TCONS_00054030 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054030
Unique NameTCONS_00054030
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2252

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054030 ID=TCONS_00054030|Name=TCONS_00054030|organism=Clytia hemisphaerica|type=transcript|length=2252bp
GGATAATTTAGTTTgtatttctctttctctttcagaaaaatatttatgtG
GTTTGTTTAGTTGTTTGTGGAGTAGCTTATTGTGTAGTGTAAAAAGCCAA
ATGTATTATGACTATTGATATGACAGCATCAACAAATAATATTGGTATGG
CCAAAGAGCCAGAAGCTTGTAAACTGTTTATTGGACAAGTACCCAGAACA
TGGACTGAAAAAGAACTGAAACCTATATTCGATCAATATGGTGAAATACA
TGACCTTACTGTGCTTCATGATAAATACACTGGTCAACATAAAGgatgtG
CATTTTTAACATACTATGAGAAAGAATCAGCCCAGCAAGCACAAAATGAA
CTTCATGAAAAAAAGACACTTCCAGGGTGTGGCCATGCAATGCAAGTCAA
ACCTGCAGTATCAGAGACGAAAACTGAAGATAGAAAATTATTCATTGGAA
TGTTATCCaagaaattaaatgaagaagaccTAAGAGTTATGTTTTCCCCC
TTTGGAACGATAGAAGAACTGACAGTTTTGAAAAATCCTGATGGAACTAG
TAAAgGTTGTTCATTCATCAAATATGCAAACAGATTACAAGCACAAAATG
CTATTAGAAAGTTGCACGGCTCTCAGACTATGGAGGGATGCTCTTCACCT
CTTGTTGTTAAAATTGCTGATACAGAAAAGGACAAATTGCAAAAACGTAT
GCAAGCTATGGCAACTAATTTAGTCGGACTTGGTATGACAATGAGCCAAT
TTGGAATGCCTGGAGGCTTAATAAACAATGCATATCCTAATGTAGGACAA
AATAATGCATATCAACAACTTTTAACACAAATGGCAATGCCAAATACACC
TGTTCCAGCTCAGCTTGTTAGTAATCCTGGATTCGCTAATATGAACAATA
ACACTTTACCAAATGGTGTCAGTGCTGCTCTCGTGGCTGCAATGGCAaac
cagcaacaacaacaattaCAAGGACTTACTCAAACACAACAAGCAAACTC
TTCACTATTCAGTTCTAGTATTGGTCAACAGTTACCTACAAGTAGTTTCA
CCACGTCACAAAGCGCAACAAATCCATTAGCTAATAATGGTTTGTCTGCT
CTTCAAACTAACATATCAGGAGCCAATTCTATTGCTAACCTTGGTGGACT
AAACAATATGGCTAATCTTGCAAGTATGACAGGTTTAAGTTCTACTCAAG
TTGCAGCAAACCCAGCGGTAGTTGCTGCTGCAGCAGCAGCCTCGGGGCCA
CTTCAAAGCCTCCCAAATATTCCTACCTCCAATGTCAATAGGGCCNATTT
GGAATGCCTGGAGGCTTAATAAACAATGCATATCCTAATGTAGGACAAAA
TAATGCATATCAACAACTTTTAACACAAATGGCAATGCCAAATACACCTG
TTCCAGCTCAGCTTGTTAGTAATCCTGGATTCGCTAATATGAACAATAAC
ACTTTACCAAATGGTGTCAGTGCTGCTCTCGTGGCTGCAATGGCAaacca
gcaacaacaacaattaCAAGGACTTACTCAAACACAACAAGCAAACTCTT
CACTATTCAGTTCTAGTATTGGTCAACAGTTACCTACAAGTAGTTTCACC
ACGTCACAAAGCGCAACAAATCCATTAGCTAATAATGGTTTGTCTGCTCT
TCAAACTAACATATCAGGAGCCAATTCTATTGCTAACCTTGGTGGACTAA
ACAATATGGCTAATCTTGCAAGTATGACAGGTTTAAGTTCTACTCAAGTT
GCAGCAAACCCAGCGGTAGTTGCTGCTGCAGCAGCAGCCTCGGGGCCACT
TCAAAGCCTCCCAAATATTCCTACCTCCAATGTCAATAGGGCCCAGCCTA
ACATTTCTGCAGAGCAATGGCAAACTGCTTACTCAGGAGTCGAGCAATTT
GTTGCTGCACTTCCACAAGCGTATCAAAATTTACAAAGGCAGAATGTCGC
ACAACCCCAAAAAGAAGGTCCTGATGGTTCAAATCTGTTCATTTACCACC
TTCCACCTGAATTTACCGATGCTGATCTGATGCAGACCTTTATGCCATTT
GGAAATGTTCTCTCTGCTAAAGTCTTCATTGACAAACCTACGTTGTTGAG
CAAATGTTTTGgttttgtcAGTTTTGACAACCAACACAGTGCCAGGCAAG
CTATTGAAGCAATGAATGGATTTAGTGTTGGTTCCAAGCGGTTAAAGGTT
