TCONS_00054036 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00054036
Unique Name	TCONS_00054036
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1568

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_238:14115..20809-

transcript sequence

>TCONS_00054036 ID=TCONS_00054036|Name=TCONS_00054036|organism=Clytia hemisphaerica|type=transcript|length=1568bp
CAGACTGTCAACAAAGTGTTGAAAAACTTTATACTGTAAAACTTCGTGGA
TAATTTAGTTTgtatttctctttctctttcagaaaaatatttatgtGGTT
TGTTTAGTTGTTTGTGGAGTAGCTTATTGTGTAGTGTAAAAAGCCAAATG
TATTATGACTATTGATATGACAGCATCAACAAATAATATTGGTATGGCCA
AAGAGCCAGAAGCTTGTAAACTGTTTATTGGACAAGTACCCAGAACATGG
ACTGAAAAAGAACTGAAACCTATATTCGATCAATATGGTGAAATACATGA
CCTTACTGTGCTTCATGATAAATACACTGGTCAACATAAAGgatgtGCAT
TTTTAACATACTATGAGAAAGAATCAGCCCAGCAAGCACAAAATGAACTT
CATGAAAAAAAGACACTTCCAGGGTGTGGCCATGCAATGCAAGTCAAACC
TGCAGTATCAGAGACGAAAACTGAAGATAGAAAATTATTCATTGGAATGT
TATCCaagaaattaaatgaagaagaccTAAGAGTTATGTTTTCCCCCTTT
GGAACGATAGAAGAACTGACAGTTTTGAAAAATCCTGATGGAACTAGTAA
AgGTTGTTCATTCATCAAATATGCAAACAGATTACAAGCACAAAATGCTA
TTAGAAAGTTGCACGGCTCTCAGACTATGGAGGGATGCTCTTCACCTCTT
GTTGTTAAAATTGCTGATACAGAAAAGGACAAATTGCAAAAACGTATGCA
AGCTATGGCAACTAATTTAGTCGGACTTGGTATGACAATGAGCCAATTTG
GAATGCCTGGAGGCTTAATAAACAATGCATATCCTAATGTAGGACAAAAT
AATGCATATCAACAACTTTTAACACAAATGGCAATGCCAAATACACCTGT
TCCAGCTCAGCTTGTTAGTAATCCTGGATTCGCTAATATGAACAATAACA
CTTTACCAAATGGTGTCAGTGCTGCTCTCGTGGCTGCAATGGCAaaccag
caacaacaacaattaCAAGGACTTACTCAAACACAACAAGCAAACTCTTC
ACTATTCAGTTCTAGTATTGGTCAACAGTTACCTACAAGTAGTTTCACCA
CGTCACAAAGCGCAACAAATCCATTAGCTAATAATGGTTTGTCTGCTCTT
CAAACTAACATATCAGGAGCCAATTCTATTGCTAACCTTGGTGGACTAAA
CAATATGGCTAATCTTGCAACTGCACTTCCACAAGCGTATCAAAATTTAC
AAAGGCAGAATGTCGCACAACCCCAAAAAGAAGGTCCTGATGGTTCAAAT
CTGTTCATTTACCACCTTCCACCTGAATTTACCGATGCTGATCTGATGCA
GACCTTTATGCCATTTGGAAATGTTCTCTCTGCTAAAGTCTTCATTGACA
AACCTACGTTGTTGAGCAAATGTTTTGgttttgtcAGTTTTGACAACCAA
CACAGTGCCAGGCAAGCTATTGAAGCAATGAATGGATTTAGTGTTGGTTC
CAAGCGGTTAAAGGTTCAGTTGAAGCGACCAaaagaccaaaacaaaccaT
ATTAAAAAAACATGCATG

