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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054075 ID=TCONS_00054075|Name=TCONS_00054075|organism=Clytia hemisphaerica|type=transcript|length=450bp tgaaacttgaaaaattttatGGTACAAGTTGTCATATGGCTTGAGGCGTT TGAGAAGTGGTGTCTAAAAATAGTTTGTAGAAACTGAAGAAACAAGATTG GAAACAAAATGAACAAGTTACCGATGAAAGATGCCAACTTCTTGTCCAGA ATTACTTTCTGGTGGGTGACGAAATTTATCATAAAGGGCTCAAAACAAAC AATAACGAATGAAGACATTTGGGCATTGGAAGATGAAAATTCTGCTGAAA CAATCAGCAAAGAATTTCAAGCAGAATGGAGCCGAGAAGCCGAAAGGAAA AAGCTGCAGAAATCCAAAGGAGATGGCAACGAAAAACCTTTTCTCACAAC AATTTTTGTCAGGATGTATTGGAGGAAGTACCTCTTTTGCTGTTTGTTCA AACTTATCGCTGATTTTTTCATATTATCAACACCATACATACTTGGGTAA Run BLAST on NCBI protein sequence of TCONS_00054075-protein >TCONS_00054075-protein ID=TCONS_00054075-protein|Name=TCONS_00054075-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MNKLPMKDANFLSRITFWWVTKFIIKGSKQTITNEDIWALEDENSAETIS KEFQAEWSREAERKKLQKSKGDGNEKPFLTTIFVRMYWRKYLFCCLFKLI ADFFILSTPYILG Run BLAST on NCBI transcript from alignment at scaffold_239:99414..106638- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054075 ID=TCONS_00054075|Name=TCONS_00054075|organism=Clytia hemisphaerica|type=transcript|length=7225bp|location=Sequence derived from alignment at scaffold_239:99414..106638- (Clytia hemisphaerica) TGAAACTTGAAAAATTTTATGGTACAAGTAAGTTTGGATTTTCTCTTACT
CGAACATATTATTTTTCTCAAAAATTGAGTCCCAGAGATTTTCAGGATTC
TTCTTTGCAAGATTTGTCACATACATGCTACTGGAAAGTTTTGAAAATTG
ATTGAGAATGAGCGTCAGAGCTCCAAAAATTCAAAATAACATGAAAGTGC
TGAAAGTCGTGATCTTGTGCAAAATTTCGAAATAAAGTCAATCAGATCAT
TAATTTTAGCATGCCTTGTTAATAAGGTTAAAGATTTTTTTCTAGCCTTC
GCCCATATCTCGTATGGGGAGCACTGGAATTGCAAGCCTACATTTTATCG
ACCTTTCAAAGCATTTTGTATACCTTTGAAAAGACACCCTTAACCCGTAG
ATACTATCAGTTGTTCTGCCTGCCCTCTCGTTGTGTTATTCAAGCTTGAA
AAAGATGGCTCAGAAAGTTGAAAGTTCGAGCAAGAGTGGTTAACAATTTT
GCTTCAAATTTTTTTGTTTTTTTGTTCGGTAAAAAAGGTCATTAAGAAGC
AATTATCCTTTTGATTTGATTTTGTCGCTAACGCTTAATCGATTGGGCGT
CATTCATTCCACAGGTTGTCATATGGCTTGAGGCGTTTGAGAAGTGGTGT
CTAAAAATAGTTTGTAGAAACTGAAGAAACAAGATTGGAAACAAAATGTA
AGTTGCTATTAACTTTTGCTACATGCTAACCTACATTTTTTATCTGTTTT
TATTGTTTATACTATGCTATAAGAGCTCATACTCACTGAAAAATTAAATA
AAAGTATCATCCTCACTGGATTGTTTTCAGCAACAATCTTTACAATTATC
CATATTATTACATTTTTGACAAATCCTCATTTACATATAATTATTATGCG
GTCAGGAGGATGGAAGCATTTAACATAGACGATGTTATCGTCCGATAAGA
AGATTAGCGCGCGGGAAAATAAGGTGCGGGAGGTTAAAGCCGTTATGGCT
GCAGAGGAAAGATGCCGCGGAAGTGATGGTGAAGTGAATTATACGGGAAC
AGCTGCCCCCGAAAAAACTCCCGTCTTCACGTTTGTTCCTCTTAGATGAA