CAGTTGAAGCGACCAaaagaccaaaacaaaccaTATTAAAAAAACATGCA
TG
Run BLAST on NCBI

transcript from alignment at scaffold_238:14115..20762-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054030 ID=TCONS_00054030|Name=TCONS_00054030|organism=Clytia hemisphaerica|type=transcript|length=6648bp|location=Sequence derived from alignment at scaffold_238:14115..20762- (Clytia hemisphaerica)
GGATAATTTAGTTTGTATTTCTCTTTCTCTTTCAGAAAAATATTTATGTG
GTTTGTTTAGTTGTTTGTGGAGTAGCTTATTGTGTAGTGTAAAAAGCCAA
ATGTATTATGACTATTGATATGACAGCATCAACAAATAATATTGGTATGG
CCAAAGAGCCAGAAGCTTGTAAACTGTTTATTGGACAAGTACCCAGAACA
TGGACTGAAAAAGAACTGAAACCTATATTCGATCAATATGGTGAAATACA
TGACCTTACTGTGCTTCATGATAAATACACTGGTCAACATAAAGGTTATT
ATTGGAATTACTATATAAAATTTTGGCCAATTTAATCTAATTAATGTGTT
GCACTTTCAAATTCTGTAATTCTTGTGTTGTTGAATGATATCCTGGCTGG
ATGACAACACTGCCAACGCACTGAATTGCCTTGTGATTTTATCCGGTGCT
GAATAAAAGTATTTAAATTTCACCAGACAAAATTGTGTTACAGTTTTTTA
GGCCGGCCACACNAGCGTTTGGAAATTTTTCCCGCTTACATCGGAATTAT
TAGTCAGGTAAAAAAGTTCAGACTGTCAACAAAGTGTTGAAAAACTTTAT
ACTGTAAAACTTCGTGGATAATTTAGTTTGTATTTCTCTTTCTCTTTCAG
AAAAATATTTATGTGGTTTGTTTAGTTGTTTGTGGAGTAGCTTATTGTGT
AGTGTAAAAAGCCAAATGTATTATGACTATTGATATGACAGCATCAACAA
ATAATATTGGTATGGCCAAAGAGCCAGAAGCTTGTAAACTGTTTATTGGA
CAAGTACCCAGAACATGGACTGAAAAAGAACTGAAACCTATATTCGATCA
ATATGGTGAAATACATGACCTTACTGTGCTTCATGATAAATACACTGGTC
AACATAAAGGTTATTATTGGAATTACTATATAAAATTTTGGCCAATTTAA
TCTAATTAATGTGTTGCACTTTCAAATTCTGTAATTCTTGTGTTGTTGAA
TGATATCCTGGCTGGATGACAACACTGCCAACGCACTGAATTGCCTTGTG
ATTTTATCCGGTGCTGAATAAAAGTATTTAAATTTCACCAGACAAAATTG
TGTTACAGTTTTTTAGGCCGGCCACACCAATCACCACAAATAACTTGTGT
TGTGTCGTCTGACCATCTGATAATTTTTCTTAATTTTCCAATTATTTTGA
GTCAAGAAGTTGCAAAATTGTCGGAATTTTATCCAATTCCATCCCACCCG
CAATCTTTACATCAATCGCACGTTTCATTGTTTTGGGCCATTCCAGAAAA
TTTTTGTTACCCCACGTCAGACGACGTGCATTTTTTAATTTTTTCTAGCC
TCAGAAATTTTTTTTTTTCCAGTGGTGGTCGGAAATTCCGATAAAAATCC
ATGTACTTTTGCAAAATGCATCGGAAATTCCACTCTTTTTTGCCTTTTTT
TAATTCAATTGCCTTGGAAATTCATACATTTTCTTCTCTCANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCTCACCTTGGAA
ATTTCGAATTTTGGTGAAAACTTTTGCCCTCGGAAATCCTGTGTCGTCCG
CCCCCCTGTTACAGACAAATTCTGGAATGGCCCTTTACGGAAGAATTTTA
TTTATAAATATAAACAGAGATAATATCCAATCCTTTCCGTGAACGTGTTA
TTATCTCCTTAGTCATAAAACAGAGATACCATATTTCAAAAAAAGAGGGG
CTGTATCGTGATCACATGAAATCCAAGAAAGGGCCACAGTTGACGGACCG
TCTACATAAACAAGAAGACAGTGGGCCGTTTATTTTCAATTTTCGATAGA
TTTGATTTCTGCCTGATTGATAGTTTGAAAATCCATTTTTCCGACGTTAT
TTTCACTGACCGAATCTGACCGAATGACTCCATTTTTATTGCCTAAAACG
ACGCGAACACAAGTTATTTGCGATTCTGGCCTTACACCAATTCTTGACAC
CAGACTTTTTTGTTACTGTTTGCGCGCTCATTGGATTGATCCACATCCAT
GTGCCAGGTTTAGATTGTCCAGAGATAAAAAGTTTCATCCTTCAACACTT
GGCATTAGGATAAGCCTGGTGCTTCAGTCTGTTGTGTTGGCAGGATTGTC
TATCATGCAAAATCATTTTGCCAAATTGGTTGCAGTCAGATTGCATAGGA
