TCONS_00054029 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00054029
Unique Name	TCONS_00054029
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2222

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_238:14115..20732-

transcript sequence

>TCONS_00054029 ID=TCONS_00054029|Name=TCONS_00054029|organism=Clytia hemisphaerica|type=transcript|length=2222bp
ttcagaaaaatatttatgtGGTTTGTTTAGTTGTTTGTGGAGTAGCTTAT
TGTGTAGTGTAAAAAGCCAAATGTATTATGACTATTGATATGACAGCATC
AACAAATAATATTGGTATGGCCAAAGAGCCAGAAGCTTGTAAACTGTTTA
TTGGACAAGTACCCAGAACATGGACTGAAAAAGAACTGAAACCTATATTC
GATCAATATGGTGAAATACATGACCTTACTGTGCTTCATGATAAATACAC
TGGTCAACATAAAGgatgtGCATTTTTAACATACTATGAGAAAGAATCAG
CCCAGCAAGCACAAAATGAACTTCATGAAAAAAAGACACTTCCAGGGTGT
GGCCATGCAATGCAAGTCAAACCTGCAGTATCAGAGACGAAAACTGAAGA
TAGAAAATTATTCATTGGAATGTTATCCaagaaattaaatgaagaagacc
TAAGAGTTATGTTTTCCCCCTTTGGAACGATAGAAGAACTGACAGTTTTG
AAAAATCCTGATGGAACTAGTAAAgGTTGTTCATTCATCAAATATGCAAA
CAGATTACAAGCACAAAATGCTATTAGAAAGTTGCACGGCTCTCAGACTA
TGGAGGGATGCTCTTCACCTCTTGTTGTTAAAATTGCTGATACAGAAAAG
GACAAATTGCAAAAACGTATGCAAGCTATGGCAACTAATTTAGTCGGACT
TGGTATGACAATGAGCCAATTTGGAATGCCTGGAGGCTTAATAAACAATG
CATATCCTAATGTAGGACAAAATAATGCATATCAACAACTTTTAACACAA
ATGGCAATGCCAAATACACCTGTTCCAGCTCAGCTTGTTAGTAATCCTGG
ATTCGCTAATATGAACAATAACACTTTACCAAATGGTGTCAGTGCTGCTC
TCGTGGCTGCAATGGCAaaccagcaacaacaacaattaCAAGGACTTACT
CAAACACAACAAGCAAACTCTTCACTATTCAGTTCTAGTATTGGTCAACA
GTTACCTACAAGTAGTTTCACCACGTCACAAAGCGCAACAAATCCATTAG
CTAATAATGGTTTGTCTGCTCTTCAAACTAACATATCAGGAGCCAATTCT
ATTGCTAACCTTGGTGGACTAAACAATATGGCTAATCTTGCAAGTATGAC
AGGTTTAAGTTCTACTCAAGTTGCAGCAAACCCAGCGGTAGTTGCTGCTG
CAGCAGCAGCCTCGGGGCCACTTCAAAGCCTCCCAAATATTCCTACCTCC
AATGTCAATAGGGCCNATTTGGAATGCCTGGAGGCTTAATAAACAATGCA
TATCCTAATGTAGGACAAAATAATGCATATCAACAACTTTTAACACAAAT
GGCAATGCCAAATACACCTGTTCCAGCTCAGCTTGTTAGTAATCCTGGAT
TCGCTAATATGAACAATAACACTTTACCAAATGGTGTCAGTGCTGCTCTC
GTGGCTGCAATGGCAaaccagcaacaacaacaattaCAAGGACTTACTCA
AACACAACAAGCAAACTCTTCACTATTCAGTTCTAGTATTGGTCAACAGT
TACCTACAAGTAGTTTCACCACGTCACAAAGCGCAACAAATCCATTAGCT
AATAATGGTTTGTCTGCTCTTCAAACTAACATATCAGGAGCCAATTCTAT
TGCTAACCTTGGTGGACTAAACAATATGGCTAATCTTGCAAGTATGACAG
GTTTAAGTTCTACTCAAGTTGCAGCAAACCCAGCGGTAGTTGCTGCTGCA
GCAGCAGCCTCGGGGCCACTTCAAAGCCTCCCAAATATTCCTACCTCCAA
TGTCAATAGGGCCCAGCCTAACATTTCTGCAGAGCAATGGCAAACTGCTT
ACTCAGGAGTCGAGCAATTTGTTGCTGCACTTCCACAAGCGTATCAAAAT
TTACAAAGGCAGAATGTCGCACAACCCCAAAAAGAAGGTCCTGATGGTTC
AAATCTGTTCATTTACCACCTTCCACCTGAATTTACCGATGCTGATCTGA
TGCAGACCTTTATGCCATTTGGAAATGTTCTCTCTGCTAAAGTCTTCATT
GACAAACCTACGTTGTTGAGCAAATGTTTTGgttttgtcAGTTTTGACAA
CCAACACAGTGCCAGGCAAGCTATTGAAGCAATGAATGGATTTAGTGTTG
GTTCCAAGCGGTTAAAGGTTCAGTTGAAGCGACCAaaagaccaaaacaaa
ccaTATTAAAAAAACATGCATG