ACTCGTCTTAGACTATATTTAACACAAAGGGGGGGGGGGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTGTAGCAAAACTAACCCATAATCCCCAATGCATGCTGGCA
GGAATTCAAATTGTTGTTTAGGAGGTAGCAGGAGGCGCAACCATGGTTTG
CGCGGACGGAAAATTTTTCAGTTTTCTAGCTTTCGTTAGGCTAAAAACGC
CCTTTTTAGACACTTTTTTCCGAAAATAAGCTGGCTTAGTGAATCAATAC
TATTCAATACGGGTTTCTGCATTTATTATGTTGGTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNATGTTGGTTGCCCTCGATGGAGAAAA
CTTTTGTATTTTCTCAACCCTCCATGCGAGCGAAGTGAGCGAGAAAAAAA
TTGATGGACTTATTTGTGCCGAGATTTTGTGCAAGTTACTTTTGTCCACG
ATTTTAAACTCAAAAATTATATATAATCTCTAAAATCGTGTTTGAAAAAG
CATCTTATGAGGCCCTAGAAGTATTACTGGACTGGACTATTTTATTTTCT
GCTGGTCATATATACACAGTAGAGTGATGGGTAGGTCAAGGGTGGGGAGG
CAAAAGTAGAATTTTAGCTGAAGGCATAGGCAAATTCTGGCGCCCCCTTT
TTGGTCACATTAGTATACAAAAATTTGTTTAACTTGAACTTTTGGTCATT
TTAGAAACATTTAGGAAATGAGAGCGAAGCGAGTAAGAAAAATTTGCGAC
ATTGTTTATCGAGATGAATTGCGTAAAGTCAATTAGAGTATAACTAGACG
GTTCCCGTCGTCGCAAACGCCGGTTAACTGTTTTGCTTGCACATCAAAAG
CCTTTAAAATACTCTGATGTGGGTTAATGCCTGACATCGTTTTGGCTTAG
AATGCCGAATACAATAATAAAAATTATACTTCTAAATTTTCTACATTAGT
CAAAATTTTGTGTCTGTAAGCCTCGATGATATGTCTTTTTGAGATAACGG
AAGTTTTTGTTCAATGAAATGCCATAGTGACCCTGTCAAAATTATGGAGG
GTACCCATCGTTGCTTCTAGGAAAGAAAAAGCCTTAGTTGTGAAGGAGAG
GCTCGCGCTTTGCGGTTGAGCGCTAAAGGTTTTCCCGTTTGTTGGCTTCA
CACGCGGACAGCTTAAGACCGGCGCATATGCAATGCAACACACATTGAAA
CCTTTTTAAATAATGTTAGACGAAGTTTAATTATCAAACAACAATGTTGG
ATTTTGTTGCGTGTGTTGATATAAAATAATTCGAAATCGTGCAACAAAAA
TGCCACACCTTTTTATTTGAAACTTTGTGACGTCGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCTTTTTCATGAAATTGACGTCAGAACTTTTT
TCGTTTACAAATAGCAGTGTAGAGTCTTCTCTAATCCGAGTTTTCTACGC
TTGTCAAACTTAGCGCGAGAATTTTTGTATCAAAAGTGGATAGGTTTTCC
AGCCGCGGCGTTCAAATTTTAGAAATCTTAACATATGTCACTGGGCTAGC
GTTACAGACATTTTTCATAAACTCATTTAGTATAGTAAGATGATACTGAA
ATGCGAGCGAAGCAAGCACAAAATTTTCGACTAGAAAAGGAACAAAATAA
AACCACGTTAAATTATTTTAATAACTTTATAGAATTATAAAAACTTTAAA
ATTAGGCATATAATATATGACAAATCTTATGAAAAATTCCACATACGATC
CTTTAGGAACTATTATTGGTTATGCCTATTCTAAAAAATTCAATGCAAAA
AGTTGACTCTGTTTGACGCGAGCGAAGGGAGGGAAAAATCTTTCCAAAAT
AGAGCTTAAATTTGAGCAAAAGTTTAGTAAAAGGGCGCCTTAAAGGGAAA
GGGGCGCTAAAGTTACATACTGAAGAGCAAATACGAAAGAAAACTTCCTT
CTTTTGGCGCCCCTTCAAAAAGCCTCCACTGGGAGGGGGGGCACACCACG
CTACTGTATGTAAACAATTTTTTCCATCAGAGCTTTTACTAATGGGCTAT
TGCTGAACATATGTTATTTAACTAGGTCATTCCTGGTGTTTTCTGCGAGC
GAAGCGAGCAAAGAAAATTTTACTTCTTGATTTTTGGTTATTTATGCACA
AGGATAATCAATTCTCAGTAACCGACGTATGTGATAATCACCGAAAAACC
GCTATTTTTTTATTTTTTCACCGATAAACCGAACAAAAGCAGCTCAATCA
