TCONS_00053982 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053982
Unique NameTCONS_00053982
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053982 ID=TCONS_00053982|Name=TCONS_00053982|organism=Clytia hemisphaerica|type=transcript|length=2510bp
AACATAGTCAGTCAGTAGCGGCACTGTTAGAGTGGAGTGGAGGCAGCACA
AGATGATTGCAGCACAACAAACAAAATTGAGACCCAGATGAGCGTGAGCC
CAAGAAGACAAACGACAGAAAGAAATGGCAATCCCCGAACACCAAAACCC
AGACTTTGAGAAGCTTTTTGGGTTGGCGAATAATTTGGACATATTGTTAT
CTTCGCTGGTATTAAGATTGGAGAAGAATGTTGTGATGGATGGACAagct
agaaaaatttcaattttacttcAGTATTGTGGATATGgttaagcattatt
ttttcctccCTTTTGACAACTTTACCAATTTTTATCTAACTCTGTTTATT
CCAATCGACAATAGGTGTGATGATTCAGACTTGGTCAAGTTTGTCATGGA
ACTACTACTACAACAAACACCAGATTTACTTGGCAAGTTTAATTTTGATC
ATTTCTTTATTAATCGTACCCTCTGTGTCTAACTTAAATAATTTGCAACC
ATTTTTGACCCTGGAGTGTTTTATAGCTTTTACTCAGTGCATGCCCTTGG
AGTATGTTTAATGTTGATCATTTCCTTTTGTGCTACCATTTGGTCTTGGT
TTTCATTGTCAATAATAGTTACAAGGAAAGAGGATGGAGAAAGTTCAACT
ATTTATGTGGTTGTTTAGAAAGTTATTGATGGTGAATTCTTTGACCATTC
CAACTAATCAATGCTTTTGAAGGTTCAGACTGTTTATGAGGTTTAAGGTT
TGAGACTAATTATGTGTTTTGATAATCTTCAAACTTATTGATTAGTCCCA
CCCACCTTCGTTAAGGGTACATCTAAACTTACTCTGAGGGCATATTTCTT
CTCACCATCAAACCCTCACATATTTCCACCTTGCAATTGCTGTGCTGGTt
tgctttttcttctttattttttagtgTCGCGATGTGGATCAAATGATGTG
GAGCTTTATTGCATGCACAAGAATCAATCGGCAAGTTACTTTTGCTTTGT
TTCACTGAATTTACCCTTTGCCCTTTTTTTACAGTGGCCCTGAAAATTTT
TAGTCTTGTGATAATTTCTGTCCCTGGAGTATATTTGATGTTGATCATTT
CCTTTTGTGGTACCATTTGGTCTTGGTTTTCATTGTCAATAATAGTTACA
AGGAAAGAGGATGGAGAAAGTTCGACTATTTATGTGGTTGTTTAGAAAGT
TATTGATGGTGAATTCTTTGACCATTCCTACTAATCAATGCTTTTGAAGG
TTTAGACTGTTTATGAGGTTTAAGGTTTGAGACTAATTATGTGTTTTGAT
AATCTTCAAACTTATTGATTAGTCCCACCCACCTTCGTTAAGGGTACATC
TAAACTTACTCTGAGGGCATATTTCTTCTCACCATCAAACCCTCACATAT
TTCCACCTTGCAATTGCTTTGCTggtttgcttttttttctttatttttta
gtgTCCCGATGTGGATCAAATGATGTGGAGCTTTATTGTATGCACAAGAA
TCAATCGGCAAGTTACTTTGGATTTGTTTCACTGAATTTACCCTTTGCCC
TTTTTTTACAGTTTCCCTGAAAATTTTTAGTCTTGTGATAATTTCTGTCC
CTGGAGTATATTTGATGTTGATCATTTCCTTTTGTGGTACCATTTGGTCT
TGGTTTTCATTGTCAATAATAGTTACAAGGAAAGAGGATGGAGAATGTTT
GACTATTTATGTGGTTGTTTAGAAAGTTATTGATGGTGAATTCTTTGACC
ATTCCAACTAATCGATGCCTTTGAAGGTTTAGAATGTTTATGAGGTTTGA
GATATGAGACTAATTATGTGTTTTGATAATCTTCAAACTTATCGATTAGT
CCCACCCTTTATCTCACTTCATATTATACGTTTAATGTCATCTTACTTTA
TGGACAGAAATCCCCTCTTAACCTCTGATCTCCTTCATACTTAGAAAGGC
TTTCTATTTTGTATTTGTAGCATTTTGTTGttggttttctttttatttat
gttttagtGTTTGAATGGGGAAACCTTCCACCAAACGAAACAAGCAATCG
ATAAGACATCATTTAGTTTATTAAGCTTCATCTGTGGAACCTGCTCGGAT
AACATCTCGTGTCAACACAACAACTCGAACCAATAAATATCAAATGGTTG
TTATGTTAAACTGTTTAATGTTGTTTGCTGCCCTAATAAACAGACTTCAT
