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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054081 ID=TCONS_00054081|Name=TCONS_00054081|organism=Clytia hemisphaerica|type=transcript|length=3119bp
CGGAGGCTGTTTTGATAGTCAACTGTCGTTGTGTCTCGCGAAACTTGACT
TGAGAATCATCCATCGACTTGTTGCTGTCTTTACATTTCTCCTTATACTT
TTCTACTTCTTTACGGCTGTTTGCAAGTTCACGTTCCGTTGTTTTCAGTT
GTTTTGACATGACATCGCAATCGACAACAGCATCGTTACATTGTTCTTGG
ACACTTAGTAGTTCTTTACTAAGCTCAATCACACGATCACTGGGAGCGCA
ATTTGCACGAAGTTTCGTCTCCAGTTCCTTCACCTTGTTCTTGAGTAAag
tgatttcatttttatggAGCCCGTTCAATTCCTTTTTCTCGAACAAGTCG
AGCATCATGCTTTTGTTCTCCCTGTTGAGTTTATCGTTGTCTTTCTTCAA
TCCCTTGCAGCTGGTAATTTCAGCTTTGGCGTCGGTGTTCTCCTTCTCCA
AAGCCTCTATCTTCAGCTTGAAGGAATCGACTTCCTCTTCGTGTTTCTTT
TCTGCTGCACGAAGTTGATCTTCTAGATTCTCGATCTGATGCTTGAGGCT
GGATACGTCTTCAGCAGGTGAATGACTAGCCTCAGATAGCTCTTGTTGAA
GACTGTTGAGTCTTTCTTCGGCActgtctttttctttcttaagcTCCTCA
GCCTTTTGACTCTCAACTTGCAATTGTTCCTTCAATTGGTCGACCTCGCT
CTGCAAGTCAGTCATTCTTTCTGCCTGAACTTGAAGTTCATTGTCACGTG
ATTCGATCACTGACTCCAGTTCATTTTCTGTCTCtctcaaaagtttttca
atctTCAGACGATCTTCTTCGTATTTCTCTTTCAACGATTCTAGCGTTTG
AGTATGTTCTTTTTGCAAAGAACTTTGTTGTTCAGTTAATCCCGTAATTT
TGTGCGTAGCATCTTCAAGATCTATCTGTGCATCAGAGAGTTTATCTTTC
AAGATATTAGCCTCTGCTTCCACCTGGTCTTTCTGCgctaaaatttcagc
caatttgGCTTCCGTTTCGGAGAGGGTAGATTCTAATTCGTTAAGTCTGG
AATCGTCAGTAGCGGTGGTGGATTCTTTAGCCTCAAGAAGCTCATTTCGA
AGTTGTTGTAGAACTTCCTCAAAATTACTCCTCTCTGCATCAAGGTCATC
CAATGtttgttggttttgattttgtgAATCTTCAAGGAGTTGAGATAACT
CCTCAATATCTTTTGTTTTGGAAGAAATTTCTTCCTCTAGTTTTGAGATT
TGATGTCGGCAATCTCGTTTTTGTTCCTCGAGTTTCGACTCGAGGTGTCG
AGTTGTTCCGAGTTCTTCGGCGAGGATTTGTTCCATTTGTCGTGGCATAT
CTTGGATCGACTTTTCGTGAGCGAGTTTCATCTCCTCTTGCCTGCGAAAA
CATCTGTTATGAGTTTCCTTAAGTGAAGTAAGTTGTTCTTTAAACCCATC
GCGTGAGATGGTCAACATGACAATTTCTTCACCGTCCTTTAGCTTTGAAC
TCTGCAACTCATTGACTCGGACATTTAATTGTTCAATCATAGCTAGTTGT
TCTTCGCttgatttttccaaatcttgcAATTGACAAACtagtttttgatt
ttcctgACTCAGCGTTTCTTTCTCGGCCTCAATGTTGTTTATCTTGGCTT
CCCATTCGCCGCAGCTATCTAGCTTCTCAGCTTTCAACTCCTCGATCAAA
CCATTCAAGATATCTTTCTCATTGCAAAGGCAACGAATCTGTTCATCCAA
TATGGTTTGACCGTTGTAAGCATTTTCTAATTCCTGATCTTGTTGTTCAA
