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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054124 ID=TCONS_00054124|Name=TCONS_00054124|organism=Clytia hemisphaerica|type=transcript|length=1067bp
ATTAATTTCAACCAGTGGATCTGTATCTTATAGTCAGTAAGTTGTTTTAT
TATCCATCGTGATATTTGTCTCACTGAACATTGCGCTCTAGCCCGTAGAG
ACTCTTGGATACAGTGAAATAAATGGAGTCACAAAGTGCTCaagaaaatt
caagaaaattcgaaaaaattcgtGTGAATTATGAAGAAATAAAGATCTAA
CTTACGATTGCTATGTGGTGTTTCAATATTCATGGTATTGGGTACAAGTG
GAGTAAAGAGAACATCAACATTCTGACTGGTGACACTGTGGAGTGGTCAT
GGGGTTATTCCCCAGAATCAGGCGTGACATCAGGTATCTACCCTTCCGAT
CCCGATGACATACTCTCGTATGACGCTTCAAACTTCTACTGTCAACCATC
ACAATCGGGAACTTGTTCCAAAAGGGTATGAATCCACCAATACCCTCCCA
TTCACGTACCGGGATGACCGTACACCTAAAATCACATCCATTGAACAAGA
TCAATCCACTGGATTAATGCATCGGTTACCAAGCCAACGGATCAAAATAA
ATGGTGTTGGATTCAGTAGCACGCGCTCGAAAAATAATGTCAAGTTTGGT
TCACATCTTTGTGACGTCAAATCTGCAAGTGCGACATCCTTAGAATGTGA
TATGGATCTTACAAGCGAACCGCCGATGGATATTTTACTCCCAGTTTCAC
TTTTGGTTGAGGGGAAAGGAGACGCTCTTGTGCAAATCCGTTCCGATCTC
AATTATTCTGTTGTCTTTCAACATGAGGTTTCCGGTATTTCACCACTACG
AGGCTCTGAACAAGGGCGTACGAAACTAACAGTTGGTGGTCATGGTTTAA
ATGGACACCTTGTTGAAGTCATCATTGGTGTTTCTGTTTGTGAAACTATC
GAAAGTACGTACTCCCAACTGACGTGCTGGTCACCTGCTGATGCATCTGG
CTCAGCAGATATCGAAGTCCAAGACAAAGGATATCAACTTGATGCGCAAA
AGACTGAAACccctttcactttcgtttacgATTCTACTTTAACACCAATA
GCGAAACAAGAAACTAT Run BLAST on NCBI transcript from alignment at scaffold_24:255053..257134- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054124 ID=TCONS_00054124|Name=TCONS_00054124|organism=Clytia hemisphaerica|type=transcript|length=2082bp|location=Sequence derived from alignment at scaffold_24:255053..257134- (Clytia hemisphaerica)
ATTAATTTCAACCAGTGGATCTGTATCTTATAGTCAGTAAGTTGTTTTAT
TATCCATCGTGATATTTGTCTCACTGAACATTGCGCTCTAGCCCGTAGAG
ACTCTTGGATACAGTGAAATAAATGGAGTCACAAAGTGCTCAAGAAAATT
CAAGAAAATTCGAAAAAATTCGTGTGAATTATGAAGAAATAAAGATCTAA
CTTACGATTGCTATGTGGTGTTTCAATATTCATGGTATTGGGTACAAGTG
GAGTAAAGAGAACATCAACATTCTGACTGGTGACACTGTGGAGGTACGTT
CTTTCTGGATGCTGTCTGATGCTAATGTAACTCCCAAATTATTGAGAAAT
AAAAGGGCCCTAGAATACTGTATGGTGTTTCATGCTGGTACAATTTCCAG
GCAATACAGAGTATTGTAGATTTCATTTCAATCATTTTGAAAGTAAGCTA
AATGTGAGAGTGTTCTTCATGTTTTGAAGTTACAGCTCATATTACTAAAA
TGCTTTAAGAAAAGTGTTCGCTAATATGGTTTCACCAGAACCGTTGACAT
TTTCAAATTTTCAAGTTTTCAAATAGTTGGTTTAATTTATTTTGTTCATT
CTATATTTTATAGTGGTCATGGGGTTATTCCCCAGAATCAGGCGTGACAT
CAGGTATCTACCCTTCCGATCCCGATGACATACTCTCGTATGACGCTTCA
AACTTCTACTGTCAACCATCACAATCGGGAACTTGTTCCAAAAGGTTCGA
TTTTGATTATGGCTTCACTAGCGGAACACTTAAAGGATATGGTTTCAGTT
TCGGTGGTAACATCGTGGTCATTGAACGAACTTCGAATGTAGTTGAAGAT
ATCCTCGTCCTTGTTAAAGGTTGGTAGTTAATTGAACTAAGTTATATATC
CTCGCAAGCTTCCCTACTTAACGGGGTTCTTAAAACTTTGAATAAAAATT
TTATTTAATGGAAAATATTTTTATTAAAGAGTGCGAAGTCGGTCTTCGAC
GTAGCTCATATGAGCCTGTACCACGTATTTTTTTATAAAATCTTATTGCG
TTATCTTCTCAACAAAGAAGAGTTTGGTACAAGCTAAGCTCATATTTGAT
TATTTGTTCTTCTAGGGTATGAATCCACCAATACCCTCCCATTCACGTAC
CGGGATGACCGTACACCTAAAATCACATCCATTGAACAAGATCAATCCAC
TGGATTAATGCATCGGTTACCAAGCCAACGGATCAAAATAAATGGTGTTG
