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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054107 ID=TCONS_00054107|Name=TCONS_00054107|organism=Clytia hemisphaerica|type=transcript|length=832bp
TACGGTGGCATCTTTTCCAGACACATTGGAAATGTAGTTTGGACATCGAC
CGAAATGTAGGATGGTCAACCAACGAGTTATCAAAACTAACCAACCGTCT
AGCTGTAGTTTTGGTTGACCTAGTATTTCTATCTCTAAGATGTGAAATCG
ACCTTCCGAACGTTGTTAAGAAGAAGATTATCAAAAATGGCTTGAAATAT
CCGGTGGGGCTTTCGAACGGATCCTCAAAGAAATATACGGAACTGAATGG
AAAACTGGTTGCAAATGGAGTTTGAAGAAATGGAAATTTGTTGAAGAAAG
TGCAGACCGTCACATTAACTTGTGCGCTGCACAGGTTCATTTGGCCCTGT
TTAGAAGGCTTCGACGCAAACCATTGATTTcttaatttcatgaaatttaa
cGTTGCAGTACATTGGAGATTTCTATTCAAAACTCAGGCTTGTTTCTTGA
CACAACAGTTAGTGGACTGACCTATATCGACGTACTAACGTTACTCCATG
TTGTATTCGAGCCAGCAATACATTTCGTTGATGGATTTGTAAATAAACTG
TTCATATGGTGGTATGTTGATGTGACAATATTATTATTGTTGTAGAATCG
TTAAGTATCAGCATTTTATTAGCCTTGTCATTGTAGGCATGGACGTCTGT
ATCTTTAGAAGTTTGACGTTCTAGTGAATTTCACTGATGTTGCTGGAAAG
ATAATAGTTTTCTTTGGACACCTCTCCAACATTAATATAAATGTTAAACG
TCAGGGAATGAAGAGGTTGACATTTTACATTAGCATATTCTTAAAACAAA
GATACATGTAATCTTAACTGATTGCAAGACTA Run BLAST on NCBI transcript from alignment at scaffold_24:162657..163928- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054107 ID=TCONS_00054107|Name=TCONS_00054107|organism=Clytia hemisphaerica|type=transcript|length=1272bp|location=Sequence derived from alignment at scaffold_24:162657..163928- (Clytia hemisphaerica)
TACGGTGGCATCTTTTCCAGACACATTGGAAATGTAGTTTGGACATCGAC
CGAAATGTAGGTGAGTTTGTATCTTATACCGTATTACTTTAAATAAACGC
CCCTCGAATAAACGCCCCTCTTTATAGGAAAAATTAAACGCCACCTTCAA
ATAAAACCCCCTTCGAATAAACACCACCCCTCTAGGAGGGGCGTTTATTT
GAATCAAATAGCAGTAAGGGAGAATCTTATTAAGGAAAACTTAAAAACGT
GTTTATGATTTTATTCTTTCAGTATTTAAACTGATTTTGACCCATTTTTA
CATCTCAAAAATGACATATTTGGGCTGATGAAAACGAAACGGCAGTCAAG
GTTCCCTTTCACTTTATATAAATGACCTTGGTTAAAGATCATTTTATAAA
CGCCTCCTTCTTTTAAACGCCCCTCCCAGAATCCAAAAGTAATACAGTAT
ACGAATGGTGCCAAAAAAACACGCTTTCACGCTTTTCTTTTAATTTCTAG
GATGGTCAACCAACGAGTTATCAAAACTAACCAACCGTCTAGCTGTAGTT
TTGGTTGACCTAGTATTTCTATCTCTAAGATGTGAAATCGACCTTCCGAA
CGTTGTTAAGAAGAAGATTATCAAAAATGGCTTGAAATATCCGGTGGGGC
TTTCGAACGGATCCTCAAAGAAATATACGGAACTGAATGGAAAACTGGTT
GCAAATGGAGTTTGAAGAAATGGAAATTTGTTGAAGAAAGTGCAGACCGT
CACATTAACTTGTGCGCTGCACAGGTTCATTTGGCCCTGTTTAGAAGGCT
TCGACGCAAACCATTGATTTCTTAATTTCATGAAATTTAACGTTGCAGTA
CATTGGAGATTTCTATTCAAAACTCAGGCTTGTTTCTTGACACAACAGTT
AGTGGACTGACCTATATCGACGTACTAACGTTACTCCATGTTGTATTCGA
GCCAGCAATACATTTCGTTGATGGATTTGTAAATAAACTGTTCATATGGT
GGTATGTTGATGTGACAATATTATTATTGTTGTAGAATCGTTAAGTATCA
GCATTTTATTAGCCTTGTCATTGTAGGCATGGACGTCTGTATCTTTAGAA
GTTTGACGTTCTAGTGAATTTCACTGATGTTGCTGGAAAGATAATAGTTT
TCTTTGGACACCTCTCCAACATTAATATAAATGTTAAACGTCAGGGAATG
AAGAGGTTGACATTTTACATTAGCATATTCTTAAAACAAAGATACATGTA
ATCTTAACTGATTGCAAGACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054107-exon-scaffold_24-1575043694:163869..163928 | TCONS_00054107-exon-scaffold_24-1575043694:163869..163928 | Clytia hemisphaerica | exon |
| TCONS_00054107-exon-scaffold_24-1575043694:162657..163428 | TCONS_00054107-exon-scaffold_24-1575043694:162657..163428 | Clytia hemisphaerica | exon |
| TCONS_00054107-exon-scaffold_24-1510915933:163869..163928 | TCONS_00054107-exon-scaffold_24-1510915933:163869..163928 | Clytia hemisphaerica | exon |
| TCONS_00054107-exon-scaffold_24-1510915933:162657..163428 | TCONS_00054107-exon-scaffold_24-1510915933:162657..163428 | Clytia hemisphaerica | exon |
| TCONS_00054107-exon-scaffold_24-1491911889:163869..163928 | TCONS_00054107-exon-scaffold_24-1491911889:163869..163928 | Clytia hemisphaerica | exon |
| TCONS_00054107-exon-scaffold_24-1491911889:162657..163428 | TCONS_00054107-exon-scaffold_24-1491911889:162657..163428 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_24 | supercontig | scaffold_24:162657..163928 - |
Blast
The following BLAST results are available for this feature:
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