Run BLAST on NCBI

transcript from alignment at scaffold_238:14115..20732-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00054029 ID=TCONS_00054029|Name=TCONS_00054029|organism=Clytia hemisphaerica|type=transcript|length=6618bp|location=Sequence derived from alignment at scaffold_238:14115..20732- (Clytia hemisphaerica)
TTCAGAAAAATATTTATGTGGTTTGTTTAGTTGTTTGTGGAGTAGCTTAT
TGTGTAGTGTAAAAAGCCAAATGTATTATGACTATTGATATGACAGCATC
AACAAATAATATTGGTATGGCCAAAGAGCCAGAAGCTTGTAAACTGTTTA
TTGGACAAGTACCCAGAACATGGACTGAAAAAGAACTGAAACCTATATTC
GATCAATATGGTGAAATACATGACCTTACTGTGCTTCATGATAAATACAC
TGGTCAACATAAAGGTTATTATTGGAATTACTATATAAAATTTTGGCCAA
TTTAATCTAATTAATGTGTTGCACTTTCAAATTCTGTAATTCTTGTGTTG
TTGAATGATATCCTGGCTGGATGACAACACTGCCAACGCACTGAATTGCC
TTGTGATTTTATCCGGTGCTGAATAAAAGTATTTAAATTTCACCAGACAA
AATTGTGTTACAGTTTTTTAGGCCGGCCACACNAGCGTTTGGAAATTTTT
CCCGCTTACATCGGAATTATTAGTCAGGTAAAAAAGTTCAGACTGTCAAC
AAAGTGTTGAAAAACTTTATACTGTAAAACTTCGTGGATAATTTAGTTTG
TATTTCTCTTTCTCTTTCAGAAAAATATTTATGTGGTTTGTTTAGTTGTT
TGTGGAGTAGCTTATTGTGTAGTGTAAAAAGCCAAATGTATTATGACTAT
TGATATGACAGCATCAACAAATAATATTGGTATGGCCAAAGAGCCAGAAG
CTTGTAAACTGTTTATTGGACAAGTACCCAGAACATGGACTGAAAAAGAA
CTGAAACCTATATTCGATCAATATGGTGAAATACATGACCTTACTGTGCT
TCATGATAAATACACTGGTCAACATAAAGGTTATTATTGGAATTACTATA
TAAAATTTTGGCCAATTTAATCTAATTAATGTGTTGCACTTTCAAATTCT
GTAATTCTTGTGTTGTTGAATGATATCCTGGCTGGATGACAACACTGCCA
ACGCACTGAATTGCCTTGTGATTTTATCCGGTGCTGAATAAAAGTATTTA
AATTTCACCAGACAAAATTGTGTTACAGTTTTTTAGGCCGGCCACACCAA
TCACCACAAATAACTTGTGTTGTGTCGTCTGACCATCTGATAATTTTTCT
TAATTTTCCAATTATTTTGAGTCAAGAAGTTGCAAAATTGTCGGAATTTT
ATCCAATTCCATCCCACCCGCAATCTTTACATCAATCGCACGTTTCATTG
TTTTGGGCCATTCCAGAAAATTTTTGTTACCCCACGTCAGACGACGTGCA
TTTTTTAATTTTTTCTAGCCTCAGAAATTTTTTTTTTTCCAGTGGTGGTC
GGAAATTCCGATAAAAATCCATGTACTTTTGCAAAATGCATCGGAAATTC
CACTCTTTTTTGCCTTTTTTTAATTCAATTGCCTTGGAAATTCATACATT
TTCTTCTCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTCTCTCACCTTGGAAATTTCGAATTTTGGTGAAAACTTTTGCCCT
CGGAAATCCTGTGTCGTCCGCCCCCCTGTTACAGACAAATTCTGGAATGG
CCCTTTACGGAAGAATTTTATTTATAAATATAAACAGAGATAATATCCAA
TCCTTTCCGTGAACGTGTTATTATCTCCTTAGTCATAAAACAGAGATACC
ATATTTCAAAAAAAGAGGGGCTGTATCGTGATCACATGAAATCCAAGAAA
GGGCCACAGTTGACGGACCGTCTACATAAACAAGAAGACAGTGGGCCGTT
TATTTTCAATTTTCGATAGATTTGATTTCTGCCTGATTGATAGTTTGAAA
ATCCATTTTTCCGACGTTATTTTCACTGACCGAATCTGACCGAATGACTC
CATTTTTATTGCCTAAAACGACGCGAACACAAGTTATTTGCGATTCTGGC
CTTACACCAATTCTTGACACCAGACTTTTTTGTTACTGTTTGCGCGCTCA
TTGGATTGATCCACATCCATGTGCCAGGTTTAGATTGTCCAGAGATAAAA