GATTCAGTAGCACGCGCTCGAAAAATAATGTCAAGTTTGGTTCACATCTT
TGTGACGTCAAATCTGCAAGTGCGACATCCTTAGAATGTGATATGGATCT
TACAAGCGAACCGCCGATGGATATTTTACTCCCAGTTTCACTTTTGGTTG
AGGGGAAAGGAGACGCTCTTGTGCAAATCCGTTCCGATCTCAATTATTCT
GTTGTCTTTCAACATGAGGTTTCCGGTGTAAGTTTACACCACACATTTCA
CACTGCTTTTAAAATTTCTTGGTAAAAGTGTTCAGTTTTTAGATGTTCCA
TTTTCAAAAGTTCCGAATCCCTTGACACATCATAGCATACAGCAACGATC
AGACGACAAGTAATTTTTCTTTTCAGAGATTGAATAGATCTTCAAGAATA
GGTTACTGAACGGTTGAAATTGTATGTTTTTGCCTCATGTTATTCTGATA
TATAAAGGTCGGTCTCCACTTTCGCGCAAAATGTTGCTCATGTTGCTCGA
AAGTGGAGACCGGCCTTAAGACTTTAATCGTTTATCCCCCCCCTCATACA
GATTTCACCACTACGAGGCTCTGAACAAGGGCGTACGAAACTAACAGTTG
GTGGTCATGGTTTAAATGGACACCTTGTTGAAGTCATCATTGGTGTTTCT
GTTTGTGAAACTATCGAAAGTACGTACTCCCAACTGACGTGCTGGTCACC
TGCTGATGCATCTGGCTCAGCAGATATCGAAGTCCAAGACAAAGGATATC
AACTTGATGCGCAAAAGACTGAAACCCCTTTCACTTTCGTTTACGATTCT
ACTTTAACACCAATAGCGAAACAAGAAACTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054124-exon-scaffold_24-1575043694:256842..257134 | TCONS_00054124-exon-scaffold_24-1575043694:256842..257134 | Clytia hemisphaerica | exon |
| TCONS_00054124-exon-scaffold_24-1575043694:256391..256521 | TCONS_00054124-exon-scaffold_24-1575043694:256391..256521 | Clytia hemisphaerica | exon |
| TCONS_00054124-exon-scaffold_24-1575043694:255658..256019 | TCONS_00054124-exon-scaffold_24-1575043694:255658..256019 | Clytia hemisphaerica | exon |
| TCONS_00054124-exon-scaffold_24-1575043694:255053..255333 | TCONS_00054124-exon-scaffold_24-1575043694:255053..255333 | Clytia hemisphaerica | exon |
| TCONS_00054124-exon-scaffold_24-1510915933:256842..257134 | TCONS_00054124-exon-scaffold_24-1510915933:256842..257134 | Clytia hemisphaerica | exon |
| TCONS_00054124-exon-scaffold_24-1510915933:256391..256521 | TCONS_00054124-exon-scaffold_24-1510915933:256391..256521 | Clytia hemisphaerica | exon |
| TCONS_00054124-exon-scaffold_24-1510915933:255658..256019 | TCONS_00054124-exon-scaffold_24-1510915933:255658..256019 | Clytia hemisphaerica | exon |
| TCONS_00054124-exon-scaffold_24-1510915933:255053..255333 | TCONS_00054124-exon-scaffold_24-1510915933:255053..255333 | Clytia hemisphaerica | exon |
| TCONS_00054124-exon-scaffold_24-1491911889:256842..257134 | TCONS_00054124-exon-scaffold_24-1491911889:256842..257134 | Clytia hemisphaerica | exon |
| TCONS_00054124-exon-scaffold_24-1491911889:256391..256521 | TCONS_00054124-exon-scaffold_24-1491911889:256391..256521 | Clytia hemisphaerica | exon |
| TCONS_00054124-exon-scaffold_24-1491911889:255658..256019 | TCONS_00054124-exon-scaffold_24-1491911889:255658..256019 | Clytia hemisphaerica | exon |
| TCONS_00054124-exon-scaffold_24-1491911889:255053..255333 | TCONS_00054124-exon-scaffold_24-1491911889:255053..255333 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_24 | supercontig | scaffold_24:255053..257134 - |
Blast
The following BLAST results are available for this feature:
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