKVNGGVAHC
FTGTAEEAKTLLDLGLYIGITGCSXNT
Run BLAST on NCBI

transcript from alignment at scaffold_242:24289..26098+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054154 ID=TCONS_00054154|Name=TCONS_00054154|organism=Clytia hemisphaerica|type=transcript|length=1810bp|location=Sequence derived from alignment at scaffold_242:24289..26098+ (Clytia hemisphaerica)
AAAATGTATGTAGCTAATCAGTATCCACAAAACAGAAATCAAGATTTGCC
AAGGTTTTGGAGTCAATGTTTCAAAGAGCCAAAATCCAGTATTGCCAAgg
ttgcatatgttttgcatatttttccaCTAAATCCAACCACCACACTTTTT
CCTGTAATTTTGTATATAATCTAAGATAGCGGATGAAAAGCCTATTACAG
TGTATAACACAACACACAGTTGCAATTCATGCCATTTAATACttgtaaaa
gttttaaaactaGTGCTTAACCTTTGTTTTAGACTTAATGATaagaagaa
catttttgaaaatggctgaaaaacaaCTGCATCGTTTCATTGATATTGGT
GTCAATTTGACCGATCCAGTATTCAATGGTGTTTATCATGGAAAAAAAGC
TCATGAAGATGACTTCTCTATCATGATGCAAAGAGCAAAAGATATTGgta
tgaaaaaaatgatgataaCAGTTGGGCATCTTGAAGAAGCACCTGCTGCA
CTTGATTTAGTAAAAACCGATGAGAGTTTATTTTGTACCATTGGATGTCA
TCCAACCAGGTGTAATGCATTTGAGAAAGATACAACACCTGAGGAATATT
ACAGAAAACTTCTTGAAATAGCTACACAGAACAAAGATAAAGTTGTTGCA
ATTGGAGAATGTGGTTTAGATTATGATAGGGAACATTTCTGTCCAAGAGA
GActcaaaagaaatattttgaaaaacaatttgatTTAGCTGCTGAAACTA
AATTGCCAATGTTTCTTCACATGAGAAATGCAGGTGATGATTTTGTGGAT
ATTTATAAGCGAAATATGGATAAAGTTAATGGTGGTGTTGCTCACTGTTT
CACTGGAACTGCTGAAGAAGCAAAAACACTTCTTGATCTTGGTTTGTACA
TAGGAATAACAGGTTGTTCCNACAACACCTGAGGAATATTACGGAAAACT
TCTTGAAATAGCTACACAGAACAAAGATAAAGTTGTTGCAATTGGAGAAT
GTGGTTTAGATTATGATAGGGAACATTTTTGTCCAAGAGAGActcaaaag
aaatattttgaaaaacaatttgatTTAGCTGCTGAAACTAAATTGCCAAT
GTTTCTTCACATGAGAAATGCAGGTGATGATTTTGTGGATATTTATAAGC
GAAATATGGATAAAGTTAATGGTGGTGTTGCTCACTGTTTCACTGGAACT
GCTGAAGAAGCAAAAACACTTCTTGATCTTGGTTTGTACATTGGAATAAC
AGGTTGTTCCCTGAAAACGgaagaaaatcttgaaattttgaaaacaattc
cGTCAGAAAGATTAATGGTTGAAACAGACGCTCCTTGGTGCGAAGTCAAA
AATACACATGCTGGCTCAAAGTATGTGAAAACTAAATTCCAaaccaaaaa
gaaagaaaaatgggacGCTGGTTGTTGTGTTAAATCTCGCAATGAGCCCT
GTCATATTATACAAGTTCTTGAAATTATGGCAGCTGTCAGAGGTGAAGAC
CCTAAAGAACTTGCAGAAATTATGtttgaaaatactgaaaaattgttttt
taaatgaGAATTTGAATAGAATTTTTACGAAAAtagattttttgattatt
ttttagaataatgATTGGTACCAAAACTAAAACTAGCACATCAtaagttt
aaattttgatacaccttttcaaccgtagccaCCAATCGCCGCGTGAGCAT
TTATTTGTCCATTTTACCACTCTAAAACCGCCCCATtcttttttttcgca
cctatagacaatagaaaaaggtgtcaaaaaaggattggatcgagtttagg
ggaaaAAAAG

Coding sequence (CDS) from alignment at scaffold_242:24289..26098+

>TCONS_00054154 ID=TCONS_00054154|Name=TCONS_00054154|organism=Clytia hemisphaerica|type=CDS|length=1368bp|location=Sequence derived from alignment at scaffold_242:24289..26098+ (Clytia hemisphaerica)
ATGTTTCAAAGAGCCAAAATCCAGTATTGCCAAgACTTAATGATaagaag