AGTTTCATCCTTCAACACTTGGCATTAGGATAAGCCTGGTGCTTCAGTCT
GTTGTGTTGGCAGGATTGTCTATCATGCAAAATCATTTTGCCAAATTGGT
TGCAGTCAGATTGCATAGGAAAATATGCAAAACCTATGCAAAGAGAATAA
TCAGAATATTATTAGCATTAAAGAAAAGCAACAACCTAAACTCAACTGCT
TGACTTTTACCCTTCTTGACAAAGAAATAATCAGAAAAAAGTGTCACAAG
AGCCTTGGGTCTTGAGAACTGAAAATTGTTCAGTAATTTTATGAATTTCA
CTGCTGGTTTTTCTTCTTTCATATCTATAATTTATTAAATTAAAGTATTT
TTTTTTTCAGGATGTGCATTTTTAACATACTATGAGAAAGAATCAGCCCA
GCAAGCACAAAATGAACTTCATGAAAAAAAGACACTTCCAGGGGTAAGAA
TTCTGCTCAGGTTACAGTAATATTGTCCATTATTTTAAGATTGATAATAT
TATAAGATATATAATATTAGTTTGTACACACTTTTGAATCTTGAAAGGTA
TATACAGTGACAATATTCATTTTACTCAAGCAGGTTCTACTCTAACTATA
TCGACTTTCTTACTTATCTTCTAGTGTGGCCATGCAATGCAAGTCAAACC
TGCAGTATCAGAGACGAAAACTGAAGATAGAAAATTATTCATTGGAATGT
TATCCAAGAAATTAAATGAAGAAGACCTAAGAGTTATGTTTTCCCCCTTT
GGAACGATAGAAGAACTGACAGTTTTGAAAAATCCTGATGGAACTAGTAA
AGGTAAAATTGTTTTGTTTGTGTCTGTTTTATTTACAAGGTTTTTTTTCA
AAATGTGGTCTAATGGACCCTGTTGGGTCCTTTATGACCCTGTCTAATGG
TGGTATATCTCTGATCATTCTAGAAAATTTAATAACATTTTTATTAACAT
TGTAAATGTTGAAATGATGAATGTCTTCTTTTTTATCTAGGTTGTTCATT
CATCAAATATGCAAACAGATTACAAGCACAAAATGCTATTAGAAAGTTGC
ACGGCTCTCAGACTATGGAGGTATGAATTCTTCATTGACTCACTAATTCC
AACTTTTGCAATAAGTTGATATACTAAATCTAGCTTTATCTTACATTTTG
GTATTGAAGAAATTAGATTTTGACTGTAGGTATTTTACTTTACCCTTTGA
TCAAATATGTATACATTATTACAATCTTTTCAGGGATGCTCTTCACCTCT
TGTTGTTAAAATTGCTGATACAGAAAAGGACAAATTGCAAAAACGTATGC
AAGCTATGGCAACTAATTTAGTCGGACTTGGTATGACAATGAGCCAATTT
GGAATGCCTGGAGGCTTAATAAACAATGCATATCCTAATGTAGGACAAAA
TAATGCATATCAACAACTTTTAACACAAATGGCAATGCCAAATACACCTG
TTCCAGCTCAGCTTGTTAGTAATCCTGGATTCGCTAATATGAACAATAAC
ACTTTACCAAATGGTGTCAGTGCTGCTCTCGTGGCTGCAATGGCAAACCA
GCAACAACAACAATTACAAGGACTTACTCAAACACAACAAGCAAACTCTT
CACTATTCAGTTCTAGTATTGGTCAACAGTTACCTACAAGTAGTTTCACC
ACGTCACAAAGCGCAACAAATCCATTAGCTAATAATGGTTTGTCTGCTCT
TCAAACTAACATATCAGGTATGACATTGTTTGAATTTTGAATTAGATAAG
ATTGATTCAATAATGATTGAAAAATGTTAATAAACAGTGCTTTAGTATAG
AGGTAGAGTATTGGGATATGCTGCATAAGGTTTTTGGTTTGATCTCCAGC
CGGGCAAGTGGTCATATCAAATATTCCCAAAATGGTCCTTGATGCCTCTC
TGCTTGATGCTCAGTAACTAAAGAGAAGGGTCAAGAGTAAGTAAATAAAT
CCTGGGAAAAGAGCGGTATCGCCCTGTGGTTGCAACTTTCTTTCTACTAT
TAATAAACCTGAATAAACAATTTAACTTAGTTAAACAGGGAATGTAAGCA
AGCTCCTTTTGATTCTGTTTGATTTAACAATTTATATGAGACAGAATGAG
TTGGGGTATAAGCAGATAAAGCCTAAACTCTAGTACTTTTTTTCCCTTAG
GAGCCAATTCTATTGCTAACCTTGGTGGACTAAACAATATGGCTAATCTT
GCAAGTATGACAGGTTTAAGTTCTACTCAAGTTGCAGCAAACCCAGCGGT
AGTTGCTGCTGCAGCAGCAGCCTCGGGGCCACTTCAAAGCCTCCCAAATA
TTCCTACCTCCAATGTCAATAGGGCCNATTTGGAATGCCTGGAGGCTTAA
