TCONS_00054083 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054083
Unique NameTCONS_00054083
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length425

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054083 ID=TCONS_00054083|Name=TCONS_00054083|organism=Clytia hemisphaerica|type=transcript|length=425bp
ATTTTAGAGAATATTGATTTAAAGATTGATAAAGGGAAATTAATAGCAGT
TATAGGCCAGGTGGGTTGTGGCAAATCTTCATTGTTATCTTCAATACTCG
GTGAAATTGAGAAATTATCTGGCAACGTAATAACGCGCGGTCGAATCGCG
TACGTACCACAACAAGCCTGGATACAAAACCAAAGCCTCCGAGAAAACAT
ATTATTCGGGAAACAATATcgaaatgaaaattataaagAGATTCTAAGAG
CATGTGCATTAGAGACCGACATTGAGCTTCTCCCAGCTTCAGATTTGACG
GAAATCGGTGAAAAAGGAATCAACTTAAGTGGAGGACAAAAGCAAAGAGT
TTCCTTGGCACGTGCAGTTTATGAGAATGCAGACATTTATCTATTTGATG
ATCCTCTTTCTGCAGTTGATGCTCA
Run BLAST on NCBI

protein sequence of TCONS_00054083-protein

>TCONS_00054083-protein ID=TCONS_00054083-protein|Name=TCONS_00054083-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
ILENIDLKIDKGKLIAVIGQVGCGKSSLLSSILGEIEKLSGNVITRGRIA
YVPQQAWIQNQSLRENILFGKQYRNENYKEILRACALETDIELLPASDLT
EIGEKGINLSGGQKQRVSLARAVYENADIYLFDDPLSAVDA
Run BLAST on NCBI

transcript from alignment at scaffold_239:79820..80244

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054083 ID=TCONS_00054083|Name=TCONS_00054083|organism=Clytia hemisphaerica|type=transcript|length=425bp|location=Sequence derived from alignment at scaffold_239:79820..80244 (Clytia hemisphaerica)
TGAGCATCAACTGCAGAAAGAGGATCATCAAATAGATAAATGTCTGCATT
CTCATAAACTGCACGTGCCAAGGAAACTCTTTGCTTTTGTCCTCCACTTA
AGTTGATTCCTTTTTCACCGATTTCCGTCAAATCTGAAGCTGGGAGAAGC
TCAATGTCGGTCTCTAATGCACATGCTCTTAGAATCTctttataattttc
atttcgATATTGTTTCCCGAATAATATGTTTTCTCGGAGGCTTTGGTTTT
GTATCCAGGCTTGTTGTGGTACGTACGCGATTCGACCGCGCGTTATTACG
TTGCCAGATAATTTCTCAATTTCACCGAGTATTGAAGATAACAATGAAGA
TTTGCCACAACCCACCTGGCCTATAACTGCTATTAATTTCCCTTTATCAA
TCTTTAAATCAATATTCTCTAAAAT

Coding sequence (CDS) from alignment at scaffold_239:79820..80244

>TCONS_00054083 ID=TCONS_00054083|Name=TCONS_00054083|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at scaffold_239:79820..80244 (Clytia hemisphaerica)
AGCATCAACTGCAGAAAGAGGATCATCAAATAGATAAATGTCTGCATTCT
CATAAACTGCACGTGCCAAGGAAACTCTTTGCTTTTGTCCTCCACTTAAG
TTGATTCCTTTTTCACCGATTTCCGTCAAATCTGAAGCTGGGAGAAGCTC
AATGTCGGTCTCTAATGCACATGCTCTTAGAATCTctttataattttcat
ttcgATATTGTTTCCCGAATAATATGTTTTCTCGGAGGCTTTGGTTTTGT
ATCCAGGCTTGTTGTGGTACGTACGCGATTCGACCGCGCGTTATTACGTT
GCCAGATAATTTCTCAATTTCACCGAGTATTGAAGATAACAATGAAGATT
TGCCACAACCCACCTGGCCTATAACTGCTATTAATTTCCCTTTATCAATC
TTTAAATCAATATTCTCTAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034133XLOC_034133Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054083-exon-scaffold_239-1491911889:79820..80244TCONS_00054083-exon-scaffold_239-1491911889:79820..80244Clytia hemisphaericaexon
TCONS_00054083-exon-scaffold_239-1510915933:79820..80244TCONS_00054083-exon-scaffold_239-1510915933:79820..80244Clytia hemisphaericaexon
TCONS_00054083-exon-scaffold_239-1575043694:79820..80244TCONS_00054083-exon-scaffold_239-1575043694:79820..80244Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054083-proteinTCONS_00054083-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_239supercontigscaffold_239:79820..80244 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.777155	0.372645	0	0.363887	0.523761	0	9.15615	10.004	1.89278	1.40152	6.52908	3.33564	1.4446	0.567217	0.67047	0.99115	2.56729	3.48549	0.6984	1.27895	2.85359	2.71782	0.425197	0.640686	5.24701	3.92306	0.445721	0.240358	0.389887	0.977607
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003439ABC_transporter-like
IPR017871ABC_transporter_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0016887ATPase activity
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016887 ATPase activity
molecular_function GO:0005524 ATP binding
Blast
[Close]
BLAST of TCONS_00054083 vs. Swiss-Prot (Human)
Match: MRP1 (Multidrug resistance-associated protein 1 OS=Homo sapiens GN=ABCC1 PE=1 SV=3)

HSP 1 Score: 181.415 bits (459), Expect = 1.148e-52
Identity = 96/140 (68.57%), Postives = 115/140 (82.14%), Query Frame = 1 
Query:    4 LENIDLKIDKGKLIAVIGQVGCXXXXXXXXXXXXXXXXXGNVITRGRIAYVPQQAWIQNQSLRENILFGKQYRNENYKEILRACALETDIELLPASDLTEIGEKGINLSGGQKQRVSLARAVYENADIYLFDDPLSAVDA 423
            L  I   I +G L+AV+GQVGCGKSSLLS++L E++K+ G+V  +G +AYVPQQAWIQN SLRENILFG Q     Y+ +++ACAL  D+E+LP+ D TEIGEKG+NLSGGQKQRVSLARAVY NADIYLFDDPLSAVDA
Sbjct:  661 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 800
The following BLAST results are available for this feature:
BLAST of TCONS_00054083 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MRP11.148e-5268.57Multidrug resistance-associated protein 1 OS=Homo ... [more]
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