TCONS_00054039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054039
Unique NameTCONS_00054039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054039 ID=TCONS_00054039|Name=TCONS_00054039|organism=Clytia hemisphaerica|type=transcript|length=4436bp
CTCTCTGCTGATCCATTTCTTCCTTCAGGAATTATGGATTGAATGAAGAT
TGTGGTGTGGATCAAAAGATTCTTGCCAGAGCGGTACGCTCAAACAAATC
CAAAAGTatccaaaaaaTTAGTAGTGATAAAGATATTTTTAGTGGTAAAG
ATTTATGACAAATCAAGTCATGCCCCGAAATGTGGAGCGAACCAGATCGA
CGGGGCCATCAGAGGTCAGCTTGGTTATCAAGTATTTACTGTTTGCACTA
AATGTTCTCTTTTGGATCGTTGGGCTTGTTATGATTTTGATTGGTGTTTA
CGCCAAAACACAGAAATCACTTGGGGAAATCGGTAATACATTACCATGGT
ACATGGATCCTGCTAACCTGTTCATTATCATTGGATCTATAGTGTTCTTC
TTAGCTTTCGTGGGTTGTATTGGTTCACTGAGAGAAAACGTTTGTTTATT
GAGAACGtttGAATACACTATTGATGTGTTATTGTTATTGGAGGTTGCCA
TAGCAGTATATGTTTATGTTGATCGAGAGAAGGTCAAGAAAAATGTAGAA
GACGTTTTGAAGGACACTATTTCGAACTACAGAGATGATCCCGATTTGCA
ATCCATTATGGATTGGGTTCAAATGGAGATGCAATGTTGTGGAGTAGCTG
GACCTGAAGATTGGGAAGGGAATATCTACTTCAATTGTACCAATGACTTA
AACAAGTCTGGTGAAAAGTGTAGTGTACCACACTCCTGCTGCAAAGATTA
CAAGACAGAATTGAATGCGCAATGTGCTTACGGTATTCGAAAGCCAGAAG
TGAGCGATGTCGAGCGAAGCCAAGTAATCTATACTGATGGTTGTTTGCAA
AAGACCTTTGACAAGTTTTTGAACCAAGATAACTTGATCCTCTTGGTATG
CGTTGGAGGAGCTATGGTCTTACTTCAGttgGTCACTACAGGTTTAGCAC
ATCACTTGGTTGATGGTATCAGACGACAAAAATCGAAATGGAACCAACCT
AATTTCCGTGGGAACCaaaacccAGGGTACAGATAGATTTAAAACCCATG
GCCATCAATTCTATGATCACTGATGGTTTGTGAATGAGACTggattgctg
aaaatattttgaatgtgATCTTGTCATGTGTAAAGTCTTCAATTATGAAA
CTAAAATCAAATTTACATAATCCGATCCGATCCGAAACTAAATTAAGCCA
TTCTTTTggtttgaaaaaagtcccaaaaaTTAACCAGATGAATGGCCTCG
TCTTTTCTGGATCGGGATAAAAAAGTCTTTTCCAAAAAGTATATGTGATC
AGATTCTAAAGAGGTAAATCATCATATAAAAATTATACTCGCCAAAGCTA
AGAAAAAACGAGCTGAATCAACAAAATATTAGATTCAGGTGATCTTAAAA
actataaaaactagtcttgatTCGGGCTTAGTGTTACAATCTGTGTTCGT
ACTTTTGGGAGAGACTTTTCACAGTACGAGAGAAATACGAAAACGCGATA
TAGCGTTTGAGTTCCTTCCAAAAGCGTACCATGTATATATTGTACTGTTA
TGTACCTTGCTTTTTTAATAATATGTAGAGGTTTGTGTGTATGAGAGAGT
GTAATCCGAATATTTAGGGCGGTGTTAATGCCCTTTCATAGAGTTTTTGA
TAATTATCTTTTAACCAATCTAGGCTAACGAAAGTATTAGATTTTCCTGC
TTTATTTCGAAATCCTGACTTACACTGTAGGGTATTTGCATCTGAGTGAT
AATTCTTATCTTCCGCATTGAGTTGGTTGTAGGTTCTATCTCTGTAAGAA
AAGATTCTTTGAGGCCAGAAACTTTAGAACAATTGTAAGAACATTCTAGG
GCTTTGCCTGATTTAGGCTACGATTTaattaaaccaaaaaataaATCGGA
GAAATTACACCAAAATTCTCACAAAgtgctaaaaataagaacaaatttag
aacacttttaggcttaaaacccaagaagacccaaaaaaataacattctta
taaaaaacgcgaTTTACGAAATTTGAAATCAGAATGCACTTTAGATACTA
AAATTCTCTCCCtctatttcctttttttctttagtAAGCTCTATTTGAAG
ATTACCCTCTATATTACATTTCGACGGAACGAAAAAACGTATTATATGTT
GTGGATTGGATTTCAGTTAGTGCTTGGTTTTCATCTTATTTGAGAGGCAA
TTTTATACATTATTGACTCTAATCAAGCAGCTCAAGTTCCAGTTCTTTct
ctttcttaaaataaaaaaacactttttgataaggtcatataaatattaaa
aactgtagAGTAAAAGAGGATATGTAAAAATTGAACTGGGTCATAGActt
gaaattgttaaaaaatgtatttttatttGATGGAGTAAATCGCCTTATTG
CCGCAATTATGTTATTcactggaaaaaaaaaactttttaagagaTGTGTG
ACCTGACTCAGATGCCCCTCATATGTCAGAGATTTTTTTGATATACTATA
ACGTTTATATGATCGTATTAAAAAAATCTCTCcttgttcttttattttct
gTTATTAAAATCATATGATTTACTTTCGATAGGTTTTTTTGACAATGTTG
