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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054089 ID=TCONS_00054089|Name=TCONS_00054089|organism=Clytia hemisphaerica|type=transcript|length=3307bpRun BLAST on NCBI transcript from alignment at scaffold_24:126660..142860+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054089 ID=TCONS_00054089|Name=TCONS_00054089|organism=Clytia hemisphaerica|type=transcript|length=16201bp|location=Sequence derived from alignment at scaffold_24:126660..142860+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00054089 vs. Swiss-Prot (Human)
Match: FBXW8 (F-box/WD repeat-containing protein 8 OS=Homo sapiens GN=FBXW8 PE=1 SV=2) HSP 1 Score: 179.104 bits (453), Expect = 6.870e-47 Identity = 133/579 (22.97%), Postives = 255/579 (44.04%), Query Frame = 3
Query: 294 AIANKYLNTSIEENKPNSRKRKYSNQDDGNLEACSSKRK-----ESLVDLLIADIDEITCIPFFEMELPKEIAVKVFTYLNVRDLSQCCRASKQWKAIAEDDLIWFNIYKQLKMNGEDLSMIDGYEWKRRVKDAVLKKRHVQQKWKERFCEVYDLEYEKGGILCTTCCYEDDVIVAYLDGSLKIWNLMDRSFGHP-LKERHTRDEDIITDVCCDVKMSKTLCVASFQNGDVMVWRRDNSLSARLVFMTNLASSETWKIGISPCSKYISLNSGPRLKILKEANEEETEQHDVGVD-------HTWNWSTHYEYTFNEKILDLAFIDKV----LVLNLRHKILTIETQNKTHIELDQIAGATFSCLRYSASYLVVAVNGFGYSSLGGFRIRKYCLSTLKELCNMHGSQGRVQCLGYGDKSNTDCLDDQVIVACSNRTIKIYQMTDGKVLSFIPKIGSDVTMLQFDEWKILSGHQDGSIVLWDRHLGTMYWKNTMKHPVKFCHFTDYLLTTINIPIEKFPRNSNWYADDLIQHRKYRGSIRVMNFTKDILHGGSLSKEFHADYDNITGYDYNIELIAPYDNV 1979
A+A + L + P +R + QD + R+ E LVD LI D++E+ +PFF+++LP E+A+ +F YL+ ++L +C + SK WK IAED+++W+ + +Q + + D S+ D WK ++ K+ ++ WK R V +LE+ +LC ++ VI Y G +++W+ + P L+ DE + V+++ +L VA++++G + +W + G P ++ R++ L + ++ T D W E+ + + L + + + + ++ + + L G +CL SA+ + V G G+ G +I Y L + L + C+ +D + ++ + ++I+ + G + + V+ +Q D+WKI+SG ++G + +WD + W+ HPV+ F+ + L T N+P + RN++ D HR++RG IR F D L S + D + + Y++ L PY++V
Sbjct: 54 ALAQRLLEGA--GRPPAARATRAEGQDVASRSRSPLAREGAGGGEQLVDQLIRDLNEMNDVPFFDIQLPYELAINIFQYLDRKELGRCAQVSKTWKVIAEDEVLWYRLCQQ-EGHLPDSSISDYSCWKLIFQECRAKEHMLRTNWKNRKGAVSELEHVPDTVLCDVHSHDGVVIAGYTSGDVRVWDTRTWDYVAPFLESEDEEDEPGMQPNVSFVRINSSLAVAAYEDGFLNIW--------------------DLRTGKYPVHRF---EHDARIQALALSQDDATVATASAFDVVMLSPNEEGYWQIAAEFEVPKLVQYLEIVPETRRYPVAVAAAGDLMYLLKAEDSARTLLYAHGPPVTCLDVSANQVAFGVQGLGWVYEGS-KILVYSLEAGRRLLKLGNVLRDFTCVNL-----SDSPPNLMVSGNMDGRVRIHDLRSGNIALSLSAHQLRVSAVQMDDWKIVSGGEEGLVSVWDYRMNQKLWEVYSGHPVQHISFSSHSLITANVPYQTVMRNAD--LDSFTTHRRHRGLIRAYEFAVDQLAFQSPLPVCRSSCDAMATHYYDLALAFPYNHV 598 The following BLAST results are available for this feature:
BLAST of TCONS_00054089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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