TCONS_00054152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054152
Unique NameTCONS_00054152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length440

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054152 ID=TCONS_00054152|Name=TCONS_00054152|organism=Clytia hemisphaerica|type=transcript|length=440bp
ATCTCCATTGCATTGGTAAATCTGTTGAACCAAAAGTATATTGTTCCTGA
CACAGAATAGCAAACGAGGATTCGATCAGTTTCGTTTTACAACATTAGTT
GTTAGTTGATAAGGCTGAAAGTTAGAATTGTGCTGGAAGCACCTAAGTTC
AAAACCACAATGCTGTTCTTGAGGTGACCAAATAAAGATGTGAATCGGTT
TGCTGTATCCTGAACTTGTTAAACAAAAGGTTTGTTGATATCGTGGGTTA
TTTGGATCTTCATTGAATTTCTTAACAATATCATCCAGAACGTTTTGGAA
TTCAACTCCAATTACTACAGATGTAATACATTTTGCAATCGAGAAAATAA
ACAACAAGCTAATTGACAACAtcatttttctatgttttctatttctataa
aTAAATTTAAACATAGTTTAGTCAACAATATTTGCAATGT
Run BLAST on NCBI

transcript from alignment at scaffold_241:39250..39689

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054152 ID=TCONS_00054152|Name=TCONS_00054152|organism=Clytia hemisphaerica|type=transcript|length=440bp|location=Sequence derived from alignment at scaffold_241:39250..39689 (Clytia hemisphaerica)
ACATTGCAAATATTGTTGACTAAACTATGTTTAAATTTAtttatagaaat
agaaaacatagaaaaatgaTGTTGTCAATTAGCTTGTTGTTTATTTTCTC
GATTGCAAAATGTATTACATCTGTAGTAATTGGAGTTGAATTCCAAAACG
TTCTGGATGATATTGTTAAGAAATTCAATGAAGATCCAAATAACCCACGA
TATCAACAAACCTTTTGTTTAACAAGTTCAGGATACAGCAAACCGATTCA
CATCTTTATTTGGTCACCTCAAGAACAGCATTGTGGTTTTGAACTTAGGT
GCTTCCAGCACAATTCTAACTTTCAGCCTTATCAACTAACAACTAATGTT
GTAAAACGAAACTGATCGAATCCTCGTTTGCTATTCTGTGTCAGGAACAA
TATACTTTTGGTTCAACAGATTTACCAATGCAATGGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034169XLOC_034169Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054152-exon-scaffold_241-1491911889:39250..39689TCONS_00054152-exon-scaffold_241-1491911889:39250..39689Clytia hemisphaericaexon
TCONS_00054152-exon-scaffold_241-1510915933:39250..39689TCONS_00054152-exon-scaffold_241-1510915933:39250..39689Clytia hemisphaericaexon
TCONS_00054152-exon-scaffold_241-1575043694:39250..39689TCONS_00054152-exon-scaffold_241-1575043694:39250..39689Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_241supercontigscaffold_241:39250..39689 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.149768	0.173895	0	5.37485	3.65273	3.10498	2.58798	1.1648	0.480929	1.2448	0.306857	0.30643	0.318231	0.0872097	0.187179	0.230589	0	0	0.170842	0.148493	0	0.464086	0.160096	1.15427	1.12197	0	0	0.170465	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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