TCONS_00054125 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054125
Unique NameTCONS_00054125
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1176

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054125 ID=TCONS_00054125|Name=TCONS_00054125|organism=Clytia hemisphaerica|type=transcript|length=1176bp
CAGCGTCTCTCCAAACAAAGGTTCCTACGCCGGAGGTTCCATTTTAACTA
TCACTGGAGAAGGCTTTGGAACGGTGGACTCTGACGTAGAAGTGAGAGTG
GGCCAGAAAAAATGCGAAATTTTGACGATTTCGGATACCACGATTACCTG
CAGACAGCCACCTGTCACGCGGACAGTTCAAGTGGGTAATAGCGGACAGC
ACGAAACATTTGGTATTGGGTACAAGTGGAGTAAAGAGAACATCAACATT
CTGACTGGTGACACTGTGGAGTGGTCATGGGGTTATTCCCCAGAATCAGG
CGTGACATCAGGTATCTATCCTTCCGATCCCGATGACATACTCTCGTACG
ACGCTTCAAACTTCTACTGTCAACCATCACAATCGGGAACTTGTTCCAAA
AGGTTCGATTTTGAAGGTGATTATGGCTTCACTAGCGGAACACTTAAAGG
ATATGGTTTCAGTTTCGGTGGTAACATCGTGGTCATTGAACGAACTTCGA
ATGTAGTTGAAGATATCCTCGTCCTTGTTAAAGGGTATGAATCCACCAAT
ACCCTCCCATTCACGTACCGGGATGACCGTACACCTAAAATCACATCCAT
TGAACAAGATCAATCCACTGGATTAATGCATCGGTTACCAAGCCAACGGA
TCAAAATAAATGGTGTTGGATTCAGTAGCACGCGCTCGAAAAATAATGTC
AAGTTTGGTTCACATCTTTGTGACGTCAAATCTGCAAGTGCGACATCCTT
AGAATGTGATATGGATCTTACAAGCGAACCGCCGATGGATATTTTACTCC
CAGTTTCACTTTTGGTTGAGGGGAAAGGAGACGCTCTTGTGCAAATCCGT
TCCGATCTCAATTATTCTGTTGTCTTTCAACATGAGGTTTCCGGTATTTC
ACCACTACGAGGCTCTGAACAAGGGCGTACGAAACTAACAGTTGGTGGTC
ATGGTTTAAATGGACACCTTGTTGAAGTCATCATTGGTGTTTCTGTTTGT
GAAACTATCGAAAGTACGTACTCCCAACTGACGTGCTGGTCACCTGCTGA
TGCATCTGGCTCAGCAGATATCGAAGTCCAAGACAAAGGATATCAACTTG
ATGCGCAAAAGACTGAAACccctttcactttcgtttacgATTCTACTTTA
ACACCAATAGCGAAACAAGAAACTAT
Run BLAST on NCBI

transcript from alignment at scaffold_24:255053..259516-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054125 ID=TCONS_00054125|Name=TCONS_00054125|organism=Clytia hemisphaerica|type=transcript|length=4464bp|location=Sequence derived from alignment at scaffold_24:255053..259516- (Clytia hemisphaerica)
CAGCGTCTCTCCAAACAAAGGTTCCTACGCCGGAGGTTCCATTTTAACTA
TCACTGGAGAAGGCTTTGGAACGGTGGACTCTGACGTAGAAGTGAGAGTG
GGCCAGAAAAAATGCGAAATTTTGACGATTTCGGATACCACGATTACCTG
CAGACAGCCACCTGTCACGCGGACAGTTCAAGTGGGTAATAGCGGACAGC
ACGAAAGTAAGTATATTATTATATTTTTTAGGTTTTGAAAGCTTTTTTTA
CGTCTCCAGTGCAGTCAACTTTGAAGGGAGCTTCTAAGTAAAACATGGCT
CACTGATTAATTCATGTTATGCTCAGCAACATGTATAATTTTTTTCAAAA
