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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054045 ID=TCONS_00054045|Name=TCONS_00054045|organism=Clytia hemisphaerica|type=transcript|length=1269bp
AGGTAAATGCCtcaccgactgagctacccgacCACCTTATATTCTAATTG
TGGTACATAGTACAATTTAATTCACTACTATCTTTTTCAGTACAAGAACT
ATAAAAATGGTTTTAGTGGGTGTCATCGGTGGTACAGGCGGATGTGGAGT
GCCACTTATTAATTACCTCCTCGATAAAGGATACAGTGTACGAATGCTTG
CGCGGACACCAGAGAAAGTGGAACAAAAAGACAACCCAGAAGTGACTGTC
ATCAAAGGCGATGCTTTGAATGAAGAGGACATTGCTCAAGTTTGTCAAGA
TGTTGATATCCTCATCTCATGTGCTGGTGGAGGTCCTGGTGTGCGTATCA
TGGAAAAACTGGCATCTAATGTCGTCAAAGCAAAGCCGAAACGTTGTTAT
TTTATCACCTCATTAGGAATGGGTGGTAGCTCCACTGCTGTTAATTTATT
GCTTAGTTTGGTGGTTGGTCGAAAGAACATCGTTGACTGTGACAAAGCAG
ATTCTCTTATCTTCGAGAAAGGTTATACAGTTGTTCGTCCTTGTGAATTG
AAAGGCGATCCTTTGGGTGATTATTACGCTACTTCCAAGACTGGAATGTC
TATCAAAGCCATTTCCAAAACTGATGTCGCCTTGTTTCTTGCAAACTGTG
TGGAAAATACAGAATGGGATGGAAAACCTGTGCAGCTGTACAATGCAGCC
TGTAAAAAGTAATTGGATTGTTTGTATAATAATGTATTAAAGTCGGccta
aaatggtcaaaaatgaCCAGGATCAGTAAAAATTGTCCAACTTCACAATG
CTGCAACTTTTTATCTAGGACAATAATACGTAAAATGTGAAcacagattt
gaaatcagcaagatttaaattttctaaaaagcttGATATCATGGTTTTAG
AAcagtagaaaaaatatttacttcgtttttcttctttatttttcaatttt
tcaaaaatctttatcctttagattattctcctttgaaatatctttccaac
agagCATAGCTTTCCAATATAgcataaataaatgaataataaataaataa
ataaataaataaatgctcaaaaactaaagcgtccacatacttttgagaca
gaccatagacagactttaatttatTCAGTAACTTATTCCTAAATATTTAT
GAAAAATCTATGATCAAGAAAAttacttcattttctttttcgtccACACT
TGCTTATAAGACTTTGCATATTACATTACATTAAAAATATATCGCGATTT
AGATAAATAAATGgctgaa Run BLAST on NCBI protein sequence of TCONS_00054045-protein >TCONS_00054045-protein ID=TCONS_00054045-protein|Name=TCONS_00054045-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MVLVGVIGGTGGCGVPLINYLLDKGYSVRMLARTPEKVEQKDNPEVTVIK
GDALNEEDIAQVCQDVDILISCAGGGPGVRIMEKLASNVVKAKPKRCYFI
TSLGMGGSSTAVNLLLSLVVGRKNIVDCDKADSLIFEKGYTVVRPCELKG
DPLGDYYATSKTGMSIKAISKTDVALFLANCVENTEWDGKPVQLYNAACK
K Run BLAST on NCBI transcript from alignment at scaffold_238:95782..97050 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054045 ID=TCONS_00054045|Name=TCONS_00054045|organism=Clytia hemisphaerica|type=transcript|length=1269bp|location=Sequence derived from alignment at scaffold_238:95782..97050 (Clytia hemisphaerica)
ttcagcCATTTATTTATCTAAATCGCGATATATTTTTAATGTAATGTAAT
ATGCAAAGTCTTATAAGCAAGTGTggacgaaaaagaaaatgaagtaaTTT
TCTTGATCATAGATTTTTCATAAATATTTAGGAATAAGTTACTGAataaa
ttaaagtctgtctatggtctgtctcaaaagtatgtggacgctttagtttt
tgagcatttatttatttatttatttatttattattcatttatttatgcTA
TATTGGAAAGCTATGctctgttggaaagatatttcaaaggagaataatct
