TCONS_00054029 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054029
Unique NameTCONS_00054029
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2222

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054029 ID=TCONS_00054029|Name=TCONS_00054029|organism=Clytia hemisphaerica|type=transcript|length=2222bp
ttcagaaaaatatttatgtGGTTTGTTTAGTTGTTTGTGGAGTAGCTTAT
TGTGTAGTGTAAAAAGCCAAATGTATTATGACTATTGATATGACAGCATC
AACAAATAATATTGGTATGGCCAAAGAGCCAGAAGCTTGTAAACTGTTTA
TTGGACAAGTACCCAGAACATGGACTGAAAAAGAACTGAAACCTATATTC
GATCAATATGGTGAAATACATGACCTTACTGTGCTTCATGATAAATACAC
TGGTCAACATAAAGgatgtGCATTTTTAACATACTATGAGAAAGAATCAG
CCCAGCAAGCACAAAATGAACTTCATGAAAAAAAGACACTTCCAGGGTGT
GGCCATGCAATGCAAGTCAAACCTGCAGTATCAGAGACGAAAACTGAAGA
TAGAAAATTATTCATTGGAATGTTATCCaagaaattaaatgaagaagacc
TAAGAGTTATGTTTTCCCCCTTTGGAACGATAGAAGAACTGACAGTTTTG
AAAAATCCTGATGGAACTAGTAAAgGTTGTTCATTCATCAAATATGCAAA
CAGATTACAAGCACAAAATGCTATTAGAAAGTTGCACGGCTCTCAGACTA
TGGAGGGATGCTCTTCACCTCTTGTTGTTAAAATTGCTGATACAGAAAAG
GACAAATTGCAAAAACGTATGCAAGCTATGGCAACTAATTTAGTCGGACT
TGGTATGACAATGAGCCAATTTGGAATGCCTGGAGGCTTAATAAACAATG
CATATCCTAATGTAGGACAAAATAATGCATATCAACAACTTTTAACACAA
ATGGCAATGCCAAATACACCTGTTCCAGCTCAGCTTGTTAGTAATCCTGG
ATTCGCTAATATGAACAATAACACTTTACCAAATGGTGTCAGTGCTGCTC
TCGTGGCTGCAATGGCAaaccagcaacaacaacaattaCAAGGACTTACT
CAAACACAACAAGCAAACTCTTCACTATTCAGTTCTAGTATTGGTCAACA
GTTACCTACAAGTAGTTTCACCACGTCACAAAGCGCAACAAATCCATTAG
CTAATAATGGTTTGTCTGCTCTTCAAACTAACATATCAGGAGCCAATTCT
ATTGCTAACCTTGGTGGACTAAACAATATGGCTAATCTTGCAAGTATGAC
AGGTTTAAGTTCTACTCAAGTTGCAGCAAACCCAGCGGTAGTTGCTGCTG
CAGCAGCAGCCTCGGGGCCACTTCAAAGCCTCCCAAATATTCCTACCTCC
AATGTCAATAGGGCCNATTTGGAATGCCTGGAGGCTTAATAAACAATGCA
TATCCTAATGTAGGACAAAATAATGCATATCAACAACTTTTAACACAAAT
GGCAATGCCAAATACACCTGTTCCAGCTCAGCTTGTTAGTAATCCTGGAT
TCGCTAATATGAACAATAACACTTTACCAAATGGTGTCAGTGCTGCTCTC
GTGGCTGCAATGGCAaaccagcaacaacaacaattaCAAGGACTTACTCA
AACACAACAAGCAAACTCTTCACTATTCAGTTCTAGTATTGGTCAACAGT
TACCTACAAGTAGTTTCACCACGTCACAAAGCGCAACAAATCCATTAGCT
AATAATGGTTTGTCTGCTCTTCAAACTAACATATCAGGAGCCAATTCTAT
TGCTAACCTTGGTGGACTAAACAATATGGCTAATCTTGCAAGTATGACAG
GTTTAAGTTCTACTCAAGTTGCAGCAAACCCAGCGGTAGTTGCTGCTGCA
GCAGCAGCCTCGGGGCCACTTCAAAGCCTCCCAAATATTCCTACCTCCAA
TGTCAATAGGGCCCAGCCTAACATTTCTGCAGAGCAATGGCAAACTGCTT
ACTCAGGAGTCGAGCAATTTGTTGCTGCACTTCCACAAGCGTATCAAAAT
TTACAAAGGCAGAATGTCGCACAACCCCAAAAAGAAGGTCCTGATGGTTC
AAATCTGTTCATTTACCACCTTCCACCTGAATTTACCGATGCTGATCTGA
TGCAGACCTTTATGCCATTTGGAAATGTTCTCTCTGCTAAAGTCTTCATT
GACAAACCTACGTTGTTGAGCAAATGTTTTGgttttgtcAGTTTTGACAA
CCAACACAGTGCCAGGCAAGCTATTGAAGCAATGAATGGATTTAGTGTTG
GTTCCAAGCGGTTAAAGGTTCAGTTGAAGCGACCAaaagaccaaaacaaa
ccaTATTAAAAAAACATGCATG
Run BLAST on NCBI