TAAACAATGCATATCCTAATGTAGGACAAAATAATGCATATCAACAACTT
TTAACACAAATGGCAATGCCAAATACACCTGTTCCAGCTCAGCTTGTTAG
TAATCCTGGATTCGCTAATATGAACAATAACACTTTACCAAATGGTGTCA
GTGCTGCTCTCGTGGCTGCAATGGCAAACCAGCAACAACAACAATTACAA
GGACTTACTCAAACACAACAAGCAAACTCTTCACTATTCAGTTCTAGTAT
TGGTCAACAGTTACCTACAAGTAGTTTCACCACGTCACAAAGCGCAACAA
ATCCATTAGCTAATAATGGTTTGTCTGCTCTTCAAACTAACATATCAGGT
ATGACATTGATTCAATAATGATTGAAAAATGTTAATAAACAGTGCTTTAG
TATAGAGGTAGAGCATTGGGATACGCTGCATAAGGTTTTTGGTTTGATCT
CCAGCCGGGCAAGTGGTCATATCAAATATTCCCAAAATGGTCCTTGATGC
CTCTCTGCTTGATGCTCAGTAACTAAAGAGAAGGGTCAAGAGTAAGTAAA
TAAATCCTGGGAAAAGAGCGGTATCGCCCTGTGGTTGCAACTTTCTTTCT
ACTATTAATAAACCTGAATAAACAATTTAACTTAGTTAAACAGGGAATGT
AAGCAAGCTCCTTTTGATTCTGTTTGATTTAACAATTTATATGAGACAGA
ATGAGTTGGGGTATAAGCAGATAAAGCCTAAACTCTAGTACTTTTTTTCC
CTTAGGAGCCAATTCTATTGCTAACCTTGGTGGACTAAACAATATGGCTA
ATCTTGCAAGTATGACAGGTTTAAGTTCTACTCAAGTTGCAGCAAACCCA
GCGGTAGTTGCTGCTGCAGCAGCAGCCTCGGGGCCACTTCAAAGCCTCCC
AAATATTCCTACCTCCAATGTCAATAGGGCCCAGCCTAACATTTCTGCAG
AGCAATGGCAAACTGCTTACTCAGGAGTCGAGCAATTTGTTGGTAAGACT
GTCAAACAAACAGTCTTATCAAGTGCATAGGAAATGTGTCAAAAACTTCT
TGTTTATTTTGAAGATTTATCATCTTTGTGTTGTTGCTTTTCATTTCTTT
CTGTTTTGTCATGTTGTTTTTATTGTATGTTATAAATTATGTGTGCACAA
GAAGTTGGGAGTTGCGTGCAAGAAGTGTGGAAATTTTAAAATATTGATTT
TGCATTCAAGCTACTTTTCACATTTTTGTTCAGCAACTTTCATAATGTAT
GTCATTGTCTTATGCATTTGATAAGTGTTTGTCTTTGTCCTGTTTTTGTC
TAATTGTATTGATGACCTTCAATGACCATTTAAAAAAAAGGAGGGATGTG
TAAATGATTTCCCTGTATATTTAAAGTAGATATTATTCATAGTTCTAGAT
GAGGGTTGATATGTATCATTTCCATTATATTTCTGCTACTTCAACTAGCA
ATTCTTATTTGATCATGTGAGAATTATGCAAACCTATACTTTCTAATGTT
GACTCTTTGTAGAGCTTTATTCTTTAGATTTTTATGTGCTTACTTTGAAT
TCGGTATTTCTAAATCTTGTTTATTTTTAATTAAAGCTGCACTTCCACAA
GCGTATCAAAATTTACAAAGGCAGAATGTCGCACAACCCCAAAAAGAAGG
TTAATTGTTATTTTGTCTGTTTTATTTTGAATGACTTTATTTTTCTATTT
AAAGTTAATTGTTATTACTGGCAAGAACCTTATTGATCATGTTGATTTTT
ATTTGCTTTCAGGTCCTGATGGTTCAAATCTGTTCATTTACCACCTTCCA
CCTGAATTTACCGATGCTGATCTGATGCAGACCTTTATGCCATTTGGAAA
TGTTCTCTCTGCTAAAGTCTTCATTGACAAACCTACGTTGTTGAGCAAAT
GTTTTGGTAATTGTTATTTTATAAACACTTTATTTTTTTGTTGATCAGAT
GAAATTAATAGTTTGTGAATAGCACTCATATTTTTTCATTGTGTTACTTG
TAAATTATCCTTTTTAAACTTTAGCACATGTATCATTTTGTAACTTGCAA
TGTTTTGTAATGTTTACTTTTTTTCAGGTTTTGTCAGTTTTGACAACCAA
CACAGTGCCAGGCAAGCTATTGAAGCAATGAATGGATTTAGTGTTGGTTC
CAAGCGGTTAAAGGTTCAGTTGAAGCGACCAAAAGACCAAAACAAACCAT
ATTAAAAAAACATGCATG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034108	XLOC_034108	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_238	supercontig	scaffold_238:14115..20732 -