Run BLAST on NCBI

transcript from alignment at scaffold_238:14115..20809-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00054036 ID=TCONS_00054036|Name=TCONS_00054036|organism=Clytia hemisphaerica|type=transcript|length=6695bp|location=Sequence derived from alignment at scaffold_238:14115..20809- (Clytia hemisphaerica)
CAGACTGTCAACAAAGTGTTGAAAAACTTTATACTGTAAAACTTCGTGGA
TAATTTAGTTTGTATTTCTCTTTCTCTTTCAGAAAAATATTTATGTGGTT
TGTTTAGTTGTTTGTGGAGTAGCTTATTGTGTAGTGTAAAAAGCCAAATG
TATTATGACTATTGATATGACAGCATCAACAAATAATATTGGTATGGCCA
AAGAGCCAGAAGCTTGTAAACTGTTTATTGGACAAGTACCCAGAACATGG
ACTGAAAAAGAACTGAAACCTATATTCGATCAATATGGTGAAATACATGA
CCTTACTGTGCTTCATGATAAATACACTGGTCAACATAAAGGTTATTATT
GGAATTACTATATAAAATTTTGGCCAATTTAATCTAATTAATGTGTTGCA
CTTTCAAATTCTGTAATTCTTGTGTTGTTGAATGATATCCTGGCTGGATG
ACAACACTGCCAACGCACTGAATTGCCTTGTGATTTTATCCGGTGCTGAA
TAAAAGTATTTAAATTTCACCAGACAAAATTGTGTTACAGTTTTTTAGGC
CGGCCACACNAGCGTTTGGAAATTTTTCCCGCTTACATCGGAATTATTAG
TCAGGTAAAAAAGTTCAGACTGTCAACAAAGTGTTGAAAAACTTTATACT
GTAAAACTTCGTGGATAATTTAGTTTGTATTTCTCTTTCTCTTTCAGAAA
AATATTTATGTGGTTTGTTTAGTTGTTTGTGGAGTAGCTTATTGTGTAGT
GTAAAAAGCCAAATGTATTATGACTATTGATATGACAGCATCAACAAATA
ATATTGGTATGGCCAAAGAGCCAGAAGCTTGTAAACTGTTTATTGGACAA
GTACCCAGAACATGGACTGAAAAAGAACTGAAACCTATATTCGATCAATA
TGGTGAAATACATGACCTTACTGTGCTTCATGATAAATACACTGGTCAAC
ATAAAGGTTATTATTGGAATTACTATATAAAATTTTGGCCAATTTAATCT
AATTAATGTGTTGCACTTTCAAATTCTGTAATTCTTGTGTTGTTGAATGA
TATCCTGGCTGGATGACAACACTGCCAACGCACTGAATTGCCTTGTGATT
TTATCCGGTGCTGAATAAAAGTATTTAAATTTCACCAGACAAAATTGTGT
TACAGTTTTTTAGGCCGGCCACACCAATCACCACAAATAACTTGTGTTGT
GTCGTCTGACCATCTGATAATTTTTCTTAATTTTCCAATTATTTTGAGTC
AAGAAGTTGCAAAATTGTCGGAATTTTATCCAATTCCATCCCACCCGCAA
TCTTTACATCAATCGCACGTTTCATTGTTTTGGGCCATTCCAGAAAATTT
TTGTTACCCCACGTCAGACGACGTGCATTTTTTAATTTTTTCTAGCCTCA
GAAATTTTTTTTTTTCCAGTGGTGGTCGGAAATTCCGATAAAAATCCATG
TACTTTTGCAAAATGCATCGGAAATTCCACTCTTTTTTGCCTTTTTTTAA
TTCAATTGCCTTGGAAATTCATACATTTTCTTCTCTCANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCTCACCTTGGAAATT
TCGAATTTTGGTGAAAACTTTTGCCCTCGGAAATCCTGTGTCGTCCGCCC
CCCTGTTACAGACAAATTCTGGAATGGCCCTTTACGGAAGAATTTTATTT
ATAAATATAAACAGAGATAATATCCAATCCTTTCCGTGAACGTGTTATTA
TCTCCTTAGTCATAAAACAGAGATACCATATTTCAAAAAAAGAGGGGCTG
TATCGTGATCACATGAAATCCAAGAAAGGGCCACAGTTGACGGACCGTCT
ACATAAACAAGAAGACAGTGGGCCGTTTATTTTCAATTTTCGATAGATTT
GATTTCTGCCTGATTGATAGTTTGAAAATCCATTTTTCCGACGTTATTTT
CACTGACCGAATCTGACCGAATGACTCCATTTTTATTGCCTAAAACGACG
CGAACACAAGTTATTTGCGATTCTGGCCTTACACCAATTCTTGACACCAG
ACTTTTTTGTTACTGTTTGCGCGCTCATTGGATTGATCCACATCCATGTG
CCAGGTTTAGATTGTCCAGAGATAAAAAGTTTCATCCTTCAACACTTGGC