CCGACACCGTGATGTTTTCCCTTCACCGATAAACCGACATATTTCGAGCT
CTTCACCGATAAACCGGCAAAAAAAGGGCCAAAACCGACAAACCGCGCAA
AACCACTTTCCCGTACGCCCCCATCACACAAAGCGCTATAATATGCGAAA
CACACCTTTTCGACCGTAGTCGCGAGGTCAGGCGCGTGCCACTTCACTAT
TTAAGTTACCACCCTAAACTCGATTACCAGTGGATACCCCTTAAAACCCA
CAATAAAAAGTGGTACCCTCTATCTCATTGTTTAGTTGGAGTGTAAGGTT
GAAACTTTTTGTGTTGAAAGTACGTTGTCTATGATTGTCTTCCCTAGCAG
TGATGTTTTGTAGAAAACAGTTTTCAGTTTTTCACGAGGAAGTGAAAAAG
TGCAGTTTTAGCTATTTACCCCTTAAAACCTACAAAATGGTTTTTCTCGA
ATAACTTTTTACAAAAAAGTTCTTTTGACTTGAAATTTTGAACAGTGATT
CACTGTAAAGTTACTAATGTTATGAATGTACCATTAGTACCTAAATGATC
TCAAAAATATGTGTTAAAATCAAAATACCCCTTAAAACCTACAAAAATAA
GGCTAAAAACCACAAAGTCCGACCCTTGCTAACGGGATACTCAAGCTGAT
GGATACAAATTTGGTGTTGCTTCGTGATTCAATGGTTCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTTTCAGATTTTATTGATCATCACCATAAAAGTGCTTTAAAG
TAGAATTTTAAGGGCCTGTCATTTTCGTTGGGGTCTATTCACGAAGATGA
AAATGATTTTTTAATACCTACCATAAGTATAGGTATCTAAAAAGTATAGG
TTTTGTGACCTTAAATTCAATTGTGTAATTTCTAGGTCCAAAAAACCTGA
TTTTTTGAAGGGATTTTTGATAAAATATTGAATAACTTCGAATTTTAAGA
TACTTTAGCATCTTTAAAATCCTTAAAATTTGGTATTTTATGAAAGAACA
TTTATAAGAGGTTGTAAAAAAGTGAAACATACCANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNAAACATACCACATAAAATTAAATCTGGTA
GTTATGAAAGCCAAAAATGCAACATTGTGGGTTTTAAGGGGTATGTGGTT
TTAAGGGGTATCCACTGGTAAATCCTTTTTTTACACTTTTTTCTATTGTC
TTTTTAGGCCCGAAAAAAAAGCTGGGTGGTTTTAGGGTGATAAAACGGAC
AAAAAAATGCCCGCGCGGCAATTGGTGGCTACGGTCGAAAAGGTTGTATA
TTGTCTCACAGTTGAAATGTACTCTAAGCGCAACAATTCTTGGACTTTTT
TCTAGCCCCATCGGGCTTTGAACTCGTGGGTGTATCTCTTTCACCGATTA
GGTTGCACATAGAGGATATTCTCTTATCAAATCTCAAATTTAAAATGAAT
GAATCAATGATACTTCAACTTTTCACAACTTACTTCGTGGTTAAAACATT
CAAAAGAGACAAAACGCGTGATAAAATAAAAGATAAGCGATAGCACTTCT
CGCAGTTCTCCTAAAGTTTTGATATCTAATTCATTATCTTTTTATTTATT
TCTAACAAGTATTAGTAGAGGTAGAAAGATAATGAGATTTGTTTTGCATG
TTTTGTAGGATTATATACTGTTAGGAAAACTGATTTCGTGGCGTGTGCTT
TGTAACCTTTTCTATATTAACCTAATGCTTGTAAAAAAAGAACTAAAAGA
CAGGGAAAGGGTTACTCAAGTTTTTGAAAATATCTAGCATGTTTTAAGCT
ATATGTGCTGCCTGGTGATGGTCTTTTCTTCGACCTCGTCCTATGTACAG
GATGTTTCACTATCATTTCAGGAACAAGTTACCGATGAAAGATGCCAACT
TCTTGTCCAGAATTACTTTCTGGTGGGTGACGAAGTAAGAGTTATTATTC
TTTGTTATACCAATCACGCTGACTGGTTATTTATAAACAACTTCAACAAT
CTGGTGAATCTATACCTAAAGCCTTGCATTACTTTTTGATTTTACTGATT
GATTTTGAAGGTCATTTGATACGAATCGACCCCGTCGTGAGCTCTATTTG
TACGTTAATGAACAAATACGAACCCATCTCCCTCGCTTCGCTTTTTTAGG
ATTAAGAGAACGCTCACAAAAGGCTCTAGGAAATAGAAAAAAAGATTTTA
TCACTTCCATCGTTAATAAGTGCAAGTGGCTCTGTGTACGCGTTCTCAGT
AAATATCGAAGAAATTTGGTGAAAAACCCATCTCATAGGTTCCATAGGTT