aacatttttgaaaatggctgaaaaacaaCTGCATCGTTTCATTGATATTG
GTGTCAATTTGACCGATCCAGTATTCAATGGTGTTTATCATGGAAAAAAA
GCTCATGAAGATGACTTCTCTATCATGATGCAAAGAGCAAAAGATATTGg
tatgaaaaaaatgatgataaCAGTTGGGCATCTTGAAGAAGCACCTGCTG
CACTTGATTTAGTAAAAACCGATGAGAGTTTATTTTGTACCATTGGATGT
CATCCAACCAGGTGTAATGCATTTGAGAAAGATACAACACCTGAGGAATA
TTACAGAAAACTTCTTGAAATAGCTACACAGAACAAAGATAAAGTTGTTG
CAATTGGAGAATGTGGTTTAGATTATGATAGGGAACATTTCTGTCCAAGA
GAGActcaaaagaaatattttgaaaaacaatttgatTTAGCTGCTGAAAC
TAAATTGCCAATGTTTCTTCACATGAGAAATGCAGGTGATGATTTTGTGG
ATATTTATAAGCGAAATATGGATAAAGTTAATGGTGGTGTTGCTCACTGT
TTCACTGGAACTGCTGAAGAAGCAAAAACACTTCTTGATCTTGGTTTGTA
CATAGGAATAACAGGTTGTTCCNACAACACCTGAATGTTTCAAAGAGCCA
AAATCCAGTATTGCCAAgACTTAATGATaagaagaacatttttgaaaatg
gctgaaaaacaaCTGCATCGTTTCATTGATATTGGTGTCAATTTGACCGA
TCCAGTATTCAATGGTGTTTATCATGGAAAAAAAGCTCATGAAGATGACT
TCTCTATCATGATGCAAAGAGCAAAAGATATTGgtatgaaaaaaatgatg
ataaCAGTTGGGCATCTTGAAGAAGCACCTGCTGCACTTGATTTAGTAAA
AACCGATGAGAGTTTATTTTGTACCATTGGATGTCATCCAACCAGGTGTA
ATGCATTTGAGAAAGATACAACACCTGAGGAATATTACAGAAAACTTCTT
GAAATAGCTACACAGAACAAAGATAAAGTTGTTGCAATTGGAGAATGTGG
TTTAGATTATGATAGGGAACATTTCTGTCCAAGAGAGActcaaaagaaat
attttgaaaaacaatttgatTTAGCTGCTGAAACTAAATTGCCAATGTTT
CTTCACATGAGAAATGCAGGTGATGATTTTGTGGATATTTATAAGCGAAA
TATGGATAAAGTTAATGGTGGTGTTGCTCACTGTTTCACTGGAACTGCTG
AAGAAGCAAAAACACTTCTTGATCTTGGTTTGTACATAGGAATAACAGGT
TGTTCCNACAACACCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034171XLOC_034171Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054154-proteinTCONS_00054154-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054154-exon-scaffold_242-1491911889:24289..24387TCONS_00054154-exon-scaffold_242-1491911889:24289..24387Clytia hemisphaericaexon
TCONS_00054154-exon-scaffold_242-1510915933:24289..24387TCONS_00054154-exon-scaffold_242-1510915933:24289..24387Clytia hemisphaericaexon
TCONS_00054154-exon-scaffold_242-1575043694:24289..24387TCONS_00054154-exon-scaffold_242-1575043694:24289..24387Clytia hemisphaericaexon
TCONS_00054154-exon-scaffold_242-1491911889:24571..26098TCONS_00054154-exon-scaffold_242-1491911889:24571..26098Clytia hemisphaericaexon
TCONS_00054154-exon-scaffold_242-1510915933:24571..26098TCONS_00054154-exon-scaffold_242-1510915933:24571..26098Clytia hemisphaericaexon
TCONS_00054154-exon-scaffold_242-1575043694:24571..26098TCONS_00054154-exon-scaffold_242-1575043694:24571..26098Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:24289..26098 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.30003	7.08449	1.9625	1.52601	7.18042	5.34906	5.76739	4.95815	3.30466	3.6088	3.0699	1.59973	2.40529	1.78131	3.4788	3.73776	3.26967	3.98643	1.97692	1.18984	5.35257	3.78923	16.8356	13.4816	1.56578	2.57889	2.81923	4.11586	10.5145	14.2651