AAACATATGATGTCGATATTACGACTATTATACTGACAAGTAAGCTAGGT
TTGGGACGATATCTTACAGGGATGAAGAGTGTAGTAGGATTGAGTGAGTT
GGGCTAGGTTGATAAGAAGAAATACCAATGGGTCGAGGTTGAAAACCCTG
TTGTTCAACACGCTCTAGCCAATATTTCCTCGTTTACCAAAGCAGCTCCT
TATTAATAAAAAGTCCGCTTGCCCTTCTATCATCTCCCACCCCTCTGCCA
TGATTAATTGACTTGTTTGCTAGTTTGAAACGTTCAAAAATATTTACTTT
GAATTTTCCCAATAGCATTTGGTATTGGGTACAAGTGGAGTAAAGAGAAC
ATCAACATTCTGACTGGTGACACTGTGGAGGTACGTTCTTTCTTGATGCT
GTCCGATGCTAGTGTAACTCCCAAATTATTGAGAAATAAAAGGGCCCTAG
AATACTGTATCGTGTTTCATACTGGCACAAGTTCCCGGCAATACAGAGTA
TTGTAGATTTCATTTCAACCATTGAGAAAGTAAGCTAAATCTGAGTGTTC
TTCGTGTTTTGAAGTTATAGTTCATAGTACTAAAACGCTTTAAGAAAGGT
GTTCGCTAATATGGTTTCACCAGAACCGCTGACATTTTCAAATAGTTGGC
TCGTTAGTTAGTCTGTTGTATGTGTAAGCTAATTTAATTTGTTCATTCTA
TATTTTATAGTGGTCATGGGGTTATTCCCCAGAATCAGGCGTGACATCAG
GTATCTATCCTTCCGATCCCGATGACATACTCTCGTACGACGCTTCAAAC
TTCTACTGTCAACCATCACAATCGGGAACTTGTTCCAAAAGGTTCGATTT
TGAAGGTGATTATGGCTTCACTAGCGGAACACTTAAAGGATATGGTTTCA
GTTTCGGTGGTAACATCGTGGTCATTGAACGAACTTCGAATGTAGTTGAA
GATATCCTCGTCCTTGTTAAAGGTTGCTAGTTAATTGAACTAAGTTATAT
ATCCTCGCAAGCTTCCCTACTTAACGGGGTTCTTAAAACTTTGAATAAAA
ATTTTATTTAATGGAAAATATTTTTATTAAAGGTGCGAAGTCGGTCTTCG
ACGTAGCTCATATGAGCCTGTACCACGTATTTTTTTATAAAATCTTATTG
CGTTATCTTCTCAGCAAAGAATAGTTTGGTACAAGCTAAGCTCATATTTG
ATTATTTGTTCTTCTAGGGTATGAATCCACCAATACCCTCCCATTCACGT
ACCGGGATGACCGTACACCTAAAATCACATCCATTGAACAAGATCAATCC
ACTGGATTAATGCATCGGTTACCAAGCCAACGGATCAAAATAAATGGTGT
TGGATTCAGTAGCACGCGCTCGAAAAATAATGTCAAGTTTGGTTCACATC
TTTGTGACGTCAAATCTGCAAGTGCGACATCCTTAGAATGTGATATGGAT
CTTACAAGCGAACCGCCGATGGATATTTTACTCCCAGTTTCACTTTTGGT
TGAGGGGAAAGGAGACGCTCTTGTGCGAATCCGTTCCGATCTCAATTATT
CTGTTGTCTTTCAACATGAGGTTTCCAGTGTAAGTTTATACCACACATTT
CACACTGCTTTTAAAATTTCTTGGTAAAAGTGTTCAGTTTTTAGATGTTC
CATTTTCAAAAGTTTCGAATCCCTTGACACATACACCATAGTAACAGCAA
CGATCAGACGACAAGTGAGATTGAATAGATCTTCAAGAATAGGTTACTGA
ACGGTTGAAATTGTATCTTTTTGCCTCATGTTATTCTGATATATAAAGGT
CGGTCTCCACTTTCGCGCAAAATGTTGCTCGTGTTGCTCGAAAGTGGAGA
CCGGCCTTAACACTTTAATCGTTTATCCCCCCCCTCATACAGATTTCACC
ACTACGAGGCTCTGAACAAGGGCGTACGAAACTAACAGTTANTTTGCAAT
ATAATGTACTGGTACTGTTAGTTTTACTATATACTATATTTTCAAGCGTA
TTGAACACTGTATCTACCAATACTGGAACTTCATTAATTTCAACCAGTGG
ATCTGTATCTTATAGTCAGTAAGTTGTTTTATTATCCATCGTGATATTTG
TCTCACTGAACATTGCGCTCTAGCCCGTAGAGACTCTTGGATACAGTGAA