GTTGCTACAACAAAATCTGTTAAGTAAAATTGCTCTTTGTCAGCTTTTAG
TTCTGCCACACTTGAACTCGCTATGGTTCTTACGGTGAATATAGTGATTG
CTActgggtgtcccagaaaaaagtccctCTCTTTGAAGTGAACTTTCTTG
ATTTCTGTGATTGTGAAAGaatcagtttttttttgcattggaaagaagGT
GGATAGAAttgaattttgaggggtcattattttgtcaaatttggtcaact
agatcaaaagttatggtctaaacttcaaaacattacttttcaaaaaaatc
gaaaaaaggc
Run BLAST on NCBI

transcript from alignment at scaffold_237:457079..461643-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053982 ID=TCONS_00053982|Name=TCONS_00053982|organism=Clytia hemisphaerica|type=transcript|length=4565bp|location=Sequence derived from alignment at scaffold_237:457079..461643- (Clytia hemisphaerica)
AACATAGTCAGTCAGTAGCGGCACTGTTAGAGTGGAGTGGAGGCAGCACA
AGATGATTGCAGCACAACAAACAAAATTGAGACCCAGATGAGCGTGAGCC
CAAGAAGACAAACGACAGAAAGAAATGGCAATCCCCGAACACCAAAACCC
AGACTTTGAGAAGCTTTTTGGGTATGTCACTTTGACTTCTTCATGGCAAT
AAAAGCTTTAGATATTATGACGTATATTATGTTTATTTTTTTACTCCTAA
GAAATTTAGATTATACCTAGTGCTCGATTACTAAAGTTTGCCTACACTGA
ATTTCATGAGTTATTAGTCAGCTAGTTTGAAACGCAGGTTCAGGTTTTAG
GTTACAGGTTCAGGTTTCAGGTTACAGGTTAAATCTTTTTGATGGAAATT
TCAGAAATAAAATATCCCAACAACGTGTAAGGTGGAGCTTTGCGGTTTCG
ACATTATATAAACTATTCTATAATTGTTTGAAATTATTGAATTATCATGC
AAAGTAAAATACCTATTTTTATTTTGAAACGCGTTCAATTTACTGACTTT
AATAATTATTTTACAGACGGTGCGTTTCGTTTATTCGTTTTTATTCAAAA
CCAATAGCCAGAAAAGATTACATAATCTAATATGAAAATGAAATAGCCAC
ATGAGCCATCAACTTGATCATTGGAATTTTCTGTATACGCATGCAAAAGT
GTGAAACCTATTTATTTTTTTTAATTGGAGGCCAGGAGAAAATGAAATAT
GCAATTGACCTTTTACATAGTTATAATGTATGTTGATTCAGCAGATTAAA
ATAAATAGAATCTTTTGTAATGAATAAAGAAAAATGTGGAGCAAGATTTT
TTTCTTCCTTTTATTTACAAATTTGAAAGTACTCTTTTATTAAAATTTTG
CTGACATCAGTTTCAGACGAGTCGGGTGTATGTAACACCGTATAATTCCT
TTAAGGCAAATATTTATTTATAATAATCTTTCTCTATTATCACCCACAAG
AGCAGTATACCAGAAATATATACAGAAGAAAAAATATATACATGTTAGAA
AAAATAACTTTAACATGTAATACAGAAAAGAGAAAAAACTTCAAGTCAAA
ATGTTATATCTGGTCTTGCAATTATTCTGTTTTAACCTTTAATCTGAAAC
ATGAAACCTGAACCTGCGTTTCGAACTACCTGGTTATTAGTCAAAATTTC
GCGAAATTTAGTAGTATAAATCTTTTAAAAACACAAAATCATACAATTAA
ATAACCATGAACATTTTCAAAACAGGCAAAAATTGTGGAATTTTTAAAAA
TAAAAGCAGAACGTGAATTTTTAAGGGATCCACAGTGATGTTTTGTATGG
TTAATACCAGACTGTACATATAAATTTGATTATCAAACTAATCAATAATG
ATCCAAGTAATCAAGCAACCACTTATCAATGAATAATCAAATCTCTAGTA
TTAAAATTTCAAAAAAATTGTGAGTATTCAACTACTTATGTACTTTCTTA
ACAGCTCTAACATTGTTTGAGTACTTTGATTGTTATTGATCACTGTACAT
AGTTCGAACCCCCCCCCTTATTTAAGGGGGGGATGACACCTTCCAAAAAA
GTGACGAAGGGGGGGGGATCAGAAATTTTCACTAAAAAGGGGGTATAGCA
AGGAGAGGGGATCGCGGGGGATCGTTTAAGAAGGGGGGCTTACATATATT
GAAGATTATTTTCCAGCACTGTTATGAAATTTGGTCGGCATGAAAGGAAG
TTCTTTATTTTCACTAAAAATTGGTATATATTTGCCAGACTTAATTTTTC
TTTACAGTTTCCCTTCCCTTTTTACCATAAAAAAATTAGCCCGCAATCCT
TGGGGGATNTTGGTCTