TCONS_00054033 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00054033
Unique Name	TCONS_00054033
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1548

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_238:14115..20789-

transcript sequence

>TCONS_00054033 ID=TCONS_00054033|Name=TCONS_00054033|organism=Clytia hemisphaerica|type=transcript|length=1548bp
GAAAAACTTTATACTGTAAAACTTCGTGGATAATTTAGTTTgtatttctc
tttctctttcagaaaaatatttatgtGGTTTGTTTAGTTGTTTGTGGAGT
AGCTTATTGTGTAGTGTAAAAAGCCAAATGTATTATGACTATTGATATGA
CAGCATCAACAAATAATATTGGTATGGCCAAAGAGCCAGAAGCTTGTAAA
CTGTTTATTGGACAAGTACCCAGAACATGGACTGAAAAAGAACTGAAACC
TATATTCGATCAATATGGTGAAATACATGACCTTACTGTGCTTCATGATA
AATACACTGGTCAACATAAAGgatgtGCATTTTTAACATACTATGAGAAA
GAATCAGCCCAGCAAGCACAAAATGAACTTCATGAAAAAAAGACACTTCC
AGGGTGTGGCCATGCAATGCAAGTCAAACCTGCAGTATCAGAGACGAAAA
CTGAAGATAGAAAATTATTCATTGGAATGTTATCCaagaaattaaatgaa
gaagaccTAAGAGTTATGTTTTCCCCCTTTGGAACGATAGAAGAACTGAC
AGTTTTGAAAAATCCTGATGGAACTAGTAAAgGTTGTTCATTCATCAAAT
ATGCAAACAGATTACAAGCACAAAATGCTATTAGAAAGTTGCACGGCTCT
CAGACTATGGAGGGATGCTCTTCACCTCTTGTTGTTAAAATTGCTGATAC
AGAAAAGGACAAATTGCAAAAACGTATGCAAGCTATGGCAACTAATTTAG
TCGGACTTGGTATGACAATGAGCCAATTTGGAATGCCTGGAGGCTTAATA
AACAATGCATATCCTAATGTAGGACAAAATAATGCATATCAACAACTTTT
AACACAAATGGCAATGCCAAATACACCTGTTCCAGCTCAGCTTGTTAGTA
ATCCTGGATTCGCTAATATGAACAATAACACTTTACCAAATGGTGTCAGT
GCTGCTCTCGTGGCTGCAATGGCAaaccagcaacaacaacaattaCAAGG
ACTTACTCAAACACAACAAGCAAACTCTTCACTATTCAGTTCTAGTATTG
GTCAACAGTTACCTACAAGTAGTTTCACCACGTCACAAAGCGCAACAAAT
CCATTAGCTAATAATGGTTTGTCTGCTCTTCAAACTAACATATCAGGAGC
CAATTCTATTGCTAACCTTGGTGGACTAAACAATATGGCTAATCTTGCAA
CTGCACTTCCACAAGCGTATCAAAATTTACAAAGGCAGAATGTCGCACAA
CCCCAAAAAGAAGGTCCTGATGGTTCAAATCTGTTCATTTACCACCTTCC
ACCTGAATTTACCGATGCTGATCTGATGCAGACCTTTATGCCATTTGGAA
ATGTTCTCTCTGCTAAAGTCTTCATTGACAAACCTACGTTGTTGAGCAAA
TGTTTTGgttttgtcAGTTTTGACAACCAACACAGTGCCAGGCAAGCTAT
TGAAGCAATGAATGGATTTAGTGTTGGTTCCAAGCGGTTAAAGGTTCAGT
TGAAGCGACCAaaagaccaaaacaaaccaTATTAAAAAAACATGCATG

Run BLAST on NCBI

transcript from alignment at scaffold_238:14115..20789-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00054033 ID=TCONS_00054033|Name=TCONS_00054033|organism=Clytia hemisphaerica|type=transcript|length=6675bp|location=Sequence derived from alignment at scaffold_238:14115..20789- (Clytia hemisphaerica)
GAAAAACTTTATACTGTAAAACTTCGTGGATAATTTAGTTTGTATTTCTC
TTTCTCTTTCAGAAAAATATTTATGTGGTTTGTTTAGTTGTTTGTGGAGT
AGCTTATTGTGTAGTGTAAAAAGCCAAATGTATTATGACTATTGATATGA
CAGCATCAACAAATAATATTGGTATGGCCAAAGAGCCAGAAGCTTGTAAA
CTGTTTATTGGACAAGTACCCAGAACATGGACTGAAAAAGAACTGAAACC
TATATTCGATCAATATGGTGAAATACATGACCTTACTGTGCTTCATGATA
AATACACTGGTCAACATAAAGGTTATTATTGGAATTACTATATAAAATTT
TGGCCAATTTAATCTAATTAATGTGTTGCACTTTCAAATTCTGTAATTCT
TGTGTTGTTGAATGATATCCTGGCTGGATGACAACACTGCCAACGCACTG
AATTGCCTTGTGATTTTATCCGGTGCTGAATAAAAGTATTTAAATTTCAC
CAGACAAAATTGTGTTACAGTTTTTTAGGCCGGCCACACNAGCGTTTGGA
AATTTTTCCCGCTTACATCGGAATTATTAGTCAGGTAAAAAAGTTCAGAC
TGTCAACAAAGTGTTGAAAAACTTTATACTGTAAAACTTCGTGGATAATT
TAGTTTGTATTTCTCTTTCTCTTTCAGAAAAATATTTATGTGGTTTGTTT
AGTTGTTTGTGGAGTAGCTTATTGTGTAGTGTAAAAAGCCAAATGTATTA
TGACTATTGATATGACAGCATCAACAAATAATATTGGTATGGCCAAAGAG
CCAGAAGCTTGTAAACTGTTTATTGGACAAGTACCCAGAACATGGACTGA
AAAAGAACTGAAACCTATATTCGATCAATATGGTGAAATACATGACCTTA
CTGTGCTTCATGATAAATACACTGGTCAACATAAAGGTTATTATTGGAAT
TACTATATAAAATTTTGGCCAATTTAATCTAATTAATGTGTTGCACTTTC
AAATTCTGTAATTCTTGTGTTGTTGAATGATATCCTGGCTGGATGACAAC
ACTGCCAACGCACTGAATTGCCTTGTGATTTTATCCGGTGCTGAATAAAA
GTATTTAAATTTCACCAGACAAAATTGTGTTACAGTTTTTTAGGCCGGCC
ACACCAATCACCACAAATAACTTGTGTTGTGTCGTCTGACCATCTGATAA
TTTTTCTTAATTTTCCAATTATTTTGAGTCAAGAAGTTGCAAAATTGTCG
GAATTTTATCCAATTCCATCCCACCCGCAATCTTTACATCAATCGCACGT
TTCATTGTTTTGGGCCATTCCAGAAAATTTTTGTTACCCCACGTCAGACG
ACGTGCATTTTTTAATTTTTTCTAGCCTCAGAAATTTTTTTTTTTCCAGT
GGTGGTCGGAAATTCCGATAAAAATCCATGTACTTTTGCAAAATGCATCG
GAAATTCCACTCTTTTTTGCCTTTTTTTAATTCAATTGCCTTGGAAATTC
ATACATTTTCTTCTCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTCTCTCACCTTGGAAATTTCGAATTTTGGTGAAAACTT
TTGCCCTCGGAAATCCTGTGTCGTCCGCCCCCCTGTTACAGACAAATTCT
GGAATGGCCCTTTACGGAAGAATTTTATTTATAAATATAAACAGAGATAA
TATCCAATCCTTTCCGTGAACGTGTTATTATCTCCTTAGTCATAAAACAG
AGATACCATATTTCAAAAAAAGAGGGGCTGTATCGTGATCACATGAAATC
CAAGAAAGGGCCACAGTTGACGGACCGTCTACATAAACAAGAAGACAGTG
GGCCGTTTATTTTCAATTTTCGATAGATTTGATTTCTGCCTGATTGATAG
TTTGAAAATCCATTTTTCCGACGTTATTTTCACTGACCGAATCTGACCGA
ATGACTCCATTTTTATTGCCTAAAACGACGCGAACACAAGTTATTTGCGA
TTCTGGCCTTACACCAATTCTTGACACCAGACTTTTTTGTTACTGTTTGC
GCGCTCATTGGATTGATCCACATCCATGTGCCAGGTTTAGATTGTCCAGA
GATAAAAAGTTTCATCCTTCAACACTTGGCATTAGGATAAGCCTGGTGCT