transcript from alignment at scaffold_238:14115..20732-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054029 ID=TCONS_00054029|Name=TCONS_00054029|organism=Clytia hemisphaerica|type=transcript|length=6618bp|location=Sequence derived from alignment at scaffold_238:14115..20732- (Clytia hemisphaerica)
TTCAGAAAAATATTTATGTGGTTTGTTTAGTTGTTTGTGGAGTAGCTTAT TGTGTAGTGTAAAAAGCCAAATGTATTATGACTATTGATATGACAGCATC AACAAATAATATTGGTATGGCCAAAGAGCCAGAAGCTTGTAAACTGTTTA TTGGACAAGTACCCAGAACATGGACTGAAAAAGAACTGAAACCTATATTC GATCAATATGGTGAAATACATGACCTTACTGTGCTTCATGATAAATACAC TGGTCAACATAAAGGTTATTATTGGAATTACTATATAAAATTTTGGCCAA TTTAATCTAATTAATGTGTTGCACTTTCAAATTCTGTAATTCTTGTGTTG TTGAATGATATCCTGGCTGGATGACAACACTGCCAACGCACTGAATTGCC TTGTGATTTTATCCGGTGCTGAATAAAAGTATTTAAATTTCACCAGACAA AATTGTGTTACAGTTTTTTAGGCCGGCCACACNAGCGTTTGGAAATTTTT CCCGCTTACATCGGAATTATTAGTCAGGTAAAAAAGTTCAGACTGTCAAC AAAGTGTTGAAAAACTTTATACTGTAAAACTTCGTGGATAATTTAGTTTG TATTTCTCTTTCTCTTTCAGAAAAATATTTATGTGGTTTGTTTAGTTGTT TGTGGAGTAGCTTATTGTGTAGTGTAAAAAGCCAAATGTATTATGACTAT TGATATGACAGCATCAACAAATAATATTGGTATGGCCAAAGAGCCAGAAG CTTGTAAACTGTTTATTGGACAAGTACCCAGAACATGGACTGAAAAAGAA CTGAAACCTATATTCGATCAATATGGTGAAATACATGACCTTACTGTGCT TCATGATAAATACACTGGTCAACATAAAGGTTATTATTGGAATTACTATA TAAAATTTTGGCCAATTTAATCTAATTAATGTGTTGCACTTTCAAATTCT GTAATTCTTGTGTTGTTGAATGATATCCTGGCTGGATGACAACACTGCCA ACGCACTGAATTGCCTTGTGATTTTATCCGGTGCTGAATAAAAGTATTTA AATTTCACCAGACAAAATTGTGTTACAGTTTTTTAGGCCGGCCACACCAA TCACCACAAATAACTTGTGTTGTGTCGTCTGACCATCTGATAATTTTTCT TAATTTTCCAATTATTTTGAGTCAAGAAGTTGCAAAATTGTCGGAATTTT ATCCAATTCCATCCCACCCGCAATCTTTACATCAATCGCACGTTTCATTG TTTTGGGCCATTCCAGAAAATTTTTGTTACCCCACGTCAGACGACGTGCA TTTTTTAATTTTTTCTAGCCTCAGAAATTTTTTTTTTTCCAGTGGTGGTC GGAAATTCCGATAAAAATCCATGTACTTTTGCAAAATGCATCGGAAATTC CACTCTTTTTTGCCTTTTTTTAATTCAATTGCCTTGGAAATTCATACATT TTCTTCTCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNTTCTCTCACCTTGGAAATTTCGAATTTTGGTGAAAACTTTTGCCCT CGGAAATCCTGTGTCGTCCGCCCCCCTGTTACAGACAAATTCTGGAATGG CCCTTTACGGAAGAATTTTATTTATAAATATAAACAGAGATAATATCCAA TCCTTTCCGTGAACGTGTTATTATCTCCTTAGTCATAAAACAGAGATACC ATATTTCAAAAAAAGAGGGGCTGTATCGTGATCACATGAAATCCAAGAAA GGGCCACAGTTGACGGACCGTCTACATAAACAAGAAGACAGTGGGCCGTT TATTTTCAATTTTCGATAGATTTGATTTCTGCCTGATTGATAGTTTGAAA ATCCATTTTTCCGACGTTATTTTCACTGACCGAATCTGACCGAATGACTC CATTTTTATTGCCTAAAACGACGCGAACACAAGTTATTTGCGATTCTGGC CTTACACCAATTCTTGACACCAGACTTTTTTGTTACTGTTTGCGCGCTCA TTGGATTGATCCACATCCATGTGCCAGGTTTAGATTGTCCAGAGATAAAA AGTTTCATCCTTCAACACTTGGCATTAGGATAAGCCTGGTGCTTCAGTCT GTTGTGTTGGCAGGATTGTCTATCATGCAAAATCATTTTGCCAAATTGGT TGCAGTCAGATTGCATAGGAAAATATGCAAAACCTATGCAAAGAGAATAA TCAGAATATTATTAGCATTAAAGAAAAGCAACAACCTAAACTCAACTGCT TGACTTTTACCCTTCTTGACAAAGAAATAATCAGAAAAAAGTGTCACAAG AGCCTTGGGTCTTGAGAACTGAAAATTGTTCAGTAATTTTATGAATTTCA CTGCTGGTTTTTCTTCTTTCATATCTATAATTTATTAAATTAAAGTATTT TTTTTTTCAGGATGTGCATTTTTAACATACTATGAGAAAGAATCAGCCCA GCAAGCACAAAATGAACTTCATGAAAAAAAGACACTTCCAGGGGTAAGAA TTCTGCTCAGGTTACAGTAATATTGTCCATTATTTTAAGATTGATAATAT TATAAGATATATAATATTAGTTTGTACACACTTTTGAATCTTGAAAGGTA TATACAGTGACAATATTCATTTTACTCAAGCAGGTTCTACTCTAACTATA TCGACTTTCTTACTTATCTTCTAGTGTGGCCATGCAATGCAAGTCAAACC TGCAGTATCAGAGACGAAAACTGAAGATAGAAAATTATTCATTGGAATGT TATCCAAGAAATTAAATGAAGAAGACCTAAGAGTTATGTTTTCCCCCTTT GGAACGATAGAAGAACTGACAGTTTTGAAAAATCCTGATGGAACTAGTAA AGGTAAAATTGTTTTGTTTGTGTCTGTTTTATTTACAAGGTTTTTTTTCA AAATGTGGTCTAATGGACCCTGTTGGGTCCTTTATGACCCTGTCTAATGG TGGTATATCTCTGATCATTCTAGAAAATTTAATAACATTTTTATTAACAT TGTAAATGTTGAAATGATGAATGTCTTCTTTTTTATCTAGGTTGTTCATT CATCAAATATGCAAACAGATTACAAGCACAAAATGCTATTAGAAAGTTGC ACGGCTCTCAGACTATGGAGGTATGAATTCTTCATTGACTCACTAATTCC AACTTTTGCAATAAGTTGATATACTAAATCTAGCTTTATCTTACATTTTG GTATTGAAGAAATTAGATTTTGACTGTAGGTATTTTACTTTACCCTTTGA TCAAATATGTATACATTATTACAATCTTTTCAGGGATGCTCTTCACCTCT TGTTGTTAAAATTGCTGATACAGAAAAGGACAAATTGCAAAAACGTATGC AAGCTATGGCAACTAATTTAGTCGGACTTGGTATGACAATGAGCCAATTT GGAATGCCTGGAGGCTTAATAAACAATGCATATCCTAATGTAGGACAAAA TAATGCATATCAACAACTTTTAACACAAATGGCAATGCCAAATACACCTG TTCCAGCTCAGCTTGTTAGTAATCCTGGATTCGCTAATATGAACAATAAC ACTTTACCAAATGGTGTCAGTGCTGCTCTCGTGGCTGCAATGGCAAACCA GCAACAACAACAATTACAAGGACTTACTCAAACACAACAAGCAAACTCTT CACTATTCAGTTCTAGTATTGGTCAACAGTTACCTACAAGTAGTTTCACC ACGTCACAAAGCGCAACAAATCCATTAGCTAATAATGGTTTGTCTGCTCT TCAAACTAACATATCAGGTATGACATTGTTTGAATTTTGAATTAGATAAG ATTGATTCAATAATGATTGAAAAATGTTAATAAACAGTGCTTTAGTATAG AGGTAGAGTATTGGGATATGCTGCATAAGGTTTTTGGTTTGATCTCCAGC CGGGCAAGTGGTCATATCAAATATTCCCAAAATGGTCCTTGATGCCTCTC TGCTTGATGCTCAGTAACTAAAGAGAAGGGTCAAGAGTAAGTAAATAAAT CCTGGGAAAAGAGCGGTATCGCCCTGTGGTTGCAACTTTCTTTCTACTAT TAATAAACCTGAATAAACAATTTAACTTAGTTAAACAGGGAATGTAAGCA AGCTCCTTTTGATTCTGTTTGATTTAACAATTTATATGAGACAGAATGAG TTGGGGTATAAGCAGATAAAGCCTAAACTCTAGTACTTTTTTTCCCTTAG GAGCCAATTCTATTGCTAACCTTGGTGGACTAAACAATATGGCTAATCTT GCAAGTATGACAGGTTTAAGTTCTACTCAAGTTGCAGCAAACCCAGCGGT AGTTGCTGCTGCAGCAGCAGCCTCGGGGCCACTTCAAAGCCTCCCAAATA TTCCTACCTCCAATGTCAATAGGGCCNATTTGGAATGCCTGGAGGCTTAA TAAACAATGCATATCCTAATGTAGGACAAAATAATGCATATCAACAACTT TTAACACAAATGGCAATGCCAAATACACCTGTTCCAGCTCAGCTTGTTAG TAATCCTGGATTCGCTAATATGAACAATAACACTTTACCAAATGGTGTCA GTGCTGCTCTCGTGGCTGCAATGGCAAACCAGCAACAACAACAATTACAA GGACTTACTCAAACACAACAAGCAAACTCTTCACTATTCAGTTCTAGTAT TGGTCAACAGTTACCTACAAGTAGTTTCACCACGTCACAAAGCGCAACAA ATCCATTAGCTAATAATGGTTTGTCTGCTCTTCAAACTAACATATCAGGT ATGACATTGATTCAATAATGATTGAAAAATGTTAATAAACAGTGCTTTAG TATAGAGGTAGAGCATTGGGATACGCTGCATAAGGTTTTTGGTTTGATCT CCAGCCGGGCAAGTGGTCATATCAAATATTCCCAAAATGGTCCTTGATGC