TCONS_00054044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054044
Unique NameTCONS_00054044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length240

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054044 ID=TCONS_00054044|Name=TCONS_00054044|organism=Clytia hemisphaerica|type=transcript|length=240bp
ATCAAATTGAATCAATaattgaaaaagccaaaaacatCATTTCTTGGATA
TTACGTACCTTCACTTCCCGCTCTACACATACCATGATCAATCTCTATAA
ATCACTTGTGATCCCTATACTGGAATATTGCTCAGCGTTATAGAGCCCCA
GTACTATTAGTCTTATTCAAAGACTTGAAGAGATCCAGAAATCATtcttg
aaacaaataaaaggaACACACCAAAATTATTGGGAAAGTC
Run BLAST on NCBI

transcript from alignment at scaffold_238:89578..89817

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054044 ID=TCONS_00054044|Name=TCONS_00054044|organism=Clytia hemisphaerica|type=transcript|length=240bp|location=Sequence derived from alignment at scaffold_238:89578..89817 (Clytia hemisphaerica)
GACTTTCCCAATAATTTTGGTGTGTtccttttatttgtttcaagaATGAT
TTCTGGATCTCTTCAAGTCTTTGAATAAGACTAATAGTACTGGGGCTCTA
TAACGCTGAGCAATATTCCAGTATAGGGATCACAAGTGATTTATAGAGAT
TGATCATGGTATGTGTAGAGCGGGAAGTGAAGGTACGTAATATCCAAGAA
ATGatgtttttggctttttcaattATTGATTCAATTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034113XLOC_034113Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054044-exon-scaffold_238-1491911889:89578..89817TCONS_00054044-exon-scaffold_238-1491911889:89578..89817Clytia hemisphaericaexon
TCONS_00054044-exon-scaffold_238-1510915933:89578..89817TCONS_00054044-exon-scaffold_238-1510915933:89578..89817Clytia hemisphaericaexon
TCONS_00054044-exon-scaffold_238-1575043694:89578..89817TCONS_00054044-exon-scaffold_238-1575043694:89578..89817Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_238supercontigscaffold_238:89578..89817 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.29613	10.5252	19.3496	11.9561	18.1943	14.3774	21.7908	25.9822	9.85331	12.1676	10.9351	11.3815	7.17833	11.8034	6.54787	9.86576	2.02563	6.22863	16.2542	8.00419	13.9142	7.63521	8.25031	4.68795	13.5197	12.9279	8.63324	11.8461	1.99663	8.13701
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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