TCAGTCTGTTGTGTTGGCAGGATTGTCTATCATGCAAAATCATTTTGCCA
AATTGGTTGCAGTCAGATTGCATAGGAAAATATGCAAAACCTATGCAAAG
AGAATAATCAGAATATTATTAGCATTAAAGAAAAGCAACAACCTAAACTC
AACTGCTTGACTTTTACCCTTCTTGACAAAGAAATAATCAGAAAAAAGTG
TCACAAGAGCCTTGGGTCTTGAGAACTGAAAATTGTTCAGTAATTTTATG
AATTTCACTGCTGGTTTTTCTTCTTTCATATCTATAATTTATTAAATTAA
AGTATTTTTTTTTTCAGGATGTGCATTTTTAACATACTATGAGAAAGAAT
CAGCCCAGCAAGCACAAAATGAACTTCATGAAAAAAAGACACTTCCAGGG
GTAAGAATTCTGCTCAGGTTACAGTAATATTGTCCATTATTTTAAGATTG
ATAATATTATAAGATATATAATATTAGTTTGTACACACTTTTGAATCTTG
AAAGGTATATACAGTGACAATATTCATTTTACTCAAGCAGGTTCTACTCT
AACTATATCGACTTTCTTACTTATCTTCTAGTGTGGCCATGCAATGCAAG
TCAAACCTGCAGTATCAGAGACGAAAACTGAAGATAGAAAATTATTCATT
GGAATGTTATCCAAGAAATTAAATGAAGAAGACCTAAGAGTTATGTTTTC
CCCCTTTGGAACGATAGAAGAACTGACAGTTTTGAAAAATCCTGATGGAA
CTAGTAAAGGTAAAATTGTTTTGTTTGTGTCTGTTTTATTTACAAGGTTT
TTTTTCAAAATGTGGTCTAATGGACCCTGTTGGGTCCTTTATGACCCTGT
CTAATGGTGGTATATCTCTGATCATTCTAGAAAATTTAATAACATTTTTA
TTAACATTGTAAATGTTGAAATGATGAATGTCTTCTTTTTTATCTAGGTT
GTTCATTCATCAAATATGCAAACAGATTACAAGCACAAAATGCTATTAGA
AAGTTGCACGGCTCTCAGACTATGGAGGTATGAATTCTTCATTGACTCAC
TAATTCCAACTTTTGCAATAAGTTGATATACTAAATCTAGCTTTATCTTA
CATTTTGGTATTGAAGAAATTAGATTTTGACTGTAGGTATTTTACTTTAC
CCTTTGATCAAATATGTATACATTATTACAATCTTTTCAGGGATGCTCTT
CACCTCTTGTTGTTAAAATTGCTGATACAGAAAAGGACAAATTGCAAAAA
CGTATGCAAGCTATGGCAACTAATTTAGTCGGACTTGGTATGACAATGAG
CCAATTTGGAATGCCTGGAGGCTTAATAAACAATGCATATCCTAATGTAG
GACAAAATAATGCATATCAACAACTTTTAACACAAATGGCAATGCCAAAT
ACACCTGTTCCAGCTCAGCTTGTTAGTAATCCTGGATTCGCTAATATGAA
CAATAACACTTTACCAAATGGTGTCAGTGCTGCTCTCGTGGCTGCAATGG
CAAACCAGCAACAACAACAATTACAAGGACTTACTCAAACACAACAAGCA
AACTCTTCACTATTCAGTTCTAGTATTGGTCAACAGTTACCTACAAGTAG
TTTCACCACGTCACAAAGCGCAACAAATCCATTAGCTAATAATGGTTTGT
CTGCTCTTCAAACTAACATATCAGGTATGACATTGTTTGAATTTTGAATT
AGATAAGATTGATTCAATAATGATTGAAAAATGTTAATAAACAGTGCTTT
AGTATAGAGGTAGAGTATTGGGATATGCTGCATAAGGTTTTTGGTTTGAT
CTCCAGCCGGGCAAGTGGTCATATCAAATATTCCCAAAATGGTCCTTGAT
GCCTCTCTGCTTGATGCTCAGTAACTAAAGAGAAGGGTCAAGAGTAAGTA
AATAAATCCTGGGAAAAGAGCGGTATCGCCCTGTGGTTGCAACTTTCTTT
CTACTATTAATAAACCTGAATAAACAATTTAACTTAGTTAAACAGGGAAT
GTAAGCAAGCTCCTTTTGATTCTGTTTGATTTAACAATTTATATGAGACA
GAATGAGTTGGGGTATAAGCAGATAAAGCCTAAACTCTAGTACTTTTTTT
CCCTTAGGAGCCAATTCTATTGCTAACCTTGGTGGACTAAACAATATGGC
TAATCTTGCAAGTATGACAGGTTTAAGTTCTACTCAAGTTGCAGCAAACC
CAGCGGTAGTTGCTGCTGCAGCAGCAGCCTCGGGGCCACTTCAAAGCCTC
CCAAATATTCCTACCTCCAATGTCAATAGGGCCNATTTGGAATGCCTGGA
GGCTTAATAAACAATGCATATCCTAATGTAGGACAAAATAATGCATATCA
ACAACTTTTAACACAAATGGCAATGCCAAATACACCTGTTCCAGCTCAGC
TTGTTAGTAATCCTGGATTCGCTAATATGAACAATAACACTTTACCAAAT
GGTGTCAGTGCTGCTCTCGTGGCTGCAATGGCAAACCAGCAACAACAACA