CTCTCTGCTTGATGCTCAGTAACTAAAGAGAAGGGTCAAGAGTAAGTAAA TAAATCCTGGGAAAAGAGCGGTATCGCCCTGTGGTTGCAACTTTCTTTCT ACTATTAATAAACCTGAATAAACAATTTAACTTAGTTAAACAGGGAATGT AAGCAAGCTCCTTTTGATTCTGTTTGATTTAACAATTTATATGAGACAGA ATGAGTTGGGGTATAAGCAGATAAAGCCTAAACTCTAGTACTTTTTTTCC CTTAGGAGCCAATTCTATTGCTAACCTTGGTGGACTAAACAATATGGCTA ATCTTGCAAGTATGACAGGTTTAAGTTCTACTCAAGTTGCAGCAAACCCA GCGGTAGTTGCTGCTGCAGCAGCAGCCTCGGGGCCACTTCAAAGCCTCCC AAATATTCCTACCTCCAATGTCAATAGGGCCCAGCCTAACATTTCTGCAG AGCAATGGCAAACTGCTTACTCAGGAGTCGAGCAATTTGTTGGTAAGACT GTCAAACAAACAGTCTTATCAAGTGCATAGGAAATGTGTCAAAAACTTCT TGTTTATTTTGAAGATTTATCATCTTTGTGTTGTTGCTTTTCATTTCTTT CTGTTTTGTCATGTTGTTTTTATTGTATGTTATAAATTATGTGTGCACAA GAAGTTGGGAGTTGCGTGCAAGAAGTGTGGAAATTTTAAAATATTGATTT TGCATTCAAGCTACTTTTCACATTTTTGTTCAGCAACTTTCATAATGTAT GTCATTGTCTTATGCATTTGATAAGTGTTTGTCTTTGTCCTGTTTTTGTC TAATTGTATTGATGACCTTCAATGACCATTTAAAAAAAAGGAGGGATGTG TAAATGATTTCCCTGTATATTTAAAGTAGATATTATTCATAGTTCTAGAT GAGGGTTGATATGTATCATTTCCATTATATTTCTGCTACTTCAACTAGCA ATTCTTATTTGATCATGTGAGAATTATGCAAACCTATACTTTCTAATGTT GACTCTTTGTAGAGCTTTATTCTTTAGATTTTTATGTGCTTACTTTGAAT TCGGTATTTCTAAATCTTGTTTATTTTTAATTAAAGCTGCACTTCCACAA GCGTATCAAAATTTACAAAGGCAGAATGTCGCACAACCCCAAAAAGAAGG TTAATTGTTATTTTGTCTGTTTTATTTTGAATGACTTTATTTTTCTATTT AAAGTTAATTGTTATTACTGGCAAGAACCTTATTGATCATGTTGATTTTT ATTTGCTTTCAGGTCCTGATGGTTCAAATCTGTTCATTTACCACCTTCCA CCTGAATTTACCGATGCTGATCTGATGCAGACCTTTATGCCATTTGGAAA TGTTCTCTCTGCTAAAGTCTTCATTGACAAACCTACGTTGTTGAGCAAAT GTTTTGGTAATTGTTATTTTATAAACACTTTATTTTTTTGTTGATCAGAT GAAATTAATAGTTTGTGAATAGCACTCATATTTTTTCATTGTGTTACTTG TAAATTATCCTTTTTAAACTTTAGCACATGTATCATTTTGTAACTTGCAA TGTTTTGTAATGTTTACTTTTTTTCAGGTTTTGTCAGTTTTGACAACCAA CACAGTGCCAGGCAAGCTATTGAAGCAATGAATGGATTTAGTGTTGGTTC CAAGCGGTTAAAGGTTCAGTTGAAGCGACCAAAAGACCAAAACAAACCAT ATTAAAAAAACATGCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034108XLOC_034108Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054029-exon-scaffold_238-1575043694:20514..20732TCONS_00054029-exon-scaffold_238-1575043694:20514..20732Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1575043694:19854..19898TCONS_00054029-exon-scaffold_238-1575043694:19854..19898Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1575043694:18240..18322TCONS_00054029-exon-scaffold_238-1575043694:18240..18322Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1575043694:17881..18058TCONS_00054029-exon-scaffold_238-1575043694:17881..18058Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1575043694:17613..17692TCONS_00054029-exon-scaffold_238-1575043694:17613..17692Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1575043694:16966..17449TCONS_00054029-exon-scaffold_238-1575043694:16966..17449Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