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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054019 ID=TCONS_00054019|Name=TCONS_00054019|organism=Clytia hemisphaerica|type=transcript|length=1502bp
CAAAACTACAAGTATTGtgcaaatttggcttttttcacatccggtggatt
tccggcttccaaaataataaaaattagttttcagtGTTTCGTTTAGATAA
ATGTCACATTTCGAGTAATCAAACCATACAAAGTTTACATACCAAATCGT
TTTATTTTCCAATAGGAACAAATCACCAGACATTTCGAAGATTAAGGTCA
AGTCTGGATACGTACGTCGAAGAAGTCACAGTGGAATCATGGAAATCGCG
ATaagaattgttatttttgtattatcaatggtcGGTTGGTGGCTATGCGC
GACAGTTGAATTACTATAGGAatgctgaaaatcataaaattttatgtttc
cgATGAGCAAATACAGCATATTGTGAAAATCGGATGAAACGATAATATGA
TACAATGACTTTAAGCACATATTATGCAGAATCGATGTTGGCGATTGTAT
CAAATGTTGGTGATTGTAATGAATATTTTCGAAGCcattcgactctttgt
taataAAGACTGAAAATGACGACCATTTAGGATATTTTGAGATTCAATGA
ATTCAAGCTGCATTAGGATAATCGATTACATCAATTGTAATAATtccaaa
atagaaatatatatCCACTTATACCACTATTCAACGTTTCAATAATTATC
CTTATTATATCAACCAAAATGCATACATATATAGATGAATCAATTCACTA
GCAATGCACTTCCATATTTTTCCATATTGTCTATTTTTTAAACTCTGTGa
cagtctttttgatttttgagttggcaaataaataacaaaaagaatacaag
aaaataataaaaatggtagaaatattactttgttttgaatataataatgt
aaaaaaatctaataaatatgaaaaacagaaggaaaatgataaatataaaa
ataggaataaataatatagaaataggaataaattatacaataaataaaat
aatacattaAATGCCATATCCATAGGTATGTAAGTTTCCTGACGAGAtag
taatcaaaaatgaattaatgaaaGGCATTATTAAACTAATTGTCCTTTgt
ctatagatttttttttctaccatagactatccataaaagacactcacATA
TTTGACCCATTTCTCACACTCTCCCCAACTTTATCTGCAAATGTCAAATT
CAACAGAGCCCTCCTTTTGGNGTACATTAAATGCCATATCCATAGGTATG
TAAGTTTCCTGACGAGAtagtaatcaaaaatgaattaatgaaaGGCATTA
TCAAACTAATTGTCCTTTGtctatagattttttttctaccatagaccatc
cataaaagacactcacACATACTTGACCCATTTCTCACACTCTCCCCAAC
TTCATCTGCAAATGTCAAATTCAACAGAGCCCTCCTTTTGGTTAATGCAG
AAAAAAAAGCCTTCCTCCCCAAAGAATAAATGTCTTTTAAGAATAGTCTT
TAAACGTCAGAAAACTTACATAAGAATGGACGGGGTGGTGGGATGACCTT
AA Run BLAST on NCBI transcript from alignment at scaffold_237:556847..558348 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054019 ID=TCONS_00054019|Name=TCONS_00054019|organism=Clytia hemisphaerica|type=transcript|length=1502bp|location=Sequence derived from alignment at scaffold_237:556847..558348 (Clytia hemisphaerica)
TTAAGGTCATCCCACCACCCCGTCCATTCTTATGTAAGTTTTCTGACGTT
TAAAGACTATTCTTAAAAGACATTTATTCTTTGGGGAGGAAGGCTTTTTT
TTCTGCATTAACCAAAAGGAGGGCTCTGTTGAATTTGACATTTGCAGATG
AAGTTGGGGAGAGTGTGAGAAATGGGTCAAGTATGTgtgagtgtctttta
tggatggtctatggtagaaaaaaaatctatagaCAAAGGACAATTAGTTT
GATAATGCCtttcattaattcatttttgattactaTCTCGTCAGGAAACT
TACATACCTATGGATATGGCATTTAATGTACNCCAAAAGGAGGGCTCTGT
TGAATTTGACATTTGCAGATAAAGTTGGGGAGAGTGTGAGAAATGGGTCA
AATATgtgagtgtcttttatggatagtctatggtagaaaaaaaaatctat
agacAAAGGACAATTAGTTTAATAATGCCtttcattaattcatttttgat
tactaTCTCGTCAGGAAACTTACATACCTATGGATATGGCATTtaatgta
ttattttatttattgtataatttattcctatttctatattatttattcct
atttttatatttatcattttccttctgtttttcatatttattagattttt
ttacattattatattcaaaacaaagtaatatttctaccatttttattatt
ttcttgtattctttttgttatttatttgccaactcaaaaatcaaaaagac
tgtCACAGAGTTTAAAAAATAGACAATATGGAAAAATATGGAAGTGCATT
GCTAGTGAATTGATTCATCTATATATGTATGCATTTTGGTTGATATAATA
AGGATAATTATTGAAACGTTGAATAGTGGTATAAGTGGatatatatttct
attttggaATTATTACAATTGATGTAATCGATTATCCTAATGCAGCTTGA
ATTCATTGAATCTCAAAATATCCTAAATGGTCGTCATTTTCAGTCTTtat
taacaaagagtcgaatgGCTTCGAAAATATTCATTACAATCACCAACATT
TGATACAATCGCCAACATCGATTCTGCATAATATGTGCTTAAAGTCATTG
TATCATATTATCGTTTCATCCGATTTTCACAATATGCTGTATTTGCTCAT
cggaaacataaaattttatgattttcagcatTCCTATAGTAATTCAACTG
TCGCGCATAGCCACCAACCgaccattgataatacaaaaataacaattctt
ATCGCGATTTCCATGATTCCACTGTGACTTCTTCGACGTACGTATCCAGA
CTTGACCTTAATCTTCGAAATGTCTGGTGATTTGTTCCTATTGGAAAATA
AAACGATTTGGTATGTAAACTTTGTATGGTTTGATTACTCGAAATGTGAC
ATTTATCTAAACGAAACactgaaaactaatttttattattttggaagccg
gaaatccaccggatgtgaaaaaagccaaatttgcaCAATACTTGTAGTTT
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054019-exon-scaffold_237-1491911889:556847..558348 | TCONS_00054019-exon-scaffold_237-1491911889:556847..558348 | Clytia hemisphaerica | exon |
| TCONS_00054019-exon-scaffold_237-1510915933:556847..558348 | TCONS_00054019-exon-scaffold_237-1510915933:556847..558348 | Clytia hemisphaerica | exon |
| TCONS_00054019-exon-scaffold_237-1575043694:556847..558348 | TCONS_00054019-exon-scaffold_237-1575043694:556847..558348 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:556847..558348 . |
Blast
The following BLAST results are available for this feature:
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