Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054029 ID=TCONS_00054029|Name=TCONS_00054029|organism=Clytia hemisphaerica|type=transcript|length=2222bpRun BLAST on NCBI transcript from alignment at scaffold_238:14115..20732- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054029 ID=TCONS_00054029|Name=TCONS_00054029|organism=Clytia hemisphaerica|type=transcript|length=6618bp|location=Sequence derived from alignment at scaffold_238:14115..20732- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00054029 vs. Swiss-Prot (Human)
Match: CELF3 (CUGBP Elav-like family member 3 OS=Homo sapiens GN=CELF3 PE=1 SV=1) HSP 1 Score: 259.225 bits (661), Expect = 3.145e-77 Identity = 120/201 (59.70%), Postives = 152/201 (75.62%), Query Frame = 3 Query: 123 KEPEACKLFIGQVPRTWTEKELKPIFDQYGEIHDLTVLHDKYTGQHKGCAFLTYYEKESAQQAQNELHEKKTLPGCGHAMQVKPAVSETKTEDRKLFIGMLSKKLNEEDLRVMFSPFGTIEELTVLKNPDGTSKGCSFIKYANRLQAQNAIRKLHGSQTMEGCSSPLVVKIADTEKDKLQKRMQAMATNLVGLGMTMSQFG 725 KEP+A KLF+GQ+PR EK+LKPIF+Q+G I +LTV+ DKYTG HKGCAFLTY ++SA +AQ+ LHE+KTLPG +QVKPA SE++ EDRKLF+GML K+ +ED+R MF PFGTI+E TVL+ PDGTSKGC+F+K+ +AQ AI LH S+T+ G SS LVVK ADTEK++ +RMQ +AT L QFG Sbjct: 2 KEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFG 202 HSP 2 Score: 155.992 bits (393), Expect = 1.207e-40 Identity = 79/156 (50.64%), Postives = 100/156 (64.10%), Query Frame = 2 Query: 1817 PNISAEQWQTAYSGVEQFVAALPQAYQNLQRQNVAQP--------------------------QKEGPDGSNLFIYHLPPEFTDADLMQTFMPFGNVLSAKVFIDKPTLLSKCFGFVSFDNQHSARQAIEAMNGFSVGSKRLKVQLKRPKDQNKPY 2206 P + Q AY+G++ + AA P AY +L QP Q+EGPDG N+FIYHLP EFTD++++Q F+PFG+V+SAKVF+D+ T SKCFGFVSFDN SA+ AI+AMNGF +G KRLKVQLKRPKD N+PY Sbjct: 311 PAAPVDPLQQAYAGMQHYTAAYPAAY-SLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 465 The following BLAST results are available for this feature:
BLAST of TCONS_00054029 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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