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001130TatD_family
IPR018228DNase_TatD-rel_CS
IPR032466Metal_Hydrolase
Vocabulary: Molecular Function
TermDefinition
GO:0016788hydrolase activity, acting on ester bonds
GO:0016888endodeoxyribonuclease activity, producing 5'-phosphomonoesters
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
Blast
[Close]
BLAST of TCONS_00054154 vs. Swiss-Prot (Human)
Match: TATD1 (Putative deoxyribonuclease TATDN1 OS=Homo sapiens GN=TATDN1 PE=1 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 1.475e-81
Identity = 126/201 (62.69%), Postives = 153/201 (76.12%), Query Frame = 1 
Query:  739 TTPEEYYGKLLEIATQNKDKVVAIGECGLDYDREHFCPRETQKKYFEKQFDLAAETKLPMFLHMRNAGDDFVDIYKRNMDKVNGGVAHCFTGTAEEAKTLLDLGLYIGITGCSLKTEENLEILKTIPSERLMVETDAPWCEVKNTHAGSXXXXXXXXXXXXXXWDAGCCVKSRNEPCHIIQVLEIMAAVRGEDPKELAEIM 1341
              P+ Y  +LL +A  NK KVVAIGECGLD+DR  FCP++TQ KYFEKQF+L+ +TKLPMFLH RN+  +F+DI KRN D+  GGV H F GT E A  L+DL LYIG  GCSLKTE NLE+LK+IPSE+LM+ETDAPWC VK+THAGS     +     K+KW++G C+K RNEPCHIIQ+LEIM+AVR EDP ELA  +
Sbjct:   87 NNPDLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDRCVGGVVHSFDGTKEAAAALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGS--KYIRTAFPTKKKWESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTL 285

HSP 2 Score: 243.047 bits (619), Expect = 4.592e-75
Identity = 114/199 (57.29%), Postives = 147/199 (73.87%), Query Frame = 3 
Query:  150 RFIDIGVNLTDPVFNGVYHGKKAHEDDFSIMMQRAKDIGMKKMMITVGHLEEAPAALDLVKTDESLFCTIGCHPTRCNAFEKDTTPEEYYRKLLEIATQNKDKVVAIGECGLDYDREHFCPRETQKKYFEKQFDLAAETKLPMFLHMRNAGDDFVDIYKRNMDKVNGGVAHCFTGTAEEAKTLLDLGLYIGITGCSXNT 746
            +FIDIG+NLTDP+F G+Y G + H+DD   ++ RA +IG+KK MIT G+L+++  AL L +T+   F T+GCHPTRC  FEK+  P+ Y ++LL +A  NK KVVAIGECGLD+DR  FCP++TQ KYFEKQF+L+ +TKLPMFLH RN+  +F+DI KRN D+  GGV H F GT E A  L+DL LYIG  GCS  T
Sbjct:    5 KFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALHLAQTNGMFFSTVGCHPTRCGEFEKNN-PDLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDRCVGGVVHSFDGTKEAAAALIDLDLYIGFNGCSLKT 202
The following BLAST results are available for this feature:
BLAST of TCONS_00054154 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TATD11.475e-8162.69Putative deoxyribonuclease TATDN1 OS=Homo sapiens ... [more]
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