1575043694:15985..16532TCONS_00054029-exon-scaffold_238-1575043694:15985..16532Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1575043694:15341..15577TCONS_00054029-exon-scaffold_238-1575043694:15341..15577Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1575043694:14684..14746TCONS_00054029-exon-scaffold_238-1575043694:14684..14746Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1575043694:14427..14570TCONS_00054029-exon-scaffold_238-1575043694:14427..14570Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1575043694:14115..14255TCONS_00054029-exon-scaffold_238-1575043694:14115..14255Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1510915933:20514..20732TCONS_00054029-exon-scaffold_238-1510915933:20514..20732Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1510915933:19854..19898TCONS_00054029-exon-scaffold_238-1510915933:19854..19898Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1510915933:18240..18322TCONS_00054029-exon-scaffold_238-1510915933:18240..18322Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1510915933:17881..18058TCONS_00054029-exon-scaffold_238-1510915933:17881..18058Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1510915933:17613..17692TCONS_00054029-exon-scaffold_238-1510915933:17613..17692Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1510915933:16966..17449TCONS_00054029-exon-scaffold_238-1510915933:16966..17449Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1510915933:15985..16532TCONS_00054029-exon-scaffold_238-1510915933:15985..16532Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1510915933:15341..15577TCONS_00054029-exon-scaffold_238-1510915933:15341..15577Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1510915933:14684..14746TCONS_00054029-exon-scaffold_238-1510915933:14684..14746Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1510915933:14427..14570TCONS_00054029-exon-scaffold_238-1510915933:14427..14570Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1510915933:14115..14255TCONS_00054029-exon-scaffold_238-1510915933:14115..14255Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1491911889:20514..20732TCONS_00054029-exon-scaffold_238-1491911889:20514..20732Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1491911889:19854..19898TCONS_00054029-exon-scaffold_238-1491911889:19854..19898Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1491911889:18240..18322TCONS_00054029-exon-scaffold_238-1491911889:18240..18322Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1491911889:17881..18058TCONS_00054029-exon-scaffold_238-1491911889:17881..18058Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