AAATATGCAAAACCTATGCAAAGAGAATAATCAGAATATTATTAGCATTA
AAGAAAAGCAACAACCTAAACTCAACTGCTTGACTTTTACCCTTCTTGAC
AAAGAAATAATCAGAAAAAAGTGTCACAAGAGCCTTGGGTCTTGAGAACT
GAAAATTGTTCAGTAATTTTATGAATTTCACTGCTGGTTTTTCTTCTTTC
ATATCTATAATTTATTAAATTAAAGTATTTTTTTTTTCAGGATGTGCATT
TTTAACATACTATGAGAAAGAATCAGCCCAGCAAGCACAAAATGAACTTC
ATGAAAAAAAGACACTTCCAGGGGTAAGAATTCTGCTCAGGTTACAGTAA
TATTGTCCATTATTTTAAGATTGATAATATTATAAGATATATAATATTAG
TTTGTACACACTTTTGAATCTTGAAAGGTATATACAGTGACAATATTCAT
TTTACTCAAGCAGGTTCTACTCTAACTATATCGACTTTCTTACTTATCTT
CTAGTGTGGCCATGCAATGCAAGTCAAACCTGCAGTATCAGAGACGAAAA
CTGAAGATAGAAAATTATTCATTGGAATGTTATCCAAGAAATTAAATGAA
GAAGACCTAAGAGTTATGTTTTCCCCCTTTGGAACGATAGAAGAACTGAC
AGTTTTGAAAAATCCTGATGGAACTAGTAAAGGTAAAATTGTTTTGTTTG
TGTCTGTTTTATTTACAAGGTTTTTTTTCAAAATGTGGTCTAATGGACCC
TGTTGGGTCCTTTATGACCCTGTCTAATGGTGGTATATCTCTGATCATTC
TAGAAAATTTAATAACATTTTTATTAACATTGTAAATGTTGAAATGATGA
ATGTCTTCTTTTTTATCTAGGTTGTTCATTCATCAAATATGCAAACAGAT
TACAAGCACAAAATGCTATTAGAAAGTTGCACGGCTCTCAGACTATGGAG
GTATGAATTCTTCATTGACTCACTAATTCCAACTTTTGCAATAAGTTGAT
ATACTAAATCTAGCTTTATCTTACATTTTGGTATTGAAGAAATTAGATTT
TGACTGTAGGTATTTTACTTTACCCTTTGATCAAATATGTATACATTATT
ACAATCTTTTCAGGGATGCTCTTCACCTCTTGTTGTTAAAATTGCTGATA
CAGAAAAGGACAAATTGCAAAAACGTATGCAAGCTATGGCAACTAATTTA
GTCGGACTTGGTATGACAATGAGCCAATTTGGAATGCCTGGAGGCTTAAT
AAACAATGCATATCCTAATGTAGGACAAAATAATGCATATCAACAACTTT
TAACACAAATGGCAATGCCAAATACACCTGTTCCAGCTCAGCTTGTTAGT
AATCCTGGATTCGCTAATATGAACAATAACACTTTACCAAATGGTGTCAG
TGCTGCTCTCGTGGCTGCAATGGCAAACCAGCAACAACAACAATTACAAG
GACTTACTCAAACACAACAAGCAAACTCTTCACTATTCAGTTCTAGTATT
GGTCAACAGTTACCTACAAGTAGTTTCACCACGTCACAAAGCGCAACAAA
TCCATTAGCTAATAATGGTTTGTCTGCTCTTCAAACTAACATATCAGGTA
TGACATTGTTTGAATTTTGAATTAGATAAGATTGATTCAATAATGATTGA
AAAATGTTAATAAACAGTGCTTTAGTATAGAGGTAGAGTATTGGGATATG
CTGCATAAGGTTTTTGGTTTGATCTCCAGCCGGGCAAGTGGTCATATCAA
ATATTCCCAAAATGGTCCTTGATGCCTCTCTGCTTGATGCTCAGTAACTA
AAGAGAAGGGTCAAGAGTAAGTAAATAAATCCTGGGAAAAGAGCGGTATC
GCCCTGTGGTTGCAACTTTCTTTCTACTATTAATAAACCTGAATAAACAA
TTTAACTTAGTTAAACAGGGAATGTAAGCAAGCTCCTTTTGATTCTGTTT
GATTTAACAATTTATATGAGACAGAATGAGTTGGGGTATAAGCAGATAAA
GCCTAAACTCTAGTACTTTTTTTCCCTTAGGAGCCAATTCTATTGCTAAC
CTTGGTGGACTAAACAATATGGCTAATCTTGCAAGTATGACAGGTTTAAG
TTCTACTCAAGTTGCAGCAAACCCAGCGGTAGTTGCTGCTGCAGCAGCAG
CCTCGGGGCCACTTCAAAGCCTCCCAAATATTCCTACCTCCAATGTCAAT
AGGGCCNATTTGGAATGCCTGGAGGCTTAATAAACAATGCATATCCTAAT
GTAGGACAAAATAATGCATATCAACAACTTTTAACACAAATGGCAATGCC
AAATACACCTGTTCCAGCTCAGCTTGTTAGTAATCCTGGATTCGCTAATA
TGAACAATAACACTTTACCAAATGGTGTCAGTGCTGCTCTCGTGGCTGCA
ATGGCAAACCAGCAACAACAACAATTACAAGGACTTACTCAAACACAACA
AGCAAACTCTTCACTATTCAGTTCTAGTATTGGTCAACAGTTACCTACAA