TAAGCAACTTCTCTGCTTCCAAAGCTCTCGTTGTGAAACTGGAGATTTtc
ctggtttaaaaaaaaacaaagaaggaATATTTAAAACTTTGGTGAGAGAA
GAGAAAGTTACATGCTTTGGTTCCAGTTGCTTATTTTTTGAGGAGAAGAA
CCCAAATTATGATTCTTTTGTTGTTGTAAGGGTTTGGATTATGGAATTTG
CAATGTTGTTTCGACATTTCTGTTAGTGTGTTTGGGAAAAAAGGGAACTC
GTTTAATATAGAGTAAAATCCTCAACACTTATTATTTTGCTGGAGTTTAA
CAATATTAAAATGAGACAATTTCTAAGCTCAATCAATAGATAATTTAATT
AATTCCAAAGGTAATTTAAGTGGGATTTCGAAGGGAAAGTTATAGATAAT
ACTGGTTATTTTCAGTCTAgtcattttcagcctgaaatatcTCAATTTAG
AACAATCGGGACTGAGCTAGAAATTGCCGACTCTCATAAAAATGTGCACG
TATTCATAGTCCGTTCATTTTCATTTGCATAATTGTCAAGGACTTTCAat
tgcaaaacaaaaaattctttcaaatatcaaaaacaatGAGAATTGAGTAT
CTATAAAAAACTGTTATCTAAGTGATAGTGAACAGGCTATATTGTCTACA
TAAGTTTATGTATCTTTCATATAACCATCTGCGTAGTTATCTTGCATAAT
GTGTGTGCGAAATATTGCCTTGGATAAAGTGTATTTTTTTAttaccgtcg
ttttgtataagatttccatctccgcactaagattcctttgcttCTTTTCT
ATTGGAAAAAGAAGCAAAGGACTTCGGGTAGTATGAAATATGCTTCagaa
agttaggcagtttcgtgagtaaattttttccgtacctttagaaacGAACC
CTTTCCAATCTCTTGCCGGTTATCCCAGaaaaaatagcggaaagattccg
gaaaagtgacaagaatcttagtgcagaaatgggaatcttattcAAAACGA
CGGTACTCATTTTCCCCTTAAtcctcatttaaaaaaaaggttagaTTGCC
GTATGAATGACCAGTATGttgaccttaaacttgttattCGAAAGGAAGGT
TAAGTATAGGTCATGACTTGAAAACAGATATTATCTACTATTATTTTTCA
cctttgttttatattttggcATGTTTTTAGAGTGTTGCTCTTGCCGTTGG
GTGGTTGGCTTATGcggttaaattttcatttgtttttaattttaattatc
tTGCAAAGTTTAATTTAAGAAATGTCTGTTCTTACATTAGAAGCTGAACA
GTTTTCTTTTGCATGAGAATAACCCAGTTttctttatttcaatttttcga
tctTCTTCATTCATATTCATGTaaataaaattagattttttggcACTATG
ATTAATTTAATTATCACagtgtgttttttttgtttattaatGAAGAATTT
TACCACAAAATTTGTAATTCATAATTAACCAAATTTGTTTCCATAGTTCA
CTTTTTGTTCTATGCACGCGAGCTTTTGGGATTTTCTTCCCTTCAAATCA
TATTACCGTGGCGATTTCAAAATTCGCTGCTCCTTTAACGTTTTTGTTTC
TCGTATTTATTCGTTTTATAGTTCATGATTAttaaaatcatacaaaaata
atgtaaagggaaaatttttatatgtTATATTTGACTTGGAATAATTATTC
GTATGATATAGtaattttttgattcaaataaaaaagatatgtATGTTCGT
GTAAAAAACTGTAGTTCTTGAAGTTTGATCATTTTCCTTCTAGGCTAAAA
GGCTAAGAGGGCTACAAGGCTTCTAGGCTACAAGgc
Run BLAST on NCBI

transcript from alignment at scaffold_238:77069..89038-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054039 ID=TCONS_00054039|Name=TCONS_00054039|organism=Clytia hemisphaerica|type=transcript|length=11970bp|location=Sequence derived from alignment at scaffold_238:77069..89038- (Clytia hemisphaerica)
CTCTCTGCTGATCCATTTCTTCCTTCAGGAATTATGGATTGAATGAAGAT
TGTGGTGTGGATCAAAAGATTCTTGCCAGAGCGGTACGCTCAAACAAATC
CAAAAGTATCCAAAAGTAAGTAAGTACTGTTCAAAATTGTCAAAAGATGT
CAATAATTTTTGATCTAGGGAAGTTGGAAATTTGTTCTAGTACTTTTTTT
TGCTCAGTTTAAAGACCTTTCATGGTATGGAGGTCTCATTTGATTTTGAA
GACCCACCTAAAATCATGATTTTTTGGCCTTAGAATTTTGTCTGGAAACA
CAAGAACTCAAATTACACAAAACTGTGGGTTTTCAAGCTTGGCAACATTT
AAATTCAGAATCAGCACCCTCATTAATTAAGAAACTTAGCAAAAAGTAGT
GGGCACAGCCATTTTGAAAAAAAGTGAAATGTTTCATGGGGGCTGTTGGC
CATAGACAGTTAAGTTAGAAGAGAGCATTTATATCATGGTGAAGAGTTGT
CTTGGGGGCGCTATAGGATACGGAAGCCCATTAGTGCCATTTAGATTTCC
CTTTAATTTTTTAACTACAAAACTAAAAAACTAACAACAAAAATAAAAAA
TTGACGACGAAAATAAAAAACTGATGACGAAAATAAAAATTTGACGGTGG