1491911889:17613..17692TCONS_00054029-exon-scaffold_238-1491911889:17613..17692Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1491911889:16966..17449TCONS_00054029-exon-scaffold_238-1491911889:16966..17449Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1491911889:15985..16532TCONS_00054029-exon-scaffold_238-1491911889:15985..16532Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1491911889:15341..15577TCONS_00054029-exon-scaffold_238-1491911889:15341..15577Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1491911889:14684..14746TCONS_00054029-exon-scaffold_238-1491911889:14684..14746Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1491911889:14427..14570TCONS_00054029-exon-scaffold_238-1491911889:14427..14570Clytia hemisphaericaexon
TCONS_00054029-exon-scaffold_238-1491911889:14115..14255TCONS_00054029-exon-scaffold_238-1491911889:14115..14255Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_238supercontigscaffold_238:14115..20732 -
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00054029 vs. Swiss-Prot (Human)
Match: CELF3 (CUGBP Elav-like family member 3 OS=Homo sapiens GN=CELF3 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 3.145e-77
Identity = 120/201 (59.70%), Postives = 152/201 (75.62%), Query Frame = 3
Query:  123 KEPEACKLFIGQVPRTWTEKELKPIFDQYGEIHDLTVLHDKYTGQHKGCAFLTYYEKESAQQAQNELHEKKTLPGCGHAMQVKPAVSETKTEDRKLFIGMLSKKLNEEDLRVMFSPFGTIEELTVLKNPDGTSKGCSFIKYANRLQAQNAIRKLHGSQTMEGCSSPLVVKIADTEKDKLQKRMQAMATNLVGLGMTMSQFG 725
            KEP+A KLF+GQ+PR   EK+LKPIF+Q+G I +LTV+ DKYTG HKGCAFLTY  ++SA +AQ+ LHE+KTLPG    +QVKPA SE++ EDRKLF+GML K+  +ED+R MF PFGTI+E TVL+ PDGTSKGC+F+K+    +AQ AI  LH S+T+ G SS LVVK ADTEK++  +RMQ +AT L        QFG
Sbjct:    2 KEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFG 202          

HSP 2 Score: 155.992 bits (393), Expect = 1.207e-40
Identity = 79/156 (50.64%), Postives = 100/156 (64.10%), Query Frame = 2
Query: 1817 PNISAEQWQTAYSGVEQFVAALPQAYQNLQRQNVAQP--------------------------QKEGPDGSNLFIYHLPPEFTDADLMQTFMPFGNVLSAKVFIDKPTLLSKCFGFVSFDNQHSARQAIEAMNGFSVGSKRLKVQLKRPKDQNKPY 2206
            P    +  Q AY+G++ + AA P AY +L      QP                          Q+EGPDG N+FIYHLP EFTD++++Q F+PFG+V+SAKVF+D+ T  SKCFGFVSFDN  SA+ AI+AMNGF +G KRLKVQLKRPKD N+PY
Sbjct:  311 PAAPVDPLQQAYAGMQHYTAAYPAAY-SLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 465          
The following BLAST results are available for this feature:
BLAST of TCONS_00054029 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CELF33.145e-7759.70CUGBP Elav-like family member 3 OS=Homo sapiens GN... [more]
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