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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054023 ID=TCONS_00054023|Name=TCONS_00054023|organism=Clytia hemisphaerica|type=transcript|length=2287bp
TTGATTGCTGATTGGTAATTCTGATTGGTATTTTTTGCGTGTATGTTCCT
GTGTTCCGTATTGCTGCTTGATAATTGGTTTTTTCCTCTTCAAAAAAGCT
TGTTTTTATGatttctgtaaaaattttagctttttattttttcacttttc
aaaaaatgtcaacatttattcatattttttttcgttttctgtccctgttt
ttctttttattattaccTCGTTGTCTTTttattatctttccaacgcgaAA
ACTCCCTGTgaccttttgttttgtttctttgatttgattttgatggtGTG
GACTTTTTAAGCGTGTGTCAATCTcaaaagtagataaaagatcTTGTGCT
CATGTTTTGTTCGTAGAAAAAAGGATCATATTGGATAATATTTAAgaaat
aatatatttttattggaCTACAAACATTTTTTGTATATACGAGACATATT
TATTGAAAACCAAGAGAAATATTGGCTGTgcgataaaaaaaaattttttt
agaaaagaaaaatgaacatGCAAAAGCCTGTTGGTGAATTGCTTAATCAC
GCCTCAATATTTTATAGAGTCACACCCATTTAAATGAGCTGTTAATTGAG
CCAATATGATTCGAAGCATTTTGATTTGCTGAACTTTACAGTAGTAGCAA
TTCCAGTACTGGTTTTTGAGTGTTCACCCTTTGATAACAATAGTGGTTGC
CTAGATAGTCGTTGCTAGTTTGTGATCATTAGAATTTTTATCATGAATTA
TATTCACTATAAAGAAATTCTTTCAGCTATTTTTTGCCAACtatatctta
aaatcttttaaaaaaaattagaagtgtgatcaaatttctcaaatttttgt
ttcatcgaATTTTCAATAAGATATTCCATTCAGCGACTATTTCTAGGCTC
TTTTTTGATCCACATGAAGATCCCATTTTGGCTCTTTATGAAACTTCCAA
AATTTTATATGATATACGAATTTTCTACATTAAGTTATTTGATAATatga
aataattaaaagaaaaagatattTATTAACAtatcatccaaaaaattatg
caaaacttaaaaaaaaatttagagtcgagtattttgatgaaaatgtagct
agtttttaccccctggtttatAGCAGAAAATGCAGGACATGTTGATAtta
atattttagaaattattttttctctaATACAGCACTCTTTTTTTGCTACG
ATTTTAGACGATTTACCTATAGCCATCTCAGGTTTTTGGACCAttgcatt
tcaaattttataatcaaaattttgacagTAATTTTCAGAAAGTTCATATT
CAAAAACCTGTCCGAACTCGTATCTGTGGCTTTGATTTTCTCTTTGTGTA
TAATTTTTATGgcagttgattttattattattttgtgaACGATTTTACGT
GGTCTggtttgtttttgttctttttttttgtttcctcgcaaaattttgtc
acttttccattttattattccataaaatagtgattttttttttgcaattt
gatATTAGACTAAAATAAAATAGGAAAAAACGTTCTGTAATTATATTTGA
ATTTTAGCATAAATGCAGTTGTTTTAAGGCTGTTCGTATTTTTTCACCCa
tttatcattaaaaaaattagtatGTTAATTAAGTTATTAGTAGTGAAAgc
acttttttgttatttttgtggttatgtcatttttcaaaagcCCCAATAAT
ATTTTGAGGTAgttttaatttgttttgtttcaatattttttttgatcgtc
ttattttcttcatttcatttGTTCTTTGTTTTGGATGCTATACTGAATTT
GCGCTGAATTCTCACTACAACTATTGACCTATTTTTCAAGCGAGAGCATT
GAGTTTCGATTAATTTGCGTATAGTTTGTAATGCTTTGTTGTCCTTAGTT
CCCAACATTTATATATTTCTTGACTGTTTTCTTATACGAGATGTGATAAA
CTAGAgaatgaatgaaataaaatgGAAAGATAGGACGTACTATAGGAAAA
ATATCATACAATTTGNaccttatcggggaaaacttcgtcggggaaaagtg
acgaaattttggacaagtgacgaatattttccccgacgaagttttccccg
ataaggtagtttgTAATGCTTTGTTGTCCTTAGTTTATATTCCCCAACAT
TTATATATTTCTTGACTGTTTTCTTATACGAGATGTGATAAACTAGAgaa
tgaatgaaataaaatgGAAAGATAGGACGTACTATAGGAAAAATATCATA
CAatttgttcacttttttttgctttccaTTCTACCGA Run BLAST on NCBI transcript from alignment at scaffold_238:9902..13947- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054023 ID=TCONS_00054023|Name=TCONS_00054023|organism=Clytia hemisphaerica|type=transcript|length=4046bp|location=Sequence derived from alignment at scaffold_238:9902..13947- (Clytia hemisphaerica)