Expression

No biomaterial libraries express this feature.

Blast

[Close]

BLAST of TCONS_00054029 vs. Swiss-Prot (Human)
Match: CELF3 (CUGBP Elav-like family member 3 OS=Homo sapiens GN=CELF3 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 3.145e-77
Identity = 120/201 (59.70%), Postives = 152/201 (75.62%), Query Frame = 3

Query:  123 KEPEACKLFIGQVPRTWTEKELKPIFDQYGEIHDLTVLHDKYTGQHKGCAFLTYYEKESAQQAQNELHEKKTLPGCGHAMQVKPAVSETKTEDRKLFIGMLSKKLNEEDLRVMFSPFGTIEELTVLKNPDGTSKGCSFIKYANRLQAQNAIRKLHGSQTMEGCSSPLVVKIADTEKDKLQKRMQAMATNLVGLGMTMSQFG 725
            KEP+A KLF+GQ+PR   EK+LKPIF+Q+G I +LTV+ DKYTG HKGCAFLTY  ++SA +AQ+ LHE+KTLPG    +QVKPA SE++ EDRKLF+GML K+  +ED+R MF PFGTI+E TVL+ PDGTSKGC+F+K+    +AQ AI  LH S+T+ G SS LVVK ADTEK++  +RMQ +AT L        QFG
Sbjct:    2 KEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFG 202

HSP 2 Score: 155.992 bits (393), Expect = 1.207e-40
Identity = 79/156 (50.64%), Postives = 100/156 (64.10%), Query Frame = 2

Query: 1817 PNISAEQWQTAYSGVEQFVAALPQAYQNLQRQNVAQP--------------------------QKEGPDGSNLFIYHLPPEFTDADLMQTFMPFGNVLSAKVFIDKPTLLSKCFGFVSFDNQHSARQAIEAMNGFSVGSKRLKVQLKRPKDQNKPY 2206
            P    +  Q AY+G++ + AA P AY +L      QP                          Q+EGPDG N+FIYHLP EFTD++++Q F+PFG+V+SAKVF+D+ T  SKCFGFVSFDN  SA+ AI+AMNGF +G KRLKVQLKRPKD N+PY
Sbjct:  311 PAAPVDPLQQAYAGMQHYTAAYPAAY-SLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 465

The following BLAST results are available for this feature:

BLAST of TCONS_00054029 vs. Swiss-Prot (Human)

BLAST of TCONS_00054029 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CELF3	3.145e-77	59.70	CUGBP Elav-like family member 3 OS=Homo sapiens GN...	[more]

You are here

TCONS_00054029 (transcript) - C. hemisphaerica