ATTAGGATAAGCCTGGTGCTTCAGTCTGTTGTGTTGGCAGGATTGTCTAT
CATGCAAAATCATTTTGCCAAATTGGTTGCAGTCAGATTGCATAGGAAAA
TATGCAAAACCTATGCAAAGAGAATAATCAGAATATTATTAGCATTAAAG
AAAAGCAACAACCTAAACTCAACTGCTTGACTTTTACCCTTCTTGACAAA
GAAATAATCAGAAAAAAGTGTCACAAGAGCCTTGGGTCTTGAGAACTGAA
AATTGTTCAGTAATTTTATGAATTTCACTGCTGGTTTTTCTTCTTTCATA
TCTATAATTTATTAAATTAAAGTATTTTTTTTTTCAGGATGTGCATTTTT
AACATACTATGAGAAAGAATCAGCCCAGCAAGCACAAAATGAACTTCATG
AAAAAAAGACACTTCCAGGGGTAAGAATTCTGCTCAGGTTACAGTAATAT
TGTCCATTATTTTAAGATTGATAATATTATAAGATATATAATATTAGTTT
GTACACACTTTTGAATCTTGAAAGGTATATACAGTGACAATATTCATTTT
ACTCAAGCAGGTTCTACTCTAACTATATCGACTTTCTTACTTATCTTCTA
GTGTGGCCATGCAATGCAAGTCAAACCTGCAGTATCAGAGACGAAAACTG
AAGATAGAAAATTATTCATTGGAATGTTATCCAAGAAATTAAATGAAGAA
GACCTAAGAGTTATGTTTTCCCCCTTTGGAACGATAGAAGAACTGACAGT
TTTGAAAAATCCTGATGGAACTAGTAAAGGTAAAATTGTTTTGTTTGTGT
CTGTTTTATTTACAAGGTTTTTTTTCAAAATGTGGTCTAATGGACCCTGT
TGGGTCCTTTATGACCCTGTCTAATGGTGGTATATCTCTGATCATTCTAG
AAAATTTAATAACATTTTTATTAACATTGTAAATGTTGAAATGATGAATG
TCTTCTTTTTTATCTAGGTTGTTCATTCATCAAATATGCAAACAGATTAC
AAGCACAAAATGCTATTAGAAAGTTGCACGGCTCTCAGACTATGGAGGTA
TGAATTCTTCATTGACTCACTAATTCCAACTTTTGCAATAAGTTGATATA
CTAAATCTAGCTTTATCTTACATTTTGGTATTGAAGAAATTAGATTTTGA
CTGTAGGTATTTTACTTTACCCTTTGATCAAATATGTATACATTATTACA
ATCTTTTCAGGGATGCTCTTCACCTCTTGTTGTTAAAATTGCTGATACAG
AAAAGGACAAATTGCAAAAACGTATGCAAGCTATGGCAACTAATTTAGTC
GGACTTGGTATGACAATGAGCCAATTTGGAATGCCTGGAGGCTTAATAAA
CAATGCATATCCTAATGTAGGACAAAATAATGCATATCAACAACTTTTAA
CACAAATGGCAATGCCAAATACACCTGTTCCAGCTCAGCTTGTTAGTAAT
CCTGGATTCGCTAATATGAACAATAACACTTTACCAAATGGTGTCAGTGC
TGCTCTCGTGGCTGCAATGGCAAACCAGCAACAACAACAATTACAAGGAC
TTACTCAAACACAACAAGCAAACTCTTCACTATTCAGTTCTAGTATTGGT
CAACAGTTACCTACAAGTAGTTTCACCACGTCACAAAGCGCAACAAATCC
ATTAGCTAATAATGGTTTGTCTGCTCTTCAAACTAACATATCAGGTATGA
CATTGTTTGAATTTTGAATTAGATAAGATTGATTCAATAATGATTGAAAA
ATGTTAATAAACAGTGCTTTAGTATAGAGGTAGAGTATTGGGATATGCTG
CATAAGGTTTTTGGTTTGATCTCCAGCCGGGCAAGTGGTCATATCAAATA
TTCCCAAAATGGTCCTTGATGCCTCTCTGCTTGATGCTCAGTAACTAAAG
AGAAGGGTCAAGAGTAAGTAAATAAATCCTGGGAAAAGAGCGGTATCGCC
CTGTGGTTGCAACTTTCTTTCTACTATTAATAAACCTGAATAAACAATTT
AACTTAGTTAAACAGGGAATGTAAGCAAGCTCCTTTTGATTCTGTTTGAT
TTAACAATTTATATGAGACAGAATGAGTTGGGGTATAAGCAGATAAAGCC
TAAACTCTAGTACTTTTTTTCCCTTAGGAGCCAATTCTATTGCTAACCTT
GGTGGACTAAACAATATGGCTAATCTTGCAAGTATGACAGGTTTAAGTTC
TACTCAAGTTGCAGCAAACCCAGCGGTAGTTGCTGCTGCAGCAGCAGCCT
CGGGGCCACTTCAAAGCCTCCCAAATATTCCTACCTCCAATGTCAATAGG
GCCNATTTGGAATGCCTGGAGGCTTAATAAACAATGCATATCCTAATGTA
GGACAAAATAATGCATATCAACAACTTTTAACACAAATGGCAATGCCAAA
TACACCTGTTCCAGCTCAGCTTGTTAGTAATCCTGGATTCGCTAATATGA
ACAATAACACTTTACCAAATGGTGTCAGTGCTGCTCTCGTGGCTGCAATG
