TCONS_00054122 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054122
Unique NameTCONS_00054122
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length104

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054122 ID=TCONS_00054122|Name=TCONS_00054122|organism=Clytia hemisphaerica|type=transcript|length=104bp
AATCTGTTATTTCCCAATCGGAATTTGGTTGGTCTGGTAATGGTTATTCT
GGCGATAGAGTATGGGGACTAGGAAACTTCAGAATCCCCAAAGCGATGCT
CNtt
Run BLAST on NCBI

transcript from alignment at scaffold_24:215687..216109-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054122 ID=TCONS_00054122|Name=TCONS_00054122|organism=Clytia hemisphaerica|type=transcript|length=423bp|location=Sequence derived from alignment at scaffold_24:215687..216109- (Clytia hemisphaerica)
AATCTGTTATTTCCCAATCGGAATTTGGTTGGTCTGGTAATGGTTATTCT
GGCGATAGAGTATGGGGACTAGGTAAATTCACTGCAAAAAAAATATTATT
AACTATCACGCAGTCAAATTATCAATGACCTTCAATGAATTTAAACACCC
CGCATATGAAATTAATAGCCAGTTTATGTATTTGAACGGTGGAACAGGAA
TAAGTCGCAATTCTGACCACCCTCAGTCAATCAGGGCTAAGATAAAAAAA
TCGAAAGCTAACCGTCTCCATCCCAGGTAAGCTTAAACTCGCTAAAAACT
TTATCCGAGAACCTTTATGCTACTGTTATAACGTACAAGATAGGAGAATT
TGTTCAATCTGTTCATCAACCTGTCCTTATGATAATTTCAGGAAACTTCA
GAATCCCCAAAGCGATGCTCNTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034150XLOC_034150Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054122-exon-scaffold_24-1575043694:216038..216109TCONS_00054122-exon-scaffold_24-1575043694:216038..216109Clytia hemisphaericaexon
TCONS_00054122-exon-scaffold_24-1575043694:215687..215718TCONS_00054122-exon-scaffold_24-1575043694:215687..215718Clytia hemisphaericaexon
TCONS_00054122-exon-scaffold_24-1510915933:216038..216109TCONS_00054122-exon-scaffold_24-1510915933:216038..216109Clytia hemisphaericaexon
TCONS_00054122-exon-scaffold_24-1510915933:215687..215718TCONS_00054122-exon-scaffold_24-1510915933:215687..215718Clytia hemisphaericaexon
TCONS_00054122-exon-scaffold_24-1491911889:216038..216109TCONS_00054122-exon-scaffold_24-1491911889:216038..216109Clytia hemisphaericaexon
TCONS_00054122-exon-scaffold_24-1491911889:215687..215718TCONS_00054122-exon-scaffold_24-1491911889:215687..215718Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:215687..216109 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054122 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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