ATAAATGGAGTCACAAAGTGCTCAAGAAAATTCAAGAAAATTCGAAAAAA
TTCGTGTGAATTATGAAGAAATAAAGATCTAACTTACGATTGCTATGTGG
TGTTTCAATATTCATGGTATTGGGTACAAGTGGAGTAAAGAGAACATCAA
CATTCTGACTGGTGACACTGTGGAGGTACGTTCTTTCTGGATGCTGTCTG
ATGCTAATGTAACTCCCAAATTATTGAGAAATAAAAGGGCCCTAGAATAC
TGTATGGTGTTTCATGCTGGTACAATTTCCAGGCAATACAGAGTATTGTA
GATTTCATTTCAATCATTTTGAAAGTAAGCTAAATGTGAGAGTGTTCTTC
ATGTTTTGAAGTTACAGCTCATATTACTAAAATGCTTTAAGAAAAGTGTT
CGCTAATATGGTTTCACCAGAACCGTTGACATTTTCAAATTTTCAAGTTT
TCAAATAGTTGGTTTAATTTATTTTGTTCATTCTATATTTTATAGTGGTC
ATGGGGTTATTCCCCAGAATCAGGCGTGACATCAGGTATCTACCCTTCCG
ATCCCGATGACATACTCTCGTATGACGCTTCAAACTTCTACTGTCAACCA
TCACAATCGGGAACTTGTTCCAAAAGGTTCGATTTTGATTATGGCTTCAC
TAGCGGAACACTTAAAGGATATGGTTTCAGTTTCGGTGGTAACATCGTGG
TCATTGAACGAACTTCGAATGTAGTTGAAGATATCCTCGTCCTTGTTAAA
GGTTGGTAGTTAATTGAACTAAGTTATATATCCTCGCAAGCTTCCCTACT
TAACGGGGTTCTTAAAACTTTGAATAAAAATTTTATTTAATGGAAAATAT
TTTTATTAAAGAGTGCGAAGTCGGTCTTCGACGTAGCTCATATGAGCCTG
TACCACGTATTTTTTTATAAAATCTTATTGCGTTATCTTCTCAACAAAGA
AGAGTTTGGTACAAGCTAAGCTCATATTTGATTATTTGTTCTTCTAGGGT
ATGAATCCACCAATACCCTCCCATTCACGTACCGGGATGACCGTACACCT
AAAATCACATCCATTGAACAAGATCAATCCACTGGATTAATGCATCGGTT
ACCAAGCCAACGGATCAAAATAAATGGTGTTGGATTCAGTAGCACGCGCT
CGAAAAATAATGTCAAGTTTGGTTCACATCTTTGTGACGTCAAATCTGCA
AGTGCGACATCCTTAGAATGTGATATGGATCTTACAAGCGAACCGCCGAT
GGATATTTTACTCCCAGTTTCACTTTTGGTTGAGGGGAAAGGAGACGCTC
TTGTGCAAATCCGTTCCGATCTCAATTATTCTGTTGTCTTTCAACATGAG
GTTTCCGGTGTAAGTTTACACCACACATTTCACACTGCTTTTAAAATTTC
TTGGTAAAAGTGTTCAGTTTTTAGATGTTCCATTTTCAAAAGTTCCGAAT
CCCTTGACACATCATAGCATACAGCAACGATCAGACGACAAGTAATTTTT
CTTTTCAGAGATTGAATAGATCTTCAAGAATAGGTTACTGAACGGTTGAA
ATTGTATGTTTTTGCCTCATGTTATTCTGATATATAAAGGTCGGTCTCCA
CTTTCGCGCAAAATGTTGCTCATGTTGCTCGAAAGTGGAGACCGGCCTTA
AGACTTTAATCGTTTATCCCCCCCCTCATACAGATTTCACCACTACGAGG
CTCTGAACAAGGGCGTACGAAACTAACAGTTGGTGGTCATGGTTTAAATG
GACACCTTGTTGAAGTCATCATTGGTGTTTCTGTTTGTGAAACTATCGAA
AGTACGTACTCCCAACTGACGTGCTGGTCACCTGCTGATGCATCTGGCTC
AGCAGATATCGAAGTCCAAGACAAAGGATATCAACTTGATGCGCAAAAGA
CTGAAACCCCTTTCACTTTCGTTTACGATTCTACTTTAACACCAATAGCG
AAACAAGAAACTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034148XLOC_034148Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054125-exon-scaffold_24-1575043694:259311..259516TCONS_00054125-exon-scaffold_24-1575043694:259311..259516Clytia hemisphaericaexon
