TCONS_00054004 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054004
Unique NameTCONS_00054004
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length552

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054004 ID=TCONS_00054004|Name=TCONS_00054004|organism=Clytia hemisphaerica|type=transcript|length=552bp
AAACGAGGAGTCGTCAATCAATAAAAAGTTTTGCTGAGGTCACGAAAACA
CACAGAATTAAGAATCACAAATATCAAGCAATTGATTCGGAGCAAAAAAA
TAGAAGAGCAAGTCGAAGAACAGGAAACAATATAGCGATACAAATGTGAT
TATCCAcggtaaaaaagaaattgaaactgAAAACATACATACATGATTTT
GGTAATGAACTGCTGGAAAATGTCAATATCAAAACTCAACCAGCTTATGT
CGCCCGAATTGGAAAAGAGTGTAAAAGATCACGTCCAATTAAAGTCTTTT
AATAATGATGGACACATGAAATACAGATTCATGAGGAGACTGAGGAATCG
AAAAAACTTCAGAAATACGACATGATCAGTTGAACAGATGATTTGACTAA
AATGGAGAGGGATAGAGTAAAAGAGATAGCCGATATAAGAAATAAAGCAC
TGTCGACGAACATTGATTATAAATGGAGAGTGTGAGGCAGTCCTCGTAAT
AAATTGTACATTAAAAAGATCTATTGTATTGTTAGACAGGTTTAGAGAGG
AG
Run BLAST on NCBI

transcript from alignment at scaffold_237:307422..307973

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054004 ID=TCONS_00054004|Name=TCONS_00054004|organism=Clytia hemisphaerica|type=transcript|length=552bp|location=Sequence derived from alignment at scaffold_237:307422..307973 (Clytia hemisphaerica)
CTCCTCTCTAAACCTGTCTAACAATACAATAGATCTTTTTAATGTACAAT
TTATTACGAGGACTGCCTCACACTCTCCATTTATAATCAATGTTCGTCGA
CAGTGCTTTATTTCTTATATCGGCTATCTCTTTTACTCTATCCCTCTCCA
TTTTAGTCAAATCATCTGTTCAACTGATCATGTCGTATTTCTGAAGTTTT
TTCGATTCCTCAGTCTCCTCATGAATCTGTATTTCATGTGTCCATCATTA
TTAAAAGACTTTAATTGGACGTGATCTTTTACACTCTTTTCCAATTCGGG
CGACATAAGCTGGTTGAGTTTTGATATTGACATTTTCCAGCAGTTCATTA
CCAAAATCATGTATGTATGTTTTcagtttcaatttcttttttaccgTGGA
TAATCACATTTGTATCGCTATATTGTTTCCTGTTCTTCGACTTGCTCTTC
TATTTTTTTGCTCCGAATCAATTGCTTGATATTTGTGATTCTTAATTCTG
TGTGTTTTCGTGACCTCAGCAAAACTTTTTATTGATTGACGACTCCTCGT
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034089XLOC_034089Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054004-exon-scaffold_237-1491911889:307422..307973TCONS_00054004-exon-scaffold_237-1491911889:307422..307973Clytia hemisphaericaexon
TCONS_00054004-exon-scaffold_237-1510915933:307422..307973TCONS_00054004-exon-scaffold_237-1510915933:307422..307973Clytia hemisphaericaexon
TCONS_00054004-exon-scaffold_237-1575043694:307422..307973TCONS_00054004-exon-scaffold_237-1575043694:307422..307973Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:307422..307973 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0.0714396	0.234932	0.126059	0.232942	0.159172	0	0	0	0.146338	0.118595	0	0.111052	0.0991114	0	0.302725	0.229607	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054004 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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