GAATTCGAATCTTGTTTTCCAGATCTTCCTTTGTTAGCTGGAGGCGATCT
TCAAGAAGTTGGATTTTACTCTCAAAATCCTGGCTAGCAGTGGCTGATTT
GTCTTGTTGAAGTTCATTGAACGTTTTTTGTTGATATTTCAAatcttctt
cattttgttgaagtttcttttgaatctttttcttttcgtcGGACAGCTGG
ATGATCGTCGATTCGGCTGATTGTAATGCATCGACTGTTCCAGTCAACTC
TGATGAAAGCTGTTCGTTTCTATCGGCCAATTCCTTGACGTTGGAAACAG
ATTCTTTGAGTTTTTGATGTAACTCCAAAGACTCTTTAGTTTGTTGGTCA
GCGCAAGCTTCGTGCTTCGCGTTGAGTTGGTTGACCAATTCCAACTCTCG
TTGCTTCTCAGCAAGAAGCTCTTTCAATTTTATAACGATAACTTGGGTTT
CTTCAAGCTGCTTTGATTTGGTCTCTAGCGCTTTTGAACCAATGGCAGAT
TGCGATTGACTCACCAAGTCCAATTCGTGTTGTTTTTGGGCAAGAAGATC
CTTCATATTTGAGATGGTGATCTTATTTTGGTCCATTTGTTCAGATTTCT
TCTGAAGAATTTCGATTGATGCAGCATTACCACCAGTTGGTGTTGTTTGT
ATGAGAGctttcaaatcaatcaaatcttGTTTTAGAATATCAATCTCCGA
AACTTTTTGTTCCAAAGATGACAAGCGTCGTTCGGTGGTTGATACTCGTT
GAAGAGAGACATCAGATACCATAGATTCTTCATCAGAGATTAAGAATGGA
GCTGATGGTTGTTGGTGACCAACCGATTGGTAGAGGTTCTTGCATTCAGT
TTCAATCTTCTCTTTGAAACTCTTTACCAACTGTTGTGCTTGTTGTTGCT
CTTCCTTCTTGAGCAGTGTTTTGAAGTTGACAATATCTGCGTCAGTTTCT
CGAATTTTTGTTTTCAGAGCTGAGATCTCTCGATATAAGAGGTCGACGGT
GGTCTTCTTGGCTGCATTGTTTTTGTACAGACTCTTCAATTCTTTCTTAA
TCACTTGAAGCTTGTTGTTCAACTGTTGACGCGATTCTGCTAACGTACGC
AACTTTTTGACAATCAGATTGTGTTGGTTCGTGTCACATCCATGGAAGCT
ATTGTTGTGCTCGGCGAAATCCTTCTCCGTGAGAAAAACGACACTCCCCG
GGCAGCGGTGGCAAGTACGCATGCGTGAGACATCTAAATTGTCGAGAATT
TTTGAATTCATAatcattttgaataaattttctgTAGAACGGTTTACTAA
CGTCCAAACAAAAAGCTAG Run BLAST on NCBI protein sequence of TCONS_00054081-protein >TCONS_00054081-protein ID=TCONS_00054081-protein|Name=TCONS_00054081-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1022bp
MIMNSKILDNLDVSRMRTCHRCPGSVVFLTEKDFAEHNNSFHGCDTNQHN
LIVKKLRTLAESRQQLNNKLQVIKKELKSLYKNNAAKKTTVDLLYREISA
LKTKIRETDADIVNFKTLLKKEEQQQAQQLVKSFKEKIETECKNLYQSVG
HQQPSAPFLISDEESMVSDVSLQRVSTTERRLSSLEQKVSEIDILKQDLI
DLKALIQTTPTGGNAASIEILQKKSEQMDQNKITISNMKDLLAQKQHELD
LVSQSQSAIGSKALETKSKQLEETQVIVIKLKELLAEKQRELELVNQLNA
KHEACADQQTKESLELHQKLKESVSNVKELADRNEQLSSELTGTVDALQS
AESTIIQLSDEKKKIQKKLQQNEEDLKYQQKTFNELQQDKSATASQDFES
KIQLLEDRLQLTKEDLENKIRILEQQDQELENAYNGQTILDEQIRCLCNE
KDILNGLIEELKAEKLDSCGEWEAKINNIEAEKETLSQENQKLVCQLQDL
EKSSEEQLAMIEQLNVRVNELQSSKLKDGEEIVMLTISRDGFKEQLTSLK
ETHNRCFRRQEEMKLAHEKSIQDMPRQMEQILAEELGTTRHLESKLEEQK
RDCRHQISKLEEEISSKTKDIEELSQLLEDSQNQNQQTLDDLDAERSNFE
EVLQQLRNELLEAKESTTATDDSRLNELESTLSETEAKLAEILAQKDQVE
AEANILKDKLSDAQIDLEDATHKITGLTEQQSSLQKEHTQTLESLKEKYE
EDRLKIEKLLRETENELESVIESRDNELQVQAERMTDLQSEVDQLKEQLQ
VESQKAEELKKEKDSAEERLNSLQQELSEASHSPAEDVSSLKHQIENLED
QLRAAEKKHEEEVDSFKLKIEALEKENTDAKAEITSCKGLKKDNDKLNRE
NKSMMLDLFEKKELNGLHKNEITLLKNKVKELETKLRANCAPSDRVIELS
KELLSVQEQCNDAVVDCDVMSKQLKTTERELANSRKEVEKYKEKCKDSNK
SMDDSQVKFRETQRQLTIKTAS Run BLAST on NCBI transcript from alignment at scaffold_239:68601..71719 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054081 ID=TCONS_00054081|Name=TCONS_00054081|organism=Clytia hemisphaerica|type=transcript|length=3119bp|location=Sequence derived from alignment at scaffold_239:68601..71719 (Clytia hemisphaerica)
CTAGCTTTTTGTTTGGACGTTAGTAAACCGTTCTAcagaaaatttattca
aaatgatTATGAATTCAAAAATTCTCGACAATTTAGATGTCTCACGCATG
CGTACTTGCCACCGCTGCCCGGGGAGTGTCGTTTTTCTCACGGAGAAGGA
TTTCGCCGAGCACAACAATAGCTTCCATGGATGTGACACGAACCAACACA
ATCTGATTGTCAAAAAGTTGCGTACGTTAGCAGAATCGCGTCAACAGTTG
AACAACAAGCTTCAAGTGATTAAGAAAGAATTGAAGAGTCTGTACAAAAA
CAATGCAGCCAAGAAGACCACCGTCGACCTCTTATATCGAGAGATCTCAG
CTCTGAAAACAAAAATTCGAGAAACTGACGCAGATATTGTCAACTTCAAA
ACACTGCTCAAGAAGGAAGAGCAACAACAAGCACAACAGTTGGTAAAGAG
TTTCAAAGAGAAGATTGAAACTGAATGCAAGAACCTCTACCAATCGGTTG
GTCACCAACAACCATCAGCTCCATTCTTAATCTCTGATGAAGAATCTATG
GTATCTGATGTCTCTCTTCAACGAGTATCAACCACCGAACGACGCTTGTC
ATCTTTGGAACAAAAAGTTTCGGAGATTGATATTCTAAAACaagatttga
ttgatttgaaagCTCTCATACAAACAACACCAACTGGTGGTAATGCTGCA
TCAATCGAAATTCTTCAGAAGAAATCTGAACAAATGGACCAAAATAAGAT
CACCATCTCAAATATGAAGGATCTTCTTGCCCAAAAACAACACGAATTGG
ACTTGGTGAGTCAATCGCAATCTGCCATTGGTTCAAAAGCGCTAGAGACC
AAATCAAAGCAGCTTGAAGAAACCCAAGTTATCGTTATAAAATTGAAAGA
GCTTCTTGCTGAGAAGCAACGAGAGTTGGAATTGGTCAACCAACTCAACG
CGAAGCACGAAGCTTGCGCTGACCAACAAACTAAAGAGTCTTTGGAGTTA
CATCAAAAACTCAAAGAATCTGTTTCCAACGTCAAGGAATTGGCCGATAG
AAACGAACAGCTTTCATCAGAGTTGACTGGAACAGTCGATGCATTACAAT
CAGCCGAATCGACGATCATCCAGCTGTCCgacgaaaagaaaaagattcaa
aagaaacttcaacaaaatgaagaagatTTGAAATATCAACAAAAAACGTT
CAATGAACTTCAACAAGACAAATCAGCCACTGCTAGCCAGGATTTTGAGA
GTAAAATCCAACTTCTTGAAGATCGCCTCCAGCTAACAAAGGAAGATCTG
GAAAACAAGATTCGAATTCTTGAACAACAAGATCAGGAATTAGAAAATGC
TTACAACGGTCAAACCATATTGGATGAACAGATTCGTTGCCTTTGCAATG
AGAAAGATATCTTGAATGGTTTGATCGAGGAGTTGAAAGCTGAGAAGCTA
GATAGCTGCGGCGAATGGGAAGCCAAGATAAACAACATTGAGGCCGAGAA
AGAAACGCTGAGTcaggaaaatcaaaaactaGTTTGTCAATTgcaagatt
tggaaaaatcaaGCGAAGAACAACTAGCTATGATTGAACAATTAAATGTC
CGAGTCAATGAGTTGCAGAGTTCAAAGCTAAAGGACGGTGAAGAAATTGT
CATGTTGACCATCTCACGCGATGGGTTTAAAGAACAACTTACTTCACTTA
AGGAAACTCATAACAGATGTTTTCGCAGGCAAGAGGAGATGAAACTCGCT
CACGAAAAGTCGATCCAAGATATGCCACGACAAATGGAACAAATCCTCGC
CGAAGAACTCGGAACAACTCGACACCTCGAGTCGAAACTCGAGGAACAAA
AACGAGATTGCCGACATCAAATCTCAAAACTAGAGGAAGAAATTTCTTCC
AAAACAAAAGATATTGAGGAGTTATCTCAACTCCTTGAAGATTcacaaaa
tcaaaaccaacaaaCATTGGATGACCTTGATGCAGAGAGGAGTAATTTTG
AGGAAGTTCTACAACAACTTCGAAATGAGCTTCTTGAGGCTAAAGAATCC
ACCACCGCTACTGACGATTCCAGACTTAACGAATTAGAATCTACCCTCTC
CGAAACGGAAGCcaaattggctgaaattttagcGCAGAAAGACCAGGTGG
AAGCAGAGGCTAATATCTTGAAAGATAAACTCTCTGATGCACAGATAGAT
CTTGAAGATGCTACGCACAAAATTACGGGATTAACTGAACAACAAAGTTC
TTTGCAAAAAGAACATACTCAAACGCTAGAATCGTTGAAAGAGAAATACG
AAGAAGATCGTCTGAagattgaaaaacttttgagaGAGACAGAAAATGAA
CTGGAGTCAGTGATCGAATCACGTGACAATGAACTTCAAGTTCAGGCAGA
AAGAATGACTGACTTGCAGAGCGAGGTCGACCAATTGAAGGAACAATTGC
AAGTTGAGAGTCAAAAGGCTGAGGAgcttaagaaagaaaaagacagTGCC
GAAGAAAGACTCAACAGTCTTCAACAAGAGCTATCTGAGGCTAGTCATTC
ACCTGCTGAAGACGTATCCAGCCTCAAGCATCAGATCGAGAATCTAGAAG
ATCAACTTCGTGCAGCAGAAAAGAAACACGAAGAGGAAGTCGATTCCTTC
AAGCTGAAGATAGAGGCTTTGGAGAAGGAGAACACCGACGCCAAAGCTGA
AATTACCAGCTGCAAGGGATTGAAGAAAGACAACGATAAACTCAACAGGG
AGAACAAAAGCATGATGCTCGACTTGTTCGAGAAAAAGGAATTGAACGGG
CTccataaaaatgaaatcactTTACTCAAGAACAAGGTGAAGGAACTGGA
GACGAAACTTCGTGCAAATTGCGCTCCCAGTGATCGTGTGATTGAGCTTA
GTAAAGAACTACTAAGTGTCCAAGAACAATGTAACGATGCTGTTGTCGAT
TGCGATGTCATGTCAAAACAACTGAAAACAACGGAACGTGAACTTGCAAA
CAGCCGTAAAGAAGTAGAAAAGTATAAGGAGAAATGTAAAGACAGCAACA
AGTCGATGGATGATTCTCAAGTCAAGTTTCGCGAGACACAACGACAGTTG
ACTATCAAAACAGCCTCCG Coding sequence (CDS) from alignment at scaffold_239:68601..71719 >TCONS_00054081 ID=TCONS_00054081|Name=TCONS_00054081|organism=Clytia hemisphaerica|type=CDS|length=3066bp|location=Sequence derived from alignment at scaffold_239:68601..71719 (Clytia hemisphaerica)
atgatTATGAATTCAAAAATTCTCGACAATTTAGATGTCTCACGCATGCG
TACTTGCCACCGCTGCCCGGGGAGTGTCGTTTTTCTCACGGAGAAGGATT
TCGCCGAGCACAACAATAGCTTCCATGGATGTGACACGAACCAACACAAT
CTGATTGTCAAAAAGTTGCGTACGTTAGCAGAATCGCGTCAACAGTTGAA
CAACAAGCTTCAAGTGATTAAGAAAGAATTGAAGAGTCTGTACAAAAACA
ATGCAGCCAAGAAGACCACCGTCGACCTCTTATATCGAGAGATCTCAGCT
CTGAAAACAAAAATTCGAGAAACTGACGCAGATATTGTCAACTTCAAAAC
ACTGCTCAAGAAGGAAGAGCAACAACAAGCACAACAGTTGGTAAAGAGTT
TCAAAGAGAAGATTGAAACTGAATGCAAGAACCTCTACCAATCGGTTGGT
CACCAACAACCATCAGCTCCATTCTTAATCTCTGATGAAGAATCTATGGT
ATCTGATGTCTCTCTTCAACGAGTATCAACCACCGAACGACGCTTGTCAT
CTTTGGAACAAAAAGTTTCGGAGATTGATATTCTAAAACaagatttgatt
gatttgaaagCTCTCATACAAACAACACCAACTGGTGGTAATGCTGCATC
AATCGAAATTCTTCAGAAGAAATCTGAACAAATGGACCAAAATAAGATCA
CCATCTCAAATATGAAGGATCTTCTTGCCCAAAAACAACACGAATTGGAC
TTGGTGAGTCAATCGCAATCTGCCATTGGTTCAAAAGCGCTAGAGACCAA
ATCAAAGCAGCTTGAAGAAACCCAAGTTATCGTTATAAAATTGAAAGAGC
TTCTTGCTGAGAAGCAACGAGAGTTGGAATTGGTCAACCAACTCAACGCG
AAGCACGAAGCTTGCGCTGACCAACAAACTAAAGAGTCTTTGGAGTTACA
TCAAAAACTCAAAGAATCTGTTTCCAACGTCAAGGAATTGGCCGATAGAA
ACGAACAGCTTTCATCAGAGTTGACTGGAACAGTCGATGCATTACAATCA
GCCGAATCGACGATCATCCAGCTGTCCgacgaaaagaaaaagattcaaaa
gaaacttcaacaaaatgaagaagatTTGAAATATCAACAAAAAACGTTCA
ATGAACTTCAACAAGACAAATCAGCCACTGCTAGCCAGGATTTTGAGAGT
AAAATCCAACTTCTTGAAGATCGCCTCCAGCTAACAAAGGAAGATCTGGA
AAACAAGATTCGAATTCTTGAACAACAAGATCAGGAATTAGAAAATGCTT
ACAACGGTCAAACCATATTGGATGAACAGATTCGTTGCCTTTGCAATGAG
AAAGATATCTTGAATGGTTTGATCGAGGAGTTGAAAGCTGAGAAGCTAGA
TAGCTGCGGCGAATGGGAAGCCAAGATAAACAACATTGAGGCCGAGAAAG
AAACGCTGAGTcaggaaaatcaaaaactaGTTTGTCAATTgcaagatttg
gaaaaatcaaGCGAAGAACAACTAGCTATGATTGAACAATTAAATGTCCG
AGTCAATGAGTTGCAGAGTTCAAAGCTAAAGGACGGTGAAGAAATTGTCA
TGTTGACCATCTCACGCGATGGGTTTAAAGAACAACTTACTTCACTTAAG
GAAACTCATAACAGATGTTTTCGCAGGCAAGAGGAGATGAAACTCGCTCA
CGAAAAGTCGATCCAAGATATGCCACGACAAATGGAACAAATCCTCGCCG
AAGAACTCGGAACAACTCGACACCTCGAGTCGAAACTCGAGGAACAAAAA
CGAGATTGCCGACATCAAATCTCAAAACTAGAGGAAGAAATTTCTTCCAA
AACAAAAGATATTGAGGAGTTATCTCAACTCCTTGAAGATTcacaaaatc
aaaaccaacaaaCATTGGATGACCTTGATGCAGAGAGGAGTAATTTTGAG
GAAGTTCTACAACAACTTCGAAATGAGCTTCTTGAGGCTAAAGAATCCAC
CACCGCTACTGACGATTCCAGACTTAACGAATTAGAATCTACCCTCTCCG
AAACGGAAGCcaaattggctgaaattttagcGCAGAAAGACCAGGTGGAA
GCAGAGGCTAATATCTTGAAAGATAAACTCTCTGATGCACAGATAGATCT
TGAAGATGCTACGCACAAAATTACGGGATTAACTGAACAACAAAGTTCTT
TGCAAAAAGAACATACTCAAACGCTAGAATCGTTGAAAGAGAAATACGAA
GAAGATCGTCTGAagattgaaaaacttttgagaGAGACAGAAAATGAACT
GGAGTCAGTGATCGAATCACGTGACAATGAACTTCAAGTTCAGGCAGAAA
GAATGACTGACTTGCAGAGCGAGGTCGACCAATTGAAGGAACAATTGCAA
GTTGAGAGTCAAAAGGCTGAGGAgcttaagaaagaaaaagacagTGCCGA
AGAAAGACTCAACAGTCTTCAACAAGAGCTATCTGAGGCTAGTCATTCAC
CTGCTGAAGACGTATCCAGCCTCAAGCATCAGATCGAGAATCTAGAAGAT
CAACTTCGTGCAGCAGAAAAGAAACACGAAGAGGAAGTCGATTCCTTCAA
GCTGAAGATAGAGGCTTTGGAGAAGGAGAACACCGACGCCAAAGCTGAAA
TTACCAGCTGCAAGGGATTGAAGAAAGACAACGATAAACTCAACAGGGAG
AACAAAAGCATGATGCTCGACTTGTTCGAGAAAAAGGAATTGAACGGGCT
ccataaaaatgaaatcactTTACTCAAGAACAAGGTGAAGGAACTGGAGA
CGAAACTTCGTGCAAATTGCGCTCCCAGTGATCGTGTGATTGAGCTTAGT
AAAGAACTACTAAGTGTCCAAGAACAATGTAACGATGCTGTTGTCGATTG
CGATGTCATGTCAAAACAACTGAAAACAACGGAACGTGAACTTGCAAACA
GCCGTAAAGAAGTAGAAAAGTATAAGGAGAAATGTAAAGACAGCAACAAG
TCGATGGATGATTCTCAAGTCAAGTTTCGCGAGACACAACGACAGTTGAC
TATCAAAACAGCCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054081-exon-scaffold_239-1491911889:68601..71719 | TCONS_00054081-exon-scaffold_239-1491911889:68601..71719 | Clytia hemisphaerica | exon |
| TCONS_00054081-exon-scaffold_239-1510915933:68601..71719 | TCONS_00054081-exon-scaffold_239-1510915933:68601..71719 | Clytia hemisphaerica | exon |
| TCONS_00054081-exon-scaffold_239-1575043694:68601..71719 | TCONS_00054081-exon-scaffold_239-1575043694:68601..71719 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_239 | supercontig | scaffold_239:68601..71719 . |
Blast
The following BLAST results are available for this feature:
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