TCONS_00054125-exon-scaffold_24-1575043694:258787..258851TCONS_00054125-exon-scaffold_24-1575043694:258787..258851Clytia hemisphaericaexon
TCONS_00054125-exon-scaffold_24-1575043694:258195..258456TCONS_00054125-exon-scaffold_24-1575043694:258195..258456Clytia hemisphaericaexon
TCONS_00054125-exon-scaffold_24-1575043694:257889..257949TCONS_00054125-exon-scaffold_24-1575043694:257889..257949Clytia hemisphaericaexon
TCONS_00054125-exon-scaffold_24-1575043694:255658..255958TCONS_00054125-exon-scaffold_24-1575043694:255658..255958Clytia hemisphaericaexon
TCONS_00054125-exon-scaffold_24-1575043694:255053..255333TCONS_00054125-exon-scaffold_24-1575043694:255053..255333Clytia hemisphaericaexon
TCONS_00054125-exon-scaffold_24-1510915933:259311..259516TCONS_00054125-exon-scaffold_24-1510915933:259311..259516Clytia hemisphaericaexon
TCONS_00054125-exon-scaffold_24-1510915933:258787..258851TCONS_00054125-exon-scaffold_24-1510915933:258787..258851Clytia hemisphaericaexon
TCONS_00054125-exon-scaffold_24-1510915933:258195..258456TCONS_00054125-exon-scaffold_24-1510915933:258195..258456Clytia hemisphaericaexon
TCONS_00054125-exon-scaffold_24-1510915933:257889..257949TCONS_00054125-exon-scaffold_24-1510915933:257889..257949Clytia hemisphaericaexon
TCONS_00054125-exon-scaffold_24-1510915933:255658..255958TCONS_00054125-exon-scaffold_24-1510915933:255658..255958Clytia hemisphaericaexon
TCONS_00054125-exon-scaffold_24-1510915933:255053..255333TCONS_00054125-exon-scaffold_24-1510915933:255053..255333Clytia hemisphaericaexon
TCONS_00054125-exon-scaffold_24-1491911889:259311..259516TCONS_00054125-exon-scaffold_24-1491911889:259311..259516Clytia hemisphaericaexon
TCONS_00054125-exon-scaffold_24-1491911889:258787..258851TCONS_00054125-exon-scaffold_24-1491911889:258787..258851Clytia hemisphaericaexon
TCONS_00054125-exon-scaffold_24-1491911889:258195..258456TCONS_00054125-exon-scaffold_24-1491911889:258195..258456Clytia hemisphaericaexon
TCONS_00054125-exon-scaffold_24-1491911889:257889..257949TCONS_00054125-exon-scaffold_24-1491911889:257889..257949Clytia hemisphaericaexon