GCAAACCAGCAACAACAACAATTACAAGGACTTACTCAAACACAACAAGC
AAACTCTTCACTATTCAGTTCTAGTATTGGTCAACAGTTACCTACAAGTA
GTTTCACCACGTCACAAAGCGCAACAAATCCATTAGCTAATAATGGTTTG
TCTGCTCTTCAAACTAACATATCAGGTATGACATTGATTCAATAATGATT
GAAAAATGTTAATAAACAGTGCTTTAGTATAGAGGTAGAGCATTGGGATA
CGCTGCATAAGGTTTTTGGTTTGATCTCCAGCCGGGCAAGTGGTCATATC
AAATATTCCCAAAATGGTCCTTGATGCCTCTCTGCTTGATGCTCAGTAAC
TAAAGAGAAGGGTCAAGAGTAAGTAAATAAATCCTGGGAAAAGAGCGGTA
TCGCCCTGTGGTTGCAACTTTCTTTCTACTATTAATAAACCTGAATAAAC
AATTTAACTTAGTTAAACAGGGAATGTAAGCAAGCTCCTTTTGATTCTGT
TTGATTTAACAATTTATATGAGACAGAATGAGTTGGGGTATAAGCAGATA
AAGCCTAAACTCTAGTACTTTTTTTCCCTTAGGAGCCAATTCTATTGCTA
ACCTTGGTGGACTAAACAATATGGCTAATCTTGCAAGTATGACAGGTTTA
AGTTCTACTCAAGTTGCAGCAAACCCAGCGGTAGTTGCTGCTGCAGCAGC
AGCCTCGGGGCCACTTCAAAGCCTCCCAAATATTCCTACCTCCAATGTCA
ATAGGGCCCAGCCTAACATTTCTGCAGAGCAATGGCAAACTGCTTACTCA
GGAGTCGAGCAATTTGTTGGTAAGACTGTCAAACAAACAGTCTTATCAAG
TGCATAGGAAATGTGTCAAAAACTTCTTGTTTATTTTGAAGATTTATCAT
CTTTGTGTTGTTGCTTTTCATTTCTTTCTGTTTTGTCATGTTGTTTTTAT
TGTATGTTATAAATTATGTGTGCACAAGAAGTTGGGAGTTGCGTGCAAGA
AGTGTGGAAATTTTAAAATATTGATTTTGCATTCAAGCTACTTTTCACAT
TTTTGTTCAGCAACTTTCATAATGTATGTCATTGTCTTATGCATTTGATA
AGTGTTTGTCTTTGTCCTGTTTTTGTCTAATTGTATTGATGACCTTCAAT
GACCATTTAAAAAAAAGGAGGGATGTGTAAATGATTTCCCTGTATATTTA
AAGTAGATATTATTCATAGTTCTAGATGAGGGTTGATATGTATCATTTCC
ATTATATTTCTGCTACTTCAACTAGCAATTCTTATTTGATCATGTGAGAA
TTATGCAAACCTATACTTTCTAATGTTGACTCTTTGTAGAGCTTTATTCT
TTAGATTTTTATGTGCTTACTTTGAATTCGGTATTTCTAAATCTTGTTTA
TTTTTAATTAAAGCTGCACTTCCACAAGCGTATCAAAATTTACAAAGGCA
GAATGTCGCACAACCCCAAAAAGAAGGTTAATTGTTATTTTGTCTGTTTT
ATTTTGAATGACTTTATTTTTCTATTTAAAGTTAATTGTTATTACTGGCA
AGAACCTTATTGATCATGTTGATTTTTATTTGCTTTCAGGTCCTGATGGT
TCAAATCTGTTCATTTACCACCTTCCACCTGAATTTACCGATGCTGATCT
GATGCAGACCTTTATGCCATTTGGAAATGTTCTCTCTGCTAAAGTCTTCA
TTGACAAACCTACGTTGTTGAGCAAATGTTTTGGTAATTGTTATTTTATA
AACACTTTATTTTTTTGTTGATCAGATGAAATTAATAGTTTGTGAATAGC
ACTCATATTTTTTCATTGTGTTACTTGTAAATTATCCTTTTTAAACTTTA
GCACATGTATCATTTTGTAACTTGCAATGTTTTGTAATGTTTACTTTTTT
TCAGGTTTTGTCAGTTTTGACAACCAACACAGTGCCAGGCAAGCTATTGA
AGCAATGAATGGATTTAGTGTTGGTTCCAAGCGGTTAAAGGTTCAGTTGA
AGCGACCAAAAGACCAAAACAAACCATATTAAAAAAACATGCATG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034108	XLOC_034108	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_238	supercontig	scaffold_238:14115..20809 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.82681e-09	0.865007	1.96234	0.976729	5.98051	7.56136	21.707	23.4896	2.24196	3.61542	0.812548	5.71896	3.50856	1.83737	1.00697	3.14248e-09	3.32499	0.682415	0.941991	1.67581e-08	13.2889	10.0368	6.92543	6.43217	0.952438	5.94918	8.561	6.60927	5.62474	7.48742