ATTACAAGGACTTACTCAAACACAACAAGCAAACTCTTCACTATTCAGTT
CTAGTATTGGTCAACAGTTACCTACAAGTAGTTTCACCACGTCACAAAGC
GCAACAAATCCATTAGCTAATAATGGTTTGTCTGCTCTTCAAACTAACAT
ATCAGGTATGACATTGATTCAATAATGATTGAAAAATGTTAATAAACAGT
GCTTTAGTATAGAGGTAGAGCATTGGGATACGCTGCATAAGGTTTTTGGT
TTGATCTCCAGCCGGGCAAGTGGTCATATCAAATATTCCCAAAATGGTCC
TTGATGCCTCTCTGCTTGATGCTCAGTAACTAAAGAGAAGGGTCAAGAGT
AAGTAAATAAATCCTGGGAAAAGAGCGGTATCGCCCTGTGGTTGCAACTT
TCTTTCTACTATTAATAAACCTGAATAAACAATTTAACTTAGTTAAACAG
GGAATGTAAGCAAGCTCCTTTTGATTCTGTTTGATTTAACAATTTATATG
AGACAGAATGAGTTGGGGTATAAGCAGATAAAGCCTAAACTCTAGTACTT
TTTTTCCCTTAGGAGCCAATTCTATTGCTAACCTTGGTGGACTAAACAAT
ATGGCTAATCTTGCAAGTATGACAGGTTTAAGTTCTACTCAAGTTGCAGC
AAACCCAGCGGTAGTTGCTGCTGCAGCAGCAGCCTCGGGGCCACTTCAAA
GCCTCCCAAATATTCCTACCTCCAATGTCAATAGGGCCCAGCCTAACATT
TCTGCAGAGCAATGGCAAACTGCTTACTCAGGAGTCGAGCAATTTGTTGG
TAAGACTGTCAAACAAACAGTCTTATCAAGTGCATAGGAAATGTGTCAAA
AACTTCTTGTTTATTTTGAAGATTTATCATCTTTGTGTTGTTGCTTTTCA
TTTCTTTCTGTTTTGTCATGTTGTTTTTATTGTATGTTATAAATTATGTG
TGCACAAGAAGTTGGGAGTTGCGTGCAAGAAGTGTGGAAATTTTAAAATA
TTGATTTTGCATTCAAGCTACTTTTCACATTTTTGTTCAGCAACTTTCAT
AATGTATGTCATTGTCTTATGCATTTGATAAGTGTTTGTCTTTGTCCTGT
TTTTGTCTAATTGTATTGATGACCTTCAATGACCATTTAAAAAAAAGGAG
GGATGTGTAAATGATTTCCCTGTATATTTAAAGTAGATATTATTCATAGT
TCTAGATGAGGGTTGATATGTATCATTTCCATTATATTTCTGCTACTTCA
ACTAGCAATTCTTATTTGATCATGTGAGAATTATGCAAACCTATACTTTC
TAATGTTGACTCTTTGTAGAGCTTTATTCTTTAGATTTTTATGTGCTTAC
TTTGAATTCGGTATTTCTAAATCTTGTTTATTTTTAATTAAAGCTGCACT
TCCACAAGCGTATCAAAATTTACAAAGGCAGAATGTCGCACAACCCCAAA
AAGAAGGTTAATTGTTATTTTGTCTGTTTTATTTTGAATGACTTTATTTT
TCTATTTAAAGTTAATTGTTATTACTGGCAAGAACCTTATTGATCATGTT
GATTTTTATTTGCTTTCAGGTCCTGATGGTTCAAATCTGTTCATTTACCA
CCTTCCACCTGAATTTACCGATGCTGATCTGATGCAGACCTTTATGCCAT
TTGGAAATGTTCTCTCTGCTAAAGTCTTCATTGACAAACCTACGTTGTTG
AGCAAATGTTTTGGTAATTGTTATTTTATAAACACTTTATTTTTTTGTTG
ATCAGATGAAATTAATAGTTTGTGAATAGCACTCATATTTTTTCATTGTG
TTACTTGTAAATTATCCTTTTTAAACTTTAGCACATGTATCATTTTGTAA
CTTGCAATGTTTTGTAATGTTTACTTTTTTTCAGGTTTTGTCAGTTTTGA
CAACCAACACAGTGCCAGGCAAGCTATTGAAGCAATGAATGGATTTAGTG
TTGGTTCCAAGCGGTTAAAGGTTCAGTTGAAGCGACCAAAAGACCAAAAC
AAACCATATTAAAAAAACATGCATG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034108	XLOC_034108	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_238	supercontig	scaffold_238:14115..20789 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.31399	2.11365	0.626217	0.971106	94.6037	77.5017	170.42	185.049	7.69728	15.964	22.1663	2.00008	8.66963	12.6838	6.20596	4.70627	5.19537	10.7686	2.30864	7.22375	3.35949	17.1128	0.0690974	3.65135	38.5375	35.7832	8.57919	0.0943767	0.873453	0.0390689