aaaggataaagatttttgaaaaattgaaaaataaagaagaaaaacgaagt
aaatattttttctactgTTCTAAAACCATGATATCaagctttttagaaaa
tttaaatcttgctgatttcaaatctgtgTTCACATTTTACGTATTATTGT
CCTAGATAAAAAGTTGCAGCATTGTGAAGTTGGACAATTTTTACTGATCC
TGGtcatttttgaccattttaggCCGACTTTAATACATTATTATACAAAC
AATCCAATTACTTTTTACAGGCTGCATTGTACAGCTGCACAGGTTTTCCA
TCCCATTCTGTATTTTCCACACAGTTTGCAAGAAACAAGGCGACATCAGT
TTTGGAAATGGCTTTGATAGACATTCCAGTCTTGGAAGTAGCGTAATAAT
CACCCAAAGGATCGCCTTTCAATTCACAAGGACGAACAACTGTATAACCT
TTCTCGAAGATAAGAGAATCTGCTTTGTCACAGTCAACGATGTTCTTTCG
ACCAACCACCAAACTAAGCAATAAATTAACAGCAGTGGAGCTACCACCCA
TTCCTAATGAGGTGATAAAATAACAACGTTTCGGCTTTGCTTTGACGACA
TTAGATGCCAGTTTTTCCATGATACGCACACCAGGACCTCCACCAGCACA
TGAGATGAGGATATCAACATCTTGACAAACTTGAGCAATGTCCTCTTCAT
TCAAAGCATCGCCTTTGATGACAGTCACTTCTGGGTTGTCTTTTTGTTCC
ACTTTCTCTGGTGTCCGCGCAAGCATTCGTACACTGTATCCTTTATCGAG
GAGGTAATTAATAAGTGGCACTCCACATCCGCCTGTACCACCGATGACAC
CCACTAAAACCATTTTTATAGTTCTTGTACTGAAAAAGATAGTAGTGAAT
TAAATTGTACTATGTACCACAATTAGAATATAAGGTGgtcgggtagctca
gtcggtgaGGCATTTACCT Coding sequence (CDS) from alignment at scaffold_238:95782..97050 >TCONS_00054045 ID=TCONS_00054045|Name=TCONS_00054045|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_238:95782..97050 (Clytia hemisphaerica)
TTACTTTTTACAGGCTGCATTGTACAGCTGCACAGGTTTTCCATCCCATT
CTGTATTTTCCACACAGTTTGCAAGAAACAAGGCGACATCAGTTTTGGAA
ATGGCTTTGATAGACATTCCAGTCTTGGAAGTAGCGTAATAATCACCCAA
AGGATCGCCTTTCAATTCACAAGGACGAACAACTGTATAACCTTTCTCGA
AGATAAGAGAATCTGCTTTGTCACAGTCAACGATGTTCTTTCGACCAACC
ACCAAACTAAGCAATAAATTAACAGCAGTGGAGCTACCACCCATTCCTAA
TGAGGTGATAAAATAACAACGTTTCGGCTTTGCTTTGACGACATTAGATG
CCAGTTTTTCCATGATACGCACACCAGGACCTCCACCAGCACATGAGATG
AGGATATCAACATCTTGACAAACTTGAGCAATGTCCTCTTCATTCAAAGC
ATCGCCTTTGATGACAGTCACTTCTGGGTTGTCTTTTTGTTCCACTTTCT
CTGGTGTCCGCGCAAGCATTCGTACACTGTATCCTTTATCGAGGAGGTAA
TTAATAAGTGGCACTCCACATCCGCCTGTACCACCGATGACACCCACTAA
AACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054045-exon-scaffold_238-1491911889:95782..97050 | TCONS_00054045-exon-scaffold_238-1491911889:95782..97050 | Clytia hemisphaerica | exon |
| TCONS_00054045-exon-scaffold_238-1510915933:95782..97050 | TCONS_00054045-exon-scaffold_238-1510915933:95782..97050 | Clytia hemisphaerica | exon |
| TCONS_00054045-exon-scaffold_238-1575043694:95782..97050 | TCONS_00054045-exon-scaffold_238-1575043694:95782..97050 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_238 | supercontig | scaffold_238:95782..97050 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR016040 | NAD(P)-bd_dom |
Blast
The following BLAST results are available for this feature:
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