AACTATTTGGTTGAAGTATTTTCAGGCGTATGCCCAATGTGAACCATTTT
TTTTGGACAACATACTGACATATATAGCATAAGGAATCCATACATATCGA
TATATACAACCATGGTGTCCATACTATATCTCATACTTACGTAAAGTAGG
GTACACTACACGCGTCAACAGGTCAACAGTAGTCAAGCACAAGGTAGCCT
ACTACTGAGTCTACAGGCTATCATCTCTTAATAATTGGGTTTTATCTACA
CACACTATTCCAAGACCCTAATCAATAATTTATGACGTCAATTTTTATTT
CGAGATTTGTCGTCGATTTTTTTGACAACAAAAAATGAGCAATTCCTTTT
TTTAACTTTTTTTTCATTATAATGATAATGGAGAATTTGGAAGTTACGTA
TCGTTATTTCGATGACGAAACGAATTAAGATTTTTTTTCATTATCGTCGT
CAATTTTTCATTTTCGTCGTTAGTTTTTTAGTCTTGTCGTTAGAAAGTTA
AAGGGAAATCTAAATGGCACTAATTGGCTTCCGTAATAAGACGAAATAAA
TTTTTTTTGTATTTGAAGATATTTTGCAGTGCTTTGTTGACAATCCAAAC
GTTTCAAAAGTTTGCCAACATTAGATTTCTTTCATTTTTAGAGTGCACTT
TTGCTTTTTGTGTGTATTTTCTAGAAATTTAGATTAAAAAATGGTCTCTT
GAAGGTAAAAGATCAGACCATATAAAAAACGATTTTGTCCCTTGACTGAT
GGACTTCTCTACGTTTTGAGGTGCTCCACAGTTTTTTTCCATTTTTGTAC
AAAAATTGCCACTTCAGAGAAGTCAAGTTTGACATAATGATATGGCATTT
TACAAAGAAAAGGGGAAGCACACAGGCTTTTTTTAATCCTCAGCATCTTT
TGAGACTTGGATAATCACTGACAAGATTTTTTTTATTGCTTTTAGGACTC
AGCAAAGGAAAGCTACTTTTTAGTATACTGTCATGTTAGCTTAACCCCAT
TTATAAAAACAAGGTTTTTTTGAAATTGATAGAACCAAGGGCTAGGGGAG
GAAATTTATGTTATATCACTCTGAATCACTATTTATCTGATTAGCCACCA
TATCTACTCAAAAATTGATGTCAAACAAGTTCGGAACTTATAAAATAAAA
GTTTGGATACTCCAATATAAGATGTCTTTATGTTTTTTTATGCTCTTATG
CCAAAGAATACCATAGGTTCTAGGTTCCACAGATTGTATGAGCCTTCCAG
GTCATACACATTTTTGTTTTTCATAGTATATCAATAAGGCAGGTAGTGCA
TTCTACCCAGCTTCCACGCAGCATAGCAGATGCTTGAACCTTTAATTTTA
ATATGGAGTTCCAAGCAAGGTTGAAATGTTTTTTTTTTGCTGTAGTGCAA
ATCACAGTACCCCTGGGTTTGGCTAATCTTGGAATTCTGACCTTCAATCA
AAATGAATTTTTTGTAATTTTAGAATTAGTAGTGATAAAGATATTTTTAG
TGGTAAAGATTTATGACAAATCAAGTCATGCCCCGAAATGTGGAGCGAAC
CAGATCGACGGGGCCATCAGAGGTCAGCTTGGTTATCAAGTATTTACTGT
TTGCACTAAATGTTCTCTTTTGGGTAAGAACTTTTTTTAAATATATATAT
TTTTACTAAAGTAAAATCCCATGGTGCCAACGTCCTTACAACTTCGAAAA
TCTAGTCAATTCCACAACTTATTCTTATGAGTTTGCTGAAAAGAAAATGT
TACACCTAAACAAAATAATTTAATAACTAATTGTTTTTTTTTATATCTAG
ATCGTTGGGCTTGTTATGATTTTGATTGGTGTTTACGCCAAAACACAGAA
ATCACTTGGGGAAATCGGTAATACATTACCATGGTACATGGATCCTGCTA
ACCTGTTCATTATCATTGGATCTATAGTGTTCTTCTTAGCTTTCGTGGGT
TGTATTGGTTCACTGAGAGAAAACGTTTGTTTATTGAGAACGGTAAGCTT
TCTTATGTTATGGCTAGTAAATGTTTTGCCACTAGCTTTAGTTCAGACAC
AAGAATATTTTTCTAGATCGATTCAAAACTAAGTATTGACCATGAATAAT
TTTGCTTAAATTCTTACTTTCATATTTCAAAAAGTTTATAACAGACAATG
TGCAAGGGCCAAGGCAAAGTAGTTCTTTCTGAATTCTCTCAAATATCTAT
ATCTTGGAAGGGAATAGTTTTTCAAAATCGGTTTTGTGTTCCTATTAAAA
GTTATTGTTGCTTGACGTACTGCATGGGAGCAGTTATTTCATTTTGTTTG
TAGGATAATTCTAAGATTTATCCGTTTTCTGTTTTGGTGACTACAAAAAA
CGTACTTTTCAAACACTGAAACTGAATTGATGATTTTTCTTTATTTTTCA
TGATACATTGTGGTAAGGAATTAAATTATTTAGTAAGTCCTTCTCAAAAT
ATTGGTTTCAAAATGGGGGGTAACATTGCTATCATGTTTCAGTTTCGTTT
CGTTTTTATAAATTAAAGTAAATGAAATCAAAATGGGTTTCTTTTTTTCT
CTTTTTTAGTTTGAATACACTATTGATGTGTTATTGTTATTGGAGGTTGC
CATAGCAGTATATGTTTATGTTGATCGAGAGAAGGTAAAATCTTTTGGGC
AATCAGGAAACATCAACTCGGCCATGAAATAGAAAATCTCAATTCTATTA
AAGGTCAATGCCATAAAACCTGTATTTCTACTTCAGACTATCATTTCTAT
TTTCATATTTTGACTCCATAATGTTTAAAAGTAGAACTAAGCTTGCTTAG
AGCGTGCCAGGAAGCTGCCTTTGATGATGCGAGAAAAAGCATTGCTCAAA
CAAGTTTGTTTTAACTGAAAAAATAAGATTATTGTAATAAATAAGACATT
TTTAAAAAGCAGGAGACGAAAAAAAACAATACCTAATGACGCTGAGAAAG
ATAGAAGATAAAAATACCCCTGAAGCTCATTGGTAGTACCTCCTTGAATC
CTAATATACTCTCGGGTACCTAGTAGCCATCCCCCGCTAATTAATTTTTC
ATCCAGGGCATTCTTATTCCAACCCCCTGCTTATTATATTAATTTTTGGG
GAAATGTTTTTGAAAGTTCCTCTCTTTTTTTCTAATTCTGCTATTAGCCT
CCTTTTCAAAATGTTTCCACCCGGGACATTTTCATTCCAACCCCCCCCCC
CCCCCTCCCCTCTTTTTGGTTTTTTCCCCCCCCCCCCCCCGCTTATTAAG
TTTTGAGAGTTTTCACCCCCCGTCGATTTTTGAAGCTCAATCGACTCAAA
TTTATAACAGTTTGTAGAAATACCTTCATCATCTTGCGAGCTATCAACGT
CTCCTTTTTTATTCGATTGAATTTTAACAGGTCAAGAAAAATGTAGAAGA
CGTTTTGAAGGACACTATTTCGAACTACAGAGATGATCCCGATTTGCAAT
CCATTATGGATTGGGTTCAAATGGAGGTATGTTTCTGTTTTGCATTTATC
ATTTCTAACATGGAATGATTAGTTTTTCGCACCTGGTTTTCATTCATTTT
TAAATTCAATGATTTTTTATTGTTGATAATTCTTAACAATCAATTCTACA
ATTCAAATGGGCTCTTCCGGAAATTTTTTGTACATGGGGAGGGGGTGGAG
GGTACATTGGATATTTTGTCTGTGAAAAATTTGTAGTGAAAAATCTTCAA
AATTTGCCTTGTTTTTTTAGGCAAATTTGCTCTGCTTAGGAGTAATTTTG
AATGTCTGGGAGTCAACTGATGCTTGTCTGGGGGTGAGATCTGTTGTCTG
GGGGGGGGGTCAAAATTCACAATGTCCGGGGGTAGATTTTCAAAAAATTA
TTATATCCTCCACAACCCTTCCCCCATGTACAAAAATTTTCTGGAAAGCC
CAATGCTTTAAAATGGTTTTTTTCTTCCGTTAGTAAATTATACTGAAGTC
TTTTGCAGTCCATATAAAATACAAAAATAGAACATGTCATATGATAATGC
CGCGGGATTATTATGGGATAACTATTACTTCGTTCGTTCTAAAAACTAAT
TGATGCCTGTTTTAAATGGGATTAGGTCAATTTTGATGAGGTGTAGAGGC
TTCGTTTTATTCGTGAAACTGTGCAAACTTTGCCTTAATTTTGTGTTTTT
TTTATGTATTTCTTCGTTACAAAGACTATCACATAAATCTGTATCAATCA
ATAAGCTTCGTCAGCATACACGTTTTTTTTTTTAAGAAACTAGTTTTACC
AAGCAGCCTCAATGTTTCTTAAGAAATCGGCCTTTTGAGCCTTAAATGTT
TCTTACATGTTTCTAAACTTTTTGACATAATTAGCCTTGATTGGAAGGTT
CTTATAAAAAACCGAATTGAAAAATGTTATTTTCTCATTCTCAGCCTCAG
CATGTTTCTTAGATGTTTCTTGGTTTTTAGGCATTCTGAGCCTCATGTTT
CTTAAAAGTGTGTTTCTTAAAAAAAAAAGACGTGTATATTAATTTAAAAA
ACACATTTATTTACTGAGTAAAATACGAAGCTTTTCGTAAAATAAACTTA
CACTCATTATCGAATACAGAATTTTAAACTAAAAATCAAAAACATCATCA
TATGTACACTATTTACAAATTTTGGATGAATACATGAATAAACAACAATG
TCGTAAAATTTTAATGACCCTTTCAGGGAAAATAATTAACTTGTAAATAA
TCACATTCTCANGTAAAATTTTAATGGCCCTTTCAGGGAAAATAATTAAC
TTGTAAATAATCTATCACATTCTCACCTTTAGATGCAATGTTGTGGAGTA
GCTGGACCTGAAGATTGGGAAGGGAATATCTACTTCAATTGTACCAATGA
CTTAAACAAGTCTGGTGAAAAGTGTAGTGTACCACACTCCTGCTGCAAAG
ATGTATGATAATCTTATTATTATTATTTCCATTAAAGGATAAACTACGAT
GAAGTTTTAATCACATTCTATTGAGTCCCTTTTTTTAAAAGAAAATCTTA
GTTTGCCAAAACGGAGAAAATGGAAAGTGGGAGCTGAGAGCAGGTGTTGC
GCTCTAATTCAGCCTTCAATCTTTCATCTCTAGCGCCAATAGAAAAGGGA
ATAGACTCAATCAATAGCTTGAGCGCCAATCGTCAGGTTTTTTCGAACAG
ATCTTTTTACAAACTGCAATCTTCTTTCTCTTTATAGTACAAGACAGAAT
TGAATGCGCAATGTGCTTACGGTATTCGAAAGCCAGAAGTGGTAAGATTC
ACTATTAAATGTTTCAATGAAGAAATTTCGATCGCTAGATATTGAAAAAT
AGCAATGCCCTAAAAAAACCATTTAGTGATATGTTCGTGTGGTAAAAAAT
AGATAATAAGGCGAAAATTTGCGCATTTTTACAATCTTTGGTCACAATAT
ACCACAAATGAGACCAATGGCATGGTATGGCGTCTATTTTTGTACTTTCA
AAGTGTTTTAAAACCCATTTTGCCCTAATGCGGCATTTGGTATTTTAAAT
TCCCCAGTCCTTAGAAGGGTCGGCTACTAAAATCTAATTCCGTGTATCGG
ATAATTTGTTGTTTTTTTCGGCTAGAATTTAAAGATTATTTTCTCCGGTC
TTATATGAAAAAAAAGGGATTTCAAAATAGTTGCTGAGATAAGGACTTAT
GCTAATAGACCTTTCCCGAAACCTATCACGTGATCAATTTTATGACGTCA
TTTCAAAATTCAACCAAATTAAAAGCATTTCTCATTGCTTCACAATAAAG
GTTTACATGAAAACGAGGCGGGGTATGGAAAATGATCGTAAGTTTACAAA
ATAAGAGGAATTTTGTAGAAAACGAAAGTGAAACTTTTGATCTGGTAGAC
CAAATGAAACAAAATTTTCAGGGATTTCTTATTAGATCAAAACAAACTGA
ACTGTGATTGTCAAAATCTTCATTTTACAGAAGTTAATTTTTAAGTGGGT
TTCGTCAAAGGTCTATTTTGGTTGTTTTAAGGTTGTGATATGGAAGCGAT
GGTGGAGGGGGTTGTTTACTAAATGTGCGACATGGATATTTAGGCGTCAC
TGTACCAATTTGATAATTTTTCCGAACTGATGAAATAAACTTTTCTCTTT
TTTGTCTTCTGATTTTGAAGTTGTGTTATCATTTCTTAGAGCGATGTCGA
GCGAAGCCAAGTAATCTATACTGATGGTTGTTTGCAAAAGACCTTTGACA
AGTTTTTGAACCAAGATAACTTGATCCTCTTGGTATGCGTTGGAGGAGCT
ATGGTCTTACTTCAGGTTAGTATGACTTCCATCATTGTCTATTGAATATT
ATTTTTCGGCCAGGCTCTTAAACAAGTCTTATTCTTTACTCCAAGGCTTG
TATTAAAAATAAATAACATTAAATGAAACTAAGTCAAAAGTCGACTAAAC
TTGTCACCTTTAAGATTTATTGCTCCAATTTTACGTCATAATTTCCCACC
GTTAAGAGATCTTCTGGTCCAGAGATATGTTTACTTTTTAACTGCGTGCA
AAAATAATTTTAAAGGCCTTGGATGTTGAAAGGTTGTGAACTTTCGAATT
CAACGGCTCATCTCAAGTTACGCATCGAGTCGAGTCTTTTCGAGTATTTT
CTCACATCTTTAAAAAAAGTCTGTCTAACCTATTAAAAACGAGTACATCT
TTTTTTATAAGAATCAGTACATTTTGACTATTTTATTCATCAATACTTCC
TTCGAAAGTAGCTCCTAATGGCTCGAAATCTCAAAAGGGTCTAACATTAA
TACTAATGGCTAGGAAAACAAATTAAAGACAGGTATTTTTCTAACCACAT
TCTAACCACATTGAATTTGAGAGTCTTTGGGGGGTGCTTTAGGCCCTCAA
GGGGGTCCAGAGCAACGCCCAAGTAATACGTGAGGCCCCCCCCCAGCGGA
CCTTCAATTCACGCAATCACGCAATTTTTTTTCGAAATTCACGCATTCAC
GCAAATTTTCCTCGAGTTTCACGCAATAACCCGACTTTTCAGGAAATCGG
AAAATTTTCGGGAAAAATCGGGGAAACATTGGAAAATCGGGAAAATGATC
GGTGGAAAATAGGGAAAATTCACGTATTCACGCACAAAATAGCCCAGATT
CACGTATTCACGCAATCAAAAAGTGAATTTTCACGTTCACGCAAGTTTTT
TCAATTCACGCATTCACGCATTTTTTTTCCAATTTTCACACATTCATGCA
ACCGAAAATGCCCATTCATGCATTCACGCAAACCGCTGGGGGGGGGGCCA
TACGTAGATAATATTAGTTTTTTTTTTAACAACGTAAAAGGTAGATTTTG
ATAGGAAATATGGATTGTGAGTTATGATTTTCAAAATTTTTAAACTCTTT
TTTTGGCTGATATATGGACATAAAAAAGTGCCTAGAAAAAATGCCTGAAA
GAACCATTTATTTCTATCAAACCAATTTTTGAAATATTGATTTGTTTTCT
TTTTCAGTTGGTCACTACAGGTTTAGCACATCACTTGGTTGATGGTATCA
GACGACAAAAATCGAAATGGAACCAACCTAATTTCCGTGGGAACCGTGAG
TCACTAATGTTTTAAAACACACACGTTCACGTTATTCACGTATTTTATCA
CGCACTCGCTTCCTTTATACAGATTTCACGTAGAGGTCGGAAGCAAAAAA
GGAAAATAGGGAACAGTTTTTTTATTTATTGGTGACTTGTTTTTTTGTTT
TCAAATTTTATCCATTGATCACTGAATGTTGACTGAGGACATTCAATTCG
GAGTTTTTCGAAACCATAGATTTGTACAAGTTTTTTTTTTCTACGCACAT
AAAGCATGCAATTTTTTACATAACTTTTGTAGACTTTTTTTTTTATCTGA
AAATAAATTTATAAGTCAATAATTAATTTTTTGTCTTTTTATTTTTTTAG
AAAACCCAGGGTACAGATAGATTTAAAACCCATGGCCATCAATTCTATGA
TCACTGATGGTTTGTGAATGAGACTGGATTGCTGAAAATATTTTGAATGT
GATCTTGTCATGTGTAAAGTCTTCAATTATGAAACTAAAATCAAATTTAC
ATAATCCGATCCGATCCGAAACTAAATTAAGCCATTCTTTTGGTTTGAAA
AAAGTCCCAAAAATTAACCAGATGAATGGCCTCGTCTTTTCTGGATCGGG
ATAAAAAAGTCTTTTCCAAAAAGTATATGTGATCAGATTCTAAAGAGGTA
AATCATCATATAAAAATTATACTCGCCAAAGCTAAGAAAAAACGAGCTGA
ATCAACAAAATATTAGATTCAGGTGATCTTAAAAACTATAAAAACTAGTC
TTGATTCGGGCTTAGTGTTACAATCTGTGTTCGTACTTTTGGGAGAGACT
TTTCACAGTACGAGAGAAATACGAAAACGCGATATAGCGTTTGAGTTCCT
TCCAAAAGCGTACCATGTATATATTGTACTGTTATGTACCTTGCTTTTTT
AATAATATGTAGAGGTTTGTGTGTATGAGAGAGTGTAATCCGAATATTTA