TTGATTGCTGATTGGTAATTCTGGTAAGAGTGTTTTAAATTATAGTGAAT
TGGCTTGATTTGTTGTTTGGTGTTGTTTATGTTCCTATTATGACGATTAT
TATGGTATATATGTGCTGGTTGACAGCCATGCTGACATGCCTGATGTGTG
TTGTTTGAAATTTTGTTTTGTTCATTTTGAGTCAGATTCTTTTTTGTCTG
TCGGGCTCAATGAGATGCCATTGCAATTATTTTTTTTTCTTTTTCAAGAT
TCTATTATAAGTATGATGTAAATAAATGAATTCTGGTTGCCTGGTATCTC
TTGAGAATTTTTTTTGTTCGTCTGTTCACATTTTGTTTTAATATTTTTTC
TTTTAATCATCATTCTTGTTGACGTGTTTTTTTAATGTCGTGGCTATACA
TTTGGATCGTCTTTTATTATAGAAGGAAAAGAAATAGCTCTCGACTATTT
TTCATTAGTTTTTACATGCTACCTTGGAAACATTGAAAAGAAAAGATCTC
AAAAGAATATTTTCCCTTTCAGAAAGTAATTTCTCAGATGTGTTATAATT
TATATTGCAGATGTGTTAAAAAGTCGTAACCAAATGTTATAGCCCTTCTT
ACTGGATAGAGAACATTGTTTTAATAAAGCAAAATGTGATTTTTGATATT
TGTTAGTTGCTTGGCAACAAAATTGTTAGTCTTGATCTTCGTTATGTTTT
AAATTATTCTATGTTTGTTTGAAATTTTCAAAAAAAAACCCACTTTGCCT
TATTTTTAGGCATTCTCGTTGTATTTTTACCATAGATTGGTATTTTTTGC
GTGTATGTTCCTGTGTTCCGTATTGCTGCTTGATAATTGGTTTTTTCCTC
TTCAAAAAAGCTTGTTTTTATGATTTCTGTAAAAATTTTAGCTTTTTATT
TTTTCACTTTTCAAAAAATGTCAACATTTATTCATATTTTTTTTCGTTTT
CTGTCCCTGTTTTTCTTTTTATTATTACCTCGTTGTCTTTTTATTATCTT
TCCAACGCGAAAACTCCCTGTGACCTTTTGTTTTGTTTCTTTGATTTGAT
TTTGATGGTGTGGACTTTTTAAGCGTGTGTCAATCTCAAAAGTAGATAAA
AGATCTTGTGCTCATGTTTTGTTCGTAGAAAAAAGGATCATAATGGATAA
TATTTAAGAAATAATATATTTTTATTGGACTACAAACATTTTTTGTATAT
ACGAGACATATTTATTGAAAACCAAGACAAATATTGGCTGTGCGATAAAA
AAAAAATTTTTTTAGAAAAGAAAAATGAACATGCAAAAGCCTGTTGGTGA
ATTGCTTAATCACACCTCAATATTTTATAGAGTCACACCCATTTAAATGA
GCTGTTAATTGAGCCAATATGATTCGAAGCATTTTGATTTGCTTAACTTT
ACAGTAGTAGCAATTCCAGTACTGGTTTTTGAGTGTTCACCCTTTGATAA
CAATAGTGGTTGCCTGGATAGTCGTTGCTAGTTTGTGATCATTAGAATTT
TTATCATGAATTCTATACACTATAAAGAAATTCTTTCAGCTATTTTTTGC
CACCTATATCTTAAAATCTTTAAAAAAAAATTAGAAGTGTGATCAAATNT
GGATAGAGAACATTGTTTTAATAAAGCAAAATGTGATTTTTGATATTTGT
TAGTTGCTTGGCAACAAAATTGTTAGTCTTGATCTTCGTTATGTTTTAAA
TTATTCTATGTTTGTTTGAAATTTTCAAAAAAAAACCCACTTTGCCTTAT
TTTTAGGCATTCTCGTTGTATTTTTACCATAGATTGGTATTTTTTGCGTG
TATGTTCCTGTGTTCCGTATTGCTGCTTGATAATTGGTTTTTTCCTCTTC
AAAAAAGCTTGTTTTTATGATTTCTGTAAAAATTTTAGCTTTTTATTTTT
TCACTTTTCAAAAAATGTCAACATTTATTCATATTTTTTTTCGTTTTCTG
TCCCTGTTTTTCTTTTTATTATTACCTCGTTGTCTTTTTATTATCTTTCC
AACGCGAAAACTCCCTGTGACCTTTTGTTTTGTTTCTTTGATTTGATTTT
GATGGTGTGGACTTTTTAAGCGTGTGTCAATCTCAAAAGTAGATAAAAGA
TCTTGTGCTCATGTTTTGTTCGTAGAAAAAAGGATCATATTGGATAATAT
TTAAGAAATAATATATTTTTATTGGACTACAAACATTTTTTGTATATACG
AGACATATTTATTGAAAACCAAGAGAAATATTGGCTGTGCGATAAAAAAA
AATTTTTTTAGAAAAGAAAAATGAACATGCAAAAGCCTGTTGGTGAATTG
CTTAATCACGCCTCAATATTTTATAGAGTCACACCCATTTAAATGAGCTG
TTAATTGAGCCAATATGATTCGAAGCATTTTGATTTGCTGAACTTTACAG
TAGTAGCAATTCCAGTACTGGTTTTTGAGTGTTCACCCTTTGATAACAAT
AGTGGTTGCCTAGATAGTCGTTGCTAGTTTGTGATCATTAGAATTTTTAT