AAAGTTGTGTAAGCGGAGTGGTAGGGGTGGAATATCTATTCCATGTCTTT
CGAGTGCGTGTTCCTTTTGCCAAATATATTGGACATAATCAAAAGACTAT
GGTATGAAGTTTATCTTTATGTTTCCATTCTAGATTTATCATAAAGGGCT
CAAAACAAACAATAACGAATGAAGACATTTGGGCATTGGAAGATGAAAAT
TCTGCTGAAACAATCAGCAAAGAATTTCAAGCAGAATGGAGCCGAGAAGC
CGAAAGGTGCGAAGCCATAAGAAAAAAATGCCGCTAGCGAAAAATTCCCC
GTTGTCCGGTTTCATAATAGGAAAAAAGCCCGCGAAAAAAATAAACACGA
GGTTCCACTTTCGTTTTCAAATTCTCTGAAATTTTTTTGGCTTTGAGTCA
TTTTTTAGAAGATTGGATAGATTGGAACATGTCAGTAGTTATTCTCTTTG
AATATTTTTCTTTTGAACCAGGAAAAAGCTGCAGAAATCCAAAGGAGATG
GCAACGAAAAACCTTTTCTCACAACAATTTTTGTCAGGATGTATTGGAGG
AAGTACCTCTTTTGCTGTTTGTTCAAACTTATCGCTGATTTTTTCATATT
ATCAACACCATACATACTTGGGTAA Coding sequence (CDS) from alignment at scaffold_239:99414..106638- >TCONS_00054075 ID=TCONS_00054075|Name=TCONS_00054075|organism=Clytia hemisphaerica|type=CDS|length=1368bp|location=Sequence derived from alignment at scaffold_239:99414..106638- (Clytia hemisphaerica) GAAAAAGCTGCAGAAATCCAAAGGAGATGGCAACGAAAAACCTTTTCTCA CAACAATTTTTGTCAGGATGTATTGGAGGAAGTACCTCTTTTGCTGTTTG TTCAAACTTATCGCTGATTTTTTCATATTATCAACACCATACATACTTGG GTAAATTTATCATAAAGGGCTCAAAACAAACAATAACGAATGAAGACATT TGGGCATTGGAAGATGAAAATTCTGCTGAAACAATCAGCAAAGAATTTCA AGCAGAATGGAGCCGAGAAGCCGAAAGGAACAAGTTACCGATGAAAGATG CCAACTTCTTGTCCAGAATTACTTTCTGGTGGGTGACGAAATGAAAAAGC TGCAGAAATCCAAAGGAGATGGCAACGAAAAACCTTTTCTCACAACAATT TTTGTCAGGATGTATTGGAGGAAGTACCTCTTTTGCTGTTTGTTCAAACT TATCGCTGATTTTTTCATATTATCAACACCATACATACTTGGGTAAATTT ATCATAAAGGGCTCAAAACAAACAATAACGAATGAAGACATTTGGGCATT GGAAGATGAAAATTCTGCTGAAACAATCAGCAAAGAATTTCAAGCAGAAT GGAGCCGAGAAGCCGAAAGGAACAAGTTACCGATGAAAGATGCCAACTTC TTGTCCAGAATTACTTTCTGGTGGGTGACGAAATGAAAAAGCTGCAGAAA TCCAAAGGAGATGGCAACGAAAAACCTTTTCTCACAACAATTTTTGTCAG GATGTATTGGAGGAAGTACCTCTTTTGCTGTTTGTTCAAACTTATCGCTG ATTTTTTCATATTATCAACACCATACATACTTGGGTAAATTTATCATAAA GGGCTCAAAACAAACAATAACGAATGAAGACATTTGGGCATTGGAAGATG AAAATTCTGCTGAAACAATCAGCAAAGAATTTCAAGCAGAATGGAGCCGA GAAGCCGAAAGGAACAAGTTACCGATGAAAGATGCCAACTTCTTGTCCAG AATTACTTTCTGGTGGGTGACGAAATGAAAAAGCTGCAGAAATCCAAAGG AGATGGCAACGAAAAACCTTTTCTCACAACAATTTTTGTCAGGATGTATT GGAGGAAGTACCTCTTTTGCTGTTTGTTCAAACTTATCGCTGATTTTTTC ATATTATCAACACCATACATACTTGGGTAAATTTATCATAAAGGGCTCAA AACAAACAATAACGAATGAAGACATTTGGGCATTGGAAGATGAAAATTCT GCTGAAACAATCAGCAAAGAATTTCAAGCAGAATGGAGCCGAGAAGCCGA AAGGAACAAGTTACCGATGAAAGATGCCAACTTCTTGTCCAGAATTACTT TCTGGTGGGTGACGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00054075-exon-scaffold_239-1575043694:106612..106638 | TCONS_00054075-exon-scaffold_239-1575043694:106612..106638 | Clytia hemisphaerica | exon |