Blast

[Close]

BLAST of TCONS_00054033 vs. Swiss-Prot (Human)
Match: CELF2 (CUGBP Elav-like family member 2 OS=Homo sapiens GN=CELF2 PE=1 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 7.954e-122
Identity = 219/479 (45.72%), Postives = 290/479 (60.54%), Query Frame = 3

Query:  183 EPEACKLFIGQVPRTWTEKELKPIFDQYGEIHDLTVLHDKYTG--QHKGCAFLTYYEKESAQQAQNELHEKKTLPGCGHAMQVKPAVSE--TKTEDRKLFIGMLSKKLNEEDLRVMFSPFGTIEELTVLKNPDGTSKGCSFIKYANRLQAQNAIRKLHGSQTMEGCSSPLVVKIADTEKDKLQKRMQ------------AMATNLVGLGMTMSQFGMPGGLINNAYP--NVGQNNAYQQL--LTQMAMPNTPVPAQLVSNPGFANMNNNTLPNGVSAALVAAMANXXXXXXXXXXXXXXANSSLFSSSIGQQLPTSSFTTSQSATNPLA-----NNGLSA--LQTNISGANSIXXXXXXXXXXXXXXXXPQAYQN--LQRQNVAQPQKEGPDGSNLFIYHLPPEFTDADLMQTFMPFGNVLSAKVFIDKPTLLSKCFGFVSFDNQHSARQAIEAMNGFSVGSKRLKVQLKRPKDQNKPY 1532
            +P+A K+F+GQ+PR+W+EKELK +F+ YG ++ + VL D+     Q KGC F+T+Y +++A +AQN LH  KTLPG  H +Q+KPA SE     EDRKLFIGM+SKK NE D+RVMFSPFG IEE  +L+ PDG S+GC+F+ ++ R  AQNAI+ +H SQTMEGCSSP+VVK ADT+KDK Q+R+Q            A   NL GLG    Q+     L+  A    N+G  +  QQ+  +  + + N    A   +    +  + N  P   +++ + A+ +         T     NS    +S+G     +  T   +  N LA     N GL A  L    +G                A ALP  Y    LQ+Q+ A  QKEGP+G+NLFIYHLP EF D D++Q FMPFGNV+SAKVFIDK T LSKCFGFVS+DN  SA+ AI+AMNGF +G KRLKVQLKR K+ +KPY
Sbjct:   36 DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYL---ALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTPNSTAGAAMNSL---TSLGTLQGLAGATVGLNNINALAGMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 508

The following BLAST results are available for this feature:

BLAST of TCONS_00054033 vs. Swiss-Prot (Human)

BLAST of TCONS_00054033 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CELF2	7.954e-122	45.72	CUGBP Elav-like family member 2 OS=Homo sapiens GN...	[more]

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TCONS_00054033 (transcript) - C. hemisphaerica