Blast

[Close]

BLAST of TCONS_00054036 vs. Swiss-Prot (Human)
Match: CELF2 (CUGBP Elav-like family member 2 OS=Homo sapiens GN=CELF2 PE=1 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 9.941e-122
Identity = 219/479 (45.72%), Postives = 290/479 (60.54%), Query Frame = 2

Query:  203 EPEACKLFIGQVPRTWTEKELKPIFDQYGEIHDLTVLHDKYTG--QHKGCAFLTYYEKESAQQAQNELHEKKTLPGCGHAMQVKPAVSE--TKTEDRKLFIGMLSKKLNEEDLRVMFSPFGTIEELTVLKNPDGTSKGCSFIKYANRLQAQNAIRKLHGSQTMEGCSSPLVVKIADTEKDKLQKRMQ------------AMATNLVGLGMTMSQFGMPGGLINNAYP--NVGQNNAYQQL--LTQMAMPNTPVPAQLVSNPGFANMNNNTLPNGVSAALVAAMANXXXXXXXXXXXXXXANSSLFSSSIGQQLPTSSFTTSQSATNPLA-----NNGLSA--LQTNISGANSIXXXXXXXXXXXXXXXXPQAYQN--LQRQNVAQPQKEGPDGSNLFIYHLPPEFTDADLMQTFMPFGNVLSAKVFIDKPTLLSKCFGFVSFDNQHSARQAIEAMNGFSVGSKRLKVQLKRPKDQNKPY 1552
            +P+A K+F+GQ+PR+W+EKELK +F+ YG ++ + VL D+     Q KGC F+T+Y +++A +AQN LH  KTLPG  H +Q+KPA SE     EDRKLFIGM+SKK NE D+RVMFSPFG IEE  +L+ PDG S+GC+F+ ++ R  AQNAI+ +H SQTMEGCSSP+VVK ADT+KDK Q+R+Q            A   NL GLG    Q+     L+  A    N+G  +  QQ+  +  + + N    A   +    +  + N  P   +++ + A+ +         T     NS    +S+G     +  T   +  N LA     N GL A  L    +G                A ALP  Y    LQ+Q+ A  QKEGP+G+NLFIYHLP EF D D++Q FMPFGNV+SAKVFIDK T LSKCFGFVS+DN  SA+ AI+AMNGF +G KRLKVQLKR K+ +KPY
Sbjct:   36 DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYL---ALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTPNSTAGAAMNSL---TSLGTLQGLAGATVGLNNINALAGMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 508

The following BLAST results are available for this feature:

BLAST of TCONS_00054036 vs. Swiss-Prot (Human)

BLAST of TCONS_00054036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CELF2	9.941e-122	45.72	CUGBP Elav-like family member 2 OS=Homo sapiens GN...	[more]

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TCONS_00054036 (transcript) - C. hemisphaerica