GGGCGGTGTTAATGCCCTTTCATAGAGTTTTTGATAATTATCTTTTAACC
AATCTAGGCTAACGAAAGTATTAGATTTTCCTGCTTTATTTCGAAATCCT
GACTTACACTGTAGGGTATTTGCATCTGAGTGATAATTCTTATCTTCCGC
ATTGAGTTGGTTGTAGGTTCTATCTCTGTAAGAAAAGATTCTTTGAGGCC
AGAAACTTTAGAACAATTGTAAGAACATTCTAGGGCTTTGCCTGATTTAG
GCTACGATTTAATTAAACCAAAAAATAAATCGGAGAAATTACACCAAAAT
TCTCACAAAGTGCTAAAAATAAGAACAAATTTAGAACACTTTTAGGCTTA
AAACCCAAGAAGACCCAAAAAAATAACATTCTTATAAAAAACGCGATTTA
CGAAATTTGAAATCAGAATGCACTTTAGATACTAAAATTCTCTCCCTCTA
TTTCCTTTTTTTCTTTAGTAAGCTCTATTTGAAGATTACCCTCTATATTA
CATTTCGACGGAACGAAAAAACGTATTATATGTTGTGGATTGGATTTCAG
TTAGTGCTTGGTTTTCATCTTATTTGAGAGGCAATTTTATACATTATTGA
CTCTAATCAAGCAGCTCAAGTTCCAGTTCTTTCTCTTTCTTAAAATAAAA
AAACACTTTTTGATAAGGTCATATAAATATTAAAAACTGTAGAGTAAAAG
AGGATATGTAAAAATTGAACTGGGTCATAGACTTGAAATTGTTAAAAAAT
GTATTTTTATTTGATGGAGTAAATCGCCTTATTGCCGCAATTATGTTATT
CACTGGAAAAAAAAAACTTTTTAAGAGATGTGTGACCTGACTCAGATGCC
CCTCATATGTCAGAGATTTTTTTGATATACTATAACGTTTATATGATCGT
ATTAAAAAAATCTCTCCTTGTTCTTTTATTTTCTGTTATTAAAATCATAT
GATTTACTTTCGATAGGTTTTTTTGACAATGTTGTAAGCAACTTCTCTGC
TTCCAAAGCTCTCGTTGTGAAACTGGAGATTTTCCTGGTTTAAAAAAAAA
CAAAGAAGGAATATTTAAAACTTTGGTGAGAGAAGAGAAAGTTACATGCT
TTGGTTCCAGTTGCTTATTTTTTGAGGAGAAGAACCCAAATTATGATTCT
TTTGTTGTTGTAAGGGTTTGGATTATGGAATTTGCAATGTTGTTTCGACA
TTTCTGTTAGTGTGTTTGGGAAAAAAGGGAACTCGTTTAATATAGAGTAA
AATCCTCAACACTTATTATTTTGCTGGAGTTTAACAATATTAAAATGAGA
CAATTTCTAAGCTCAATCAATAGATAATTTAATTAATTCCAAAGGTAATT
TAAGTGGGATTTCGAAGGGAAAGTTATAGATAATACTGGTTATTTTCAGT
CTAGTCATTTTCAGCCTGAAATATCTCAATTTAGAACAATCGGGACTGAG
CTAGAAATTGCCGACTCTCATAAAAATGTGCACGTATTCATAGTCCGTTC
ATTTTCATTTGCATAATTGTCAAGGACTTTCAATTGCAAAACAAAAAATT
CTTTCAAATATCAAAAACAATGAGAATTGAGTATCTATAAAAAACTGTTA
TCTAAGTGATAGTGAACAGGCTATATTGTCTACATAAGTTTATGTATCTT
TCATATAACCATCTGCGTAGTTATCTTGCATAATGTGTGTGCGAAATATT
GCCTTGGATAAAGTGTATTTTTTTATTACCGTCGTTTTGTATAAGATTTC
CATCTCCGCACTAAGATTCCTTTGCTTCTTTTCTATTGGAAAAAGAAGCA
AAGGACTTCGGGTAGTATGAAATATGCTTCAGAAAGTTAGGCAGTTTCGT
GAGTAAATTTTTTCCGTACCTTTAGAAACGAACCCTTTCCAATCTCTTGC
CGGTTATCCCAGAAAAAATAGCGGAAAGATTCCGGAAAAGTGACAAGAAT
CTTAGTGCAGAAATGGGAATCTTATTCAAAACGACGGTACTCATTTTCCC
CTTAATCCTCATTTAAAAAAAAGGTTAGATTGCCGTATGAATGACCAGTA
TGTTGACCTTAAACTTGTTATTCGAAAGGAAGGTTAAGTATAGGTCATGA
CTTGAAAACAGATATTATCTACTATTATTTTTCACCTTTGTTTTATATTT
TGGCATGTTTTTAGAGTGTTGCTCTTGCCGTTGGGTGGTTGGCTTATGCG
GTTAAATTTTCATTTGTTTTTAATTTTAATTATCTTGCAAAGTTTAATTT
AAGAAATGTCTGTTCTTACATTAGAAGCTGAACAGTTTTCTTTTGCATGA
GAATAACCCAGTTTTCTTTATTTCAATTTTTCGATCTTCTTCATTCATAT
TCATGTAAATAAAATTAGATTTTTTGGCACTATGATTAATTTAATTATCA
CAGTGTGTTTTTTTTGTTTATTAATGAAGAATTTTACCACAAAATTTGTA
ATTCATAATTAACCAAATTTGTTTCCATAGTTCACTTTTTGTTCTATGCA
CGCGAGCTTTTGGGATTTTCTTCCCTTCAAATCATATTACCGTGGCGATT
TCAAAATTCGCTGCTCCTTTAACGTTTTTGTTTCTCGTATTTATTCGTTT
TATAGTTCATGATTATTAAAATCATACAAAAATAATGTAAAGGGAAAATT
TTTATATGTTATATTTGACTTGGAATAATTATTCGTATGATATAGTAATT
TTTTGATTCAAATAAAAAAGATATGTATGTTCGTGTAAAAAACTGTAGTT
CTTGAAGTTTGATCATTTTCCTTCTAGGCTAAAAGGCTAAGAGGGCTACA
AGGCTTCTAGGCTACAAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034111XLOC_034111Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054039-exon-scaffold_238-1575043694:88924..89038TCONS_00054039-exon-scaffold_238-1575043694:88924..89038Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1575043694:86766..86915TCONS_00054039-exon-scaffold_238-1575043694:86766..86915Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1575043694:86397..86588TCONS_00054039-exon-scaffold_238-1575043694:86397..86588Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1575043694:85755..85829TCONS_00054039-exon-scaffold_238-1575043694:85755..85829Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1575043694:84913..85008TCONS_00054039-exon-scaffold_238-1575043694:84913..85008Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1575043694:83487..83606TCONS_00054039-exon-scaffold_238-1575043694:83487..83606Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1575043694:83148..83201TCONS_00054039-exon-scaffold_238-1575043694:83148..83201Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1575043694:82124..82249TCONS_00054039-exon-scaffold_238-1575043694:82124..82249Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1575043694:80844..80931TCONS_00054039-exon-scaffold_238-1575043694:80844..80931Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1575043694:77069..80488TCONS_00054039-exon-scaffold_238-1575043694:77069..80488Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1510915933:88924..89038TCONS_00054039-exon-scaffold_238-1510915933:88924..89038Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1510915933:86766..86915TCONS_00054039-exon-scaffold_238-1510915933:86766..86915Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1510915933:86397..86588TCONS_00054039-exon-scaffold_238-1510915933:86397..86588Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1510915933:85755..85829TCONS_00054039-exon-scaffold_238-1510915933:85755..85829Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1510915933:84913..85008TCONS_00054039-exon-scaffold_238-1510915933:84913..85008Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1510915933:83487..83606TCONS_00054039-exon-scaffold_238-1510915933:83487..83606Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1510915933:83148..83201TCONS_00054039-exon-scaffold_238-1510915933:83148..83201Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1510915933:82124..82249TCONS_00054039-exon-scaffold_238-1510915933:82124..82249Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1510915933:80844..80931TCONS_00054039-exon-scaffold_238-1510915933:80844..80931Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1510915933:77069..80488TCONS_00054039-exon-scaffold_238-1510915933:77069..80488Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1491911889:88924..89038TCONS_00054039-exon-scaffold_238-1491911889:88924..89038Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