CATGAATTATATTCACTATAAAGAAATTCTTTCAGCTATTTTTTGCCAAC
TATATCTTAAAATCTTTTAAAAAAAATTAGAAGTGTGATCAAATTTCTCA
AATTTTTGTTTCATCGAATTTTCAATAAGATATTCCATTCAGCGACTATT
TCTAGGCTCTTTTTTGATCCACATGAAGATCCCATTTTGGCTCTTTATGA
AACTTCCAAAATTTTATATGATATACGAATTTTCTACATTAAGTTATTTG
ATAATATGAAATAATTAAAAGAAAAAGATATTTATTAACATATCATCCAA
AAAATTATGCAAAACTTAAAAAAAAATTTAGAGTCGAGTATTTTGATGAA
AATGTAGCTAGTTTTTACCCCCTGGTTTATAGCAGAAAATGCAGGACATG
TTGATATTAATATTTTAGAAATTATTTTTTCTCTAATACAGCACTCTTTT
TTTGCTACGATTTTAGACGATTTACCTATAGCCATCTCAGGTTTTTGGAC
CATTGCATTTCAAATTTTATAATCAAAATTTTGACAGTAATTTTCAGAAA
GTTCATATTCAAAAACCTGTCCGAACTCGTATCTGTGGCTTTGATTTTCT
CTTTGTGTATAATTTTTATGGCAGTTGATTTTATTATTATTTTGTGAACG
ATTTTACGTGGTCTGGTTTGTTTTTGTTCTTTTTTTTTGTTTCCTCGCAA
AATTTTGTCACTTTTCCATTTTATTATTCCATAAAATAGTGATTTTTTTT
TTGCAATTTGATATTAGACTAAAATAAAATAGGAAAAAACGTTCTGTAAT
TATATTTGAATTTTAGCATAAATGCAGTTGTTTTAAGGCTGTTCGTATTT
TTTCACCCATTTATCATTAAAAAAATTAGTATGTTAATTAAGTTATTAGT
AGTGAAAGCACTTTTTTGTTATTTTTGTGGTTATGTCATTTTTCAAAAGC
CCCAATAATATTTTGAGGTAGTTTTAATTTGTTTTGTTTCAATATTTTTT
TTGATCGTCTTATTTTCTTCATTTCATTTGTTCTTTGTTTTGGATGCTAT
ACTGAATTTGCGCTGAATTCTCACTACAACTATTGACCTATTTTTCAAGC
GAGAGCATTGAGTTTCGATTAATTTGCGTATAGTTTGTAATGCTTTGTTG
TCCTTAGTTCCCAACATTTATATATTTCTTGACTGTTTTCTTATACGAGA
TGTGATAAACTAGAGAATGAATGAAATAAAATGGAAAGATAGGACGTACT
ATAGGAAAAATATCATACAATTTGNACCTTATCGGGGAAAACTTCGTCGG
GGAAAAGTGACGAAATTTTGGACAAGTGACGAATATTTTCCCCGACGAAG
TTTTCCCCGATAAGGTAGTTTGTAATGCTTTGTTGTCCTTAGTTTATATT
CCCCAACATTTATATATTTCTTGACTGTTTTCTTATACGAGATGTGATAA
ACTAGAGAATGAATGAAATAAAATGGAAAGATAGGACGTACTATAGGAAA
AATATCATACAATTTGTTCACTTTTTTTTGCTTTCCATTCTACCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054023-exon-scaffold_238-1575043694:13925..13947 | TCONS_00054023-exon-scaffold_238-1575043694:13925..13947 | Clytia hemisphaerica | exon |
| TCONS_00054023-exon-scaffold_238-1575043694:9902..12165 | TCONS_00054023-exon-scaffold_238-1575043694:9902..12165 | Clytia hemisphaerica | exon |
| TCONS_00054023-exon-scaffold_238-1510915933:13925..13947 | TCONS_00054023-exon-scaffold_238-1510915933:13925..13947 | Clytia hemisphaerica | exon |
| TCONS_00054023-exon-scaffold_238-1510915933:9902..12165 | TCONS_00054023-exon-scaffold_238-1510915933:9902..12165 | Clytia hemisphaerica | exon |
| TCONS_00054023-exon-scaffold_238-1491911889:13925..13947 | TCONS_00054023-exon-scaffold_238-1491911889:13925..13947 | Clytia hemisphaerica | exon |
| TCONS_00054023-exon-scaffold_238-1491911889:9902..12165 | TCONS_00054023-exon-scaffold_238-1491911889:9902..12165 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_238 | supercontig | scaffold_238:9902..13947 - |
Blast
The following BLAST results are available for this feature:
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