TCONS_00054075-exon-scaffold_239-1575043694:105942..106024 | TCONS_00054075-exon-scaffold_239-1575043694:105942..106024 | Clytia hemisphaerica | exon |
TCONS_00054075-exon-scaffold_239-1575043694:100405..100467 | TCONS_00054075-exon-scaffold_239-1575043694:100405..100467 | Clytia hemisphaerica | exon |
TCONS_00054075-exon-scaffold_239-1575043694:99783..99905 | TCONS_00054075-exon-scaffold_239-1575043694:99783..99905 | Clytia hemisphaerica | exon |
TCONS_00054075-exon-scaffold_239-1575043694:99414..99567 | TCONS_00054075-exon-scaffold_239-1575043694:99414..99567 | Clytia hemisphaerica | exon |
TCONS_00054075-exon-scaffold_239-1510915933:106612..106638 | TCONS_00054075-exon-scaffold_239-1510915933:106612..106638 | Clytia hemisphaerica | exon |
TCONS_00054075-exon-scaffold_239-1510915933:105942..106024 | TCONS_00054075-exon-scaffold_239-1510915933:105942..106024 | Clytia hemisphaerica | exon |
TCONS_00054075-exon-scaffold_239-1510915933:100405..100467 | TCONS_00054075-exon-scaffold_239-1510915933:100405..100467 | Clytia hemisphaerica | exon |
TCONS_00054075-exon-scaffold_239-1510915933:99783..99905 | TCONS_00054075-exon-scaffold_239-1510915933:99783..99905 | Clytia hemisphaerica | exon |
TCONS_00054075-exon-scaffold_239-1510915933:99414..99567 | TCONS_00054075-exon-scaffold_239-1510915933:99414..99567 | Clytia hemisphaerica | exon |
TCONS_00054075-exon-scaffold_239-1491911889:106612..106638 | TCONS_00054075-exon-scaffold_239-1491911889:106612..106638 | Clytia hemisphaerica | exon |
TCONS_00054075-exon-scaffold_239-1491911889:105942..106024 | TCONS_00054075-exon-scaffold_239-1491911889:105942..106024 | Clytia hemisphaerica | exon |
TCONS_00054075-exon-scaffold_239-1491911889:100405..100467 | TCONS_00054075-exon-scaffold_239-1491911889:100405..100467 | Clytia hemisphaerica | exon |
TCONS_00054075-exon-scaffold_239-1491911889:99783..99905 | TCONS_00054075-exon-scaffold_239-1491911889:99783..99905 | Clytia hemisphaerica | exon |
TCONS_00054075-exon-scaffold_239-1491911889:99414..99567 | TCONS_00054075-exon-scaffold_239-1491911889:99414..99567 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_239 | supercontig | scaffold_239:99414..106638 - |
Blast
The following BLAST results are available for this feature:
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