1491911889:86766..86915TCONS_00054039-exon-scaffold_238-1491911889:86766..86915Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1491911889:86397..86588TCONS_00054039-exon-scaffold_238-1491911889:86397..86588Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1491911889:85755..85829TCONS_00054039-exon-scaffold_238-1491911889:85755..85829Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1491911889:84913..85008TCONS_00054039-exon-scaffold_238-1491911889:84913..85008Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1491911889:83487..83606TCONS_00054039-exon-scaffold_238-1491911889:83487..83606Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1491911889:83148..83201TCONS_00054039-exon-scaffold_238-1491911889:83148..83201Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1491911889:82124..82249TCONS_00054039-exon-scaffold_238-1491911889:82124..82249Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1491911889:80844..80931TCONS_00054039-exon-scaffold_238-1491911889:80844..80931Clytia hemisphaericaexon
TCONS_00054039-exon-scaffold_238-1491911889:77069..80488TCONS_00054039-exon-scaffold_238-1491911889:77069..80488Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_238supercontigscaffold_238:77069..89038 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.8229	9.9936	4.92684	4.44493	17.166	12.585	19.3135	19.3531	10.4175	10.5043	8.11077	7.67831	10.2271	7.97038	8.63667	5.80163	6.45867	9.3052	10.7219	11.2262	26.4393	19.3656	7.95795	14.3421	33.1555	36.5026	31.5566	24.3404	13.7073	15.3991
Blast
[Close]
BLAST of TCONS_00054039 vs. Swiss-Prot (Human)
Match: TSN33 (Tetraspanin-33 OS=Homo sapiens GN=TSPAN33 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.788e-55
Identity = 110/276 (39.86%), Postives = 166/276 (60.14%), Query Frame = 2 
Query:  170 MPRNVERTRSTGP--SEVSLVIKYLLFALNVLFWIVGLVMILIGVYAKTQKSLGEIGNTLPWYMDPANLFIIIGSIVFFLAFVGCIGSLRENVCLLRTFEYTIDVLLLLEVAIAVYVYVDREKVKKNVEDVLKDTISNYRDDPDLQSIMDWVQMEMQCCGVAGPEDWEGNIYFNCTNDLNKSGEKCSVPHSCCKDYKTE--LNAQCAYGIRKPEVSDVERSQVIYTDGCLQKTFDKFLN--QDNLILLVCVGGAMVLLQLVTTGLAHHLVDGIRRQ 979
            M R      ++G   S VS ++KYLLF  N+LFW++ +VM+ +GVYA+  K        L   +DPA L I++G ++F L F GCIGSLREN+CLL+TF   +  + LL++A  +  +V  +K +  V +++ + I +YRDD DLQ+++D+ Q +  CCG    +DW  N+YFNC+ D N S E+CSVP+SCC     +  +N  C  G++  +   +E S+VIYT+GC+    DK +N    NL LL  V   + + QLV   L+  LV+ I+ Q
Sbjct:    1 MARRPRAPAASGEEFSFVSPLVKYLLFFFNMLFWVISMVMVAVGVYARLMKHAEAALACLA--VDPAILLIVVGVLMFLLTFCGCIGSLRENICLLQTFSLCLTAVFLLQLAAGILGFVFSDKARGKVSEIINNAIVHYRDDLDLQNLIDFGQKKFSCCGGISYKDWSQNMYFNCSED-NPSRERCSVPYSCCLPTPDQAVINTMCGQGMQAFDY--LEASKVIYTNGCI----DKLVNWIHSNLFLLGGVALGLAIPQLVGILLSQILVNQIKDQ 267
The following BLAST results are available for this feature:
BLAST of TCONS_00054039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSN334.788e-5539.86Tetraspanin-33 OS=Homo sapiens GN=TSPAN33 PE=1 SV=... [more]
back to top