GTAGTTTCACCACGTCACAAAGCGCAACAAATCCATTAGCTAATAATGGT
TTGTCTGCTCTTCAAACTAACATATCAGGTATGACATTGATTCAATAATG
ATTGAAAAATGTTAATAAACAGTGCTTTAGTATAGAGGTAGAGCATTGGG
ATACGCTGCATAAGGTTTTTGGTTTGATCTCCAGCCGGGCAAGTGGTCAT
ATCAAATATTCCCAAAATGGTCCTTGATGCCTCTCTGCTTGATGCTCAGT
AACTAAAGAGAAGGGTCAAGAGTAAGTAAATAAATCCTGGGAAAAGAGCG
GTATCGCCCTGTGGTTGCAACTTTCTTTCTACTATTAATAAACCTGAATA
AACAATTTAACTTAGTTAAACAGGGAATGTAAGCAAGCTCCTTTTGATTC
TGTTTGATTTAACAATTTATATGAGACAGAATGAGTTGGGGTATAAGCAG
ATAAAGCCTAAACTCTAGTACTTTTTTTCCCTTAGGAGCCAATTCTATTG
CTAACCTTGGTGGACTAAACAATATGGCTAATCTTGCAAGTATGACAGGT
TTAAGTTCTACTCAAGTTGCAGCAAACCCAGCGGTAGTTGCTGCTGCAGC
AGCAGCCTCGGGGCCACTTCAAAGCCTCCCAAATATTCCTACCTCCAATG
TCAATAGGGCCCAGCCTAACATTTCTGCAGAGCAATGGCAAACTGCTTAC
TCAGGAGTCGAGCAATTTGTTGGTAAGACTGTCAAACAAACAGTCTTATC
AAGTGCATAGGAAATGTGTCAAAAACTTCTTGTTTATTTTGAAGATTTAT
CATCTTTGTGTTGTTGCTTTTCATTTCTTTCTGTTTTGTCATGTTGTTTT
TATTGTATGTTATAAATTATGTGTGCACAAGAAGTTGGGAGTTGCGTGCA
AGAAGTGTGGAAATTTTAAAATATTGATTTTGCATTCAAGCTACTTTTCA
CATTTTTGTTCAGCAACTTTCATAATGTATGTCATTGTCTTATGCATTTG
ATAAGTGTTTGTCTTTGTCCTGTTTTTGTCTAATTGTATTGATGACCTTC
AATGACCATTTAAAAAAAAGGAGGGATGTGTAAATGATTTCCCTGTATAT
TTAAAGTAGATATTATTCATAGTTCTAGATGAGGGTTGATATGTATCATT
TCCATTATATTTCTGCTACTTCAACTAGCAATTCTTATTTGATCATGTGA
GAATTATGCAAACCTATACTTTCTAATGTTGACTCTTTGTAGAGCTTTAT
TCTTTAGATTTTTATGTGCTTACTTTGAATTCGGTATTTCTAAATCTTGT
TTATTTTTAATTAAAGCTGCACTTCCACAAGCGTATCAAAATTTACAAAG
GCAGAATGTCGCACAACCCCAAAAAGAAGGTTAATTGTTATTTTGTCTGT
TTTATTTTGAATGACTTTATTTTTCTATTTAAAGTTAATTGTTATTACTG
GCAAGAACCTTATTGATCATGTTGATTTTTATTTGCTTTCAGGTCCTGAT
GGTTCAAATCTGTTCATTTACCACCTTCCACCTGAATTTACCGATGCTGA
TCTGATGCAGACCTTTATGCCATTTGGAAATGTTCTCTCTGCTAAAGTCT
TCATTGACAAACCTACGTTGTTGAGCAAATGTTTTGGTAATTGTTATTTT
ATAAACACTTTATTTTTTTGTTGATCAGATGAAATTAATAGTTTGTGAAT
AGCACTCATATTTTTTCATTGTGTTACTTGTAAATTATCCTTTTTAAACT
TTAGCACATGTATCATTTTGTAACTTGCAATGTTTTGTAATGTTTACTTT
TTTTCAGGTTTTGTCAGTTTTGACAACCAACACAGTGCCAGGCAAGCTAT
TGAAGCAATGAATGGATTTAGTGTTGGTTCCAAGCGGTTAAAGGTTCAGT
TGAAGCGACCAAAAGACCAAAACAAACCATATTAAAAAAACATGCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034108XLOC_034108Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054030-exon-scaffold_238-1575043694:20469..20762TCONS_00054030-exon-scaffold_238-1575043694:20469..20762Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1575043694:18240..18322TCONS_00054030-exon-scaffold_238-1575043694:18240..18322Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1575043694:17881..18058TCONS_00054030-exon-scaffold_238-1575043694:17881..18058Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1575043694:17613..17692TCONS_00054030-exon-scaffold_238-1575043694:17613..17692Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1575043694:16966..17449TCONS_00054030-exon-scaffold_238-1575043694:16966..17449Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1575043694:15985..16532TCONS_00054030-exon-scaffold_238-1575043694:15985..16532Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1575043694:15341..15577TCONS_00054030-exon-scaffold_238-1575043694:15341..15577Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1575043694:14684..14746TCONS_00054030-exon-scaffold_238-1575043694:14684..14746Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1575043694:14427..14570TCONS_00054030-exon-scaffold_238-1575043694:14427..14570Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1575043694:14115..14255TCONS_00054030-exon-scaffold_238-1575043694:14115..14255Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1510915933:20469..20762TCONS_00054030-exon-scaffold_238-1510915933:20469..20762Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1510915933:18240..18322TCONS_00054030-exon-scaffold_238-1510915933:18240..18322Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1510915933:17881..18058TCONS_00054030-exon-scaffold_238-1510915933:17881..18058Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1510915933:17613..17692TCONS_00054030-exon-scaffold_238-1510915933:17613..17692Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1510915933:16966..17449TCONS_00054030-exon-scaffold_238-1510915933:16966..17449Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1510915933:15985..16532TCONS_00054030-exon-scaffold_238-1510915933:15985..16532Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1510915933:15341..15577TCONS_00054030-exon-scaffold_238-1510915933:15341..15577Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1510915933:14684..14746TCONS_00054030-exon-scaffold_238-1510915933:14684..14746Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1510915933:14427..14570TCONS_00054030-exon-scaffold_238-1510915933:14427..14570Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1510915933:14115..14255TCONS_00054030-exon-scaffold_238-1510915933:14115..14255Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1491911889:20469..20762TCONS_00054030-exon-scaffold_238-1491911889:20469..20762Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1491911889:18240..18322TCONS_00054030-exon-scaffold_238-1491911889:18240..18322Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1491911889:17881..18058TCONS_00054030-exon-scaffold_238-1491911889:17881..18058Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1491911889:17613..17692TCONS_00054030-exon-scaffold_238-1491911889:17613..17692Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1491911889:16966..17449TCONS_00054030-exon-scaffold_238-1491911889:16966..17449Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1491911889:15985..16532TCONS_00054030-exon-scaffold_238-1491911889:15985..16532Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1491911889:15341..15577TCONS_00054030-exon-scaffold_238-1491911889:15341..15577Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1491911889:14684..14746TCONS_00054030-exon-scaffold_238-1491911889:14684..14746Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1491911889:14427..14570TCONS_00054030-exon-scaffold_238-1491911889:14427..14570Clytia hemisphaericaexon
TCONS_00054030-exon-scaffold_238-1491911889:14115..14255TCONS_00054030-exon-scaffold_238-1491911889:14115..14255Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_238supercontigscaffold_238:14115..20762 -
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00054030 vs. Swiss-Prot (Human)
Match: CELF3 (CUGBP Elav-like family member 3 OS=Homo sapiens GN=CELF3 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 3.750e-77
Identity = 120/201 (59.70%), Postives = 152/201 (75.62%), Query Frame = 3 
Query:  153 KEPEACKLFIGQVPRTWTEKELKPIFDQYGEIHDLTVLHDKYTGQHKGCAFLTYYEKESAQQAQNELHEKKTLPGCGHAMQVKPAVSETKTEDRKLFIGMLSKKLNEEDLRVMFSPFGTIEELTVLKNPDGTSKGCSFIKYANRLQAQNAIRKLHGSQTMEGCSSPLVVKIADTEKDKLQKRMQAMATNLVGLGMTMSQFG 755
            KEP+A KLF+GQ+PR   EK+LKPIF+Q+G I +LTV+ DKYTG HKGCAFLTY  ++SA +AQ+ LHE+KTLPG    +QVKPA SE++ EDRKLF+GML K+  +ED+R MF PFGTI+E TVL+ PDGTSKGC+F+K+    +AQ AI  LH S+T+ G SS LVVK ADTEK++  +RMQ +AT L        QFG
Sbjct:    2 KEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFG 202

HSP 2 Score: 155.992 bits (393), Expect = 1.331e-40
Identity = 79/156 (50.64%), Postives = 100/156 (64.10%), Query Frame = 2 
Query: 1847 PNISAEQWQTAYSGVEQFVAALPQAYQNLQRQNVAQP--------------------------QKEGPDGSNLFIYHLPPEFTDADLMQTFMPFGNVLSAKVFIDKPTLLSKCFGFVSFDNQHSARQAIEAMNGFSVGSKRLKVQLKRPKDQNKPY 2236
            P    +  Q AY+G++ + AA P AY +L      QP                          Q+EGPDG N+FIYHLP EFTD++++Q F+PFG+V+SAKVF+D+ T  SKCFGFVSFDN  SA+ AI+AMNGF +G KRLKVQLKRPKD N+PY
Sbjct:  311 PAAPVDPLQQAYAGMQHYTAAYPAAY-SLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 465
The following BLAST results are available for this feature:
BLAST of TCONS_00054030 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CELF33.750e-7759.70CUGBP Elav-like family member 3 OS=Homo sapiens GN... [more]
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