TCONS_00053993 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053993
Unique NameTCONS_00053993
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length632

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053993 ID=TCONS_00053993|Name=TCONS_00053993|organism=Clytia hemisphaerica|type=transcript|length=632bp
NNGTTGTGGTAGACACGACTTGAGTTTCAGGAATTTGATCACAAGAGCAA
GAGTTGAAGTGGCTTTCTTCCAACCATATTTGTTAGGATCAATGATGTAC
TTTGAAAAACTGTATCGATCAGATATTGATTGTGCTGATGATGACAAATG
GCAAGTTTGAGCTTCTGACAAGTATGACATTGACAACGTGCTCTGTGGAA
TGATTGTTGATATAATTTGCTCTTTCTCAATATCCTTGACTTCATCCTGA
TTGAGCTTGATTTGATTAACAGTCTTGGTTGGGAAGGTTTCCACTGATTC
TTTCATCCATGGAAAACCATTGAACCATTTTGAAtcttgacaaatttcat
tcaaggaTACACCTTTTCTTGTCCCGATATCAGCAATCATGTCTTGACTT
TTGACAAACCTCCAGTCATCAGGATTTGTGAAGCGATGAACTTCGTTGAC
ACGGTTGCGGACATAGGGTTTCAATTGTTTGTCACTATGAAGCCAGAAAA
GCACAATTTGGCTGTCTGTCAGCTTTAGTGAAGATTGATGATGCCTTTGA
AATGCTCTTCTCACAACTTCACCAGTATGGGCGTTCAGAGTTGCAGCATA
TAGTTCAGCTCGAGGTTGTGTGGTGCCATCTG
Run BLAST on NCBI

protein sequence of TCONS_00053993-protein

>TCONS_00053993-protein ID=TCONS_00053993-protein|Name=TCONS_00053993-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
DGTTQPRAELYAATLNAHTGEVVRRAFQRHHQSSLKLTDSQIVLFWLHSD
KQLKPYVRNRVNEVHRFTNPDDWRFVKSQDMIADIGTRKGVSLNEICQDS
KWFNGFPWMKESVETFPTKTVNQIKLNQDEVKDIEKEQIISTIIPQSTLS
MSYLSEAQTCHLSSSAQSISDRYSFSKYIIDPNKYGWKKATSTLALVIKF
LKLKSCLPQX
Run BLAST on NCBI

transcript from alignment at scaffold_237:63134..63765

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053993 ID=TCONS_00053993|Name=TCONS_00053993|organism=Clytia hemisphaerica|type=transcript|length=632bp|location=Sequence derived from alignment at scaffold_237:63134..63765 (Clytia hemisphaerica)
CAGATGGCACCACACAACCTCGAGCTGAACTATATGCTGCAACTCTGAAC
GCCCATACTGGTGAAGTTGTGAGAAGAGCATTTCAAAGGCATCATCAATC
TTCACTAAAGCTGACAGACAGCCAAATTGTGCTTTTCTGGCTTCATAGTG
ACAAACAATTGAAACCCTATGTCCGCAACCGTGTCAACGAAGTTCATCGC
TTCACAAATCCTGATGACTGGAGGTTTGTCAAAAGTCAAGACATGATTGC
TGATATCGGGACAAGAAAAGGTGTAtccttgaatgaaatttgtcaagaTT
CAAAATGGTTCAATGGTTTTCCATGGATGAAAGAATCAGTGGAAACCTTC
CCAACCAAGACTGTTAATCAAATCAAGCTCAATCAGGATGAAGTCAAGGA
TATTGAGAAAGAGCAAATTATATCAACAATCATTCCACAGAGCACGTTGT
CAATGTCATACTTGTCAGAAGCTCAAACTTGCCATTTGTCATCATCAGCA
CAATCAATATCTGATCGATACAGTTTTTCAAAGTACATCATTGATCCTAA
CAAATATGGTTGGAAGAAAGCCACTTCAACTCTTGCTCTTGTGATCAAAT
TCCTGAAACTCAAGTCGTGTCTACCACAACNN

Coding sequence (CDS) from alignment at scaffold_237:63134..63765

>TCONS_00053993 ID=TCONS_00053993|Name=TCONS_00053993|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_237:63134..63765 (Clytia hemisphaerica)
GATGGCACCACACAACCTCGAGCTGAACTATATGCTGCAACTCTGAACGC
CCATACTGGTGAAGTTGTGAGAAGAGCATTTCAAAGGCATCATCAATCTT
CACTAAAGCTGACAGACAGCCAAATTGTGCTTTTCTGGCTTCATAGTGAC
AAACAATTGAAACCCTATGTCCGCAACCGTGTCAACGAAGTTCATCGCTT
CACAAATCCTGATGACTGGAGGTTTGTCAAAAGTCAAGACATGATTGCTG
ATATCGGGACAAGAAAAGGTGTAtccttgaatgaaatttgtcaagaTTCA
AAATGGTTCAATGGTTTTCCATGGATGAAAGAATCAGTGGAAACCTTCCC
AACCAAGACTGTTAATCAAATCAAGCTCAATCAGGATGAAGTCAAGGATA
TTGAGAAAGAGCAAATTATATCAACAATCATTCCACAGAGCACGTTGTCA
ATGTCATACTTGTCAGAAGCTCAAACTTGCCATTTGTCATCATCAGCACA
ATCAATATCTGATCGATACAGTTTTTCAAAGTACATCATTGATCCTAACA
AATATGGTTGGAAGAAAGCCACTTCAACTCTTGCTCTTGTGATCAAATTC
CTGAAACTCAAGTCGTGTCTACCACAACNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034078XLOC_034078Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053993-exon-scaffold_237-1491911889:63134..63765TCONS_00053993-exon-scaffold_237-1491911889:63134..63765Clytia hemisphaericaexon
TCONS_00053993-exon-scaffold_237-1510915933:63134..63765TCONS_00053993-exon-scaffold_237-1510915933:63134..63765Clytia hemisphaericaexon
TCONS_00053993-exon-scaffold_237-1575043694:63134..63765TCONS_00053993-exon-scaffold_237-1575043694:63134..63765Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053993-proteinTCONS_00053993-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:63134..63765 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.08128	3.06144	2.04965	1.96687	1.65621	0.410256	0.316633	1.21681	0.212911	0.113785	0	0.681324	0.597466	0.142924	0.698347	0.495416	0.635825	0.722741	0.946147	1.17518	0.983683	1.08707	1.50737	2.83587	1.35741	0.692883	1.27178	0.530066	1.44702	1.11749
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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