TCONS_00054125-exon-scaffold_24-1491911889:255658..255958TCONS_00054125-exon-scaffold_24-1491911889:255658..255958Clytia hemisphaericaexon
TCONS_00054125-exon-scaffold_24-1491911889:255053..255333TCONS_00054125-exon-scaffold_24-1491911889:255053..255333Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:255053..259516 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00164985	0	0	0	0	0	0	0	0	0	0	0	0.617615	0.517777	0	0.0884349	0.281649	0.035621	0	0.823944	0	0	0	0	0.352815	0	0.0331852	0.0265641	0	0
Blast
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BLAST of TCONS_00054125 vs. Swiss-Prot (Human)
Match: PKHL1 (Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.010e-24
Identity = 101/386 (26.17%), Postives = 169/386 (43.78%), Query Frame = 2 
Query:    2 SVSPNKGSYAGGSILTITGEGFGTVDSDVEVRVGQKKCEILTISDTTITCRQPPVTRTVQVGNSGQHETFGIGYKWSKENINILTGDTVEWSWGYSP-ESGVTSGIYP-SDPDDILSYDASNFYC--QPSQSGTCSKRFDFEGDYGFTSGTL-KGYGFSFGGNIVVIERTSNVVEDILVL--------------------VKG--------------YESTNTLPFTYRDDRTPKITSIEQDQSTGLMHRLPSQRIKINGVGFSSTRSKNNVKFGSHLCDVKSASATSLECDMDLTSEPPMDILLPVSLLVEGKGDALVQIRSDLNYSVVFQHEVSGISPLRGSEQGRTKLTVGGHGL--NGHLVEVIIGVSVCETIESTYSQLTC 1036
            S+ P +GS  GG+ +TI G GF T+ ++  V +G   C + + S+  I C         ++ N+G+    G+GY WS   +N+  GDTV W W   P   G+   I+  S P  ++ YD   F    Q S SG+ S +F   G + ++SG + + +     G I V+   +  +   L +                    V G               +++  L F      +P I++I    STG ++ L    I I G GFS+    N V  GS+ C V+ +S  S+ C +D  +   + I   V+L V   G A+  + ++ +   V    +  + P  GS  G T +T+ G G   +   V+V++G   C+ +   Y+ + C
Sbjct: 1334 SMFPQRGSLFGGTEITIRGFGFSTIPAENTVLLGSIPCNVTSSSENVIKCILHSTGNIFRITNNGKDSVHGLGYAWSPPVLNVSVGDTVAWHWQTHPFLRGIGYRIFSVSSPGSVI-YDGKGFTSGRQKSTSGSFSYQFTSPGIHYYSSGYVDEAHSIFLQGVINVLPAETRHIPLHLFVGRSEATYAYGGPENLHLGSSVAGCLATEPLCSLNNTRVKNSKRLLFEVSSCFSPSISNIT--PSTGTVNEL----ITIIGHGFSNLPWANKVTIGSYPCVVEESSEDSITCHIDPQNSMDVGIRETVTLTVYNLGTAINTLSNEFDRRFVLLPNIDLVLPNAGSTTGMTSVTIKGSGFAVSSAGVKVLMGHFPCKVLSVNYTAIEC 1712
The following BLAST results are available for this feature:
BLAST of TCONS_00054125 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PKHL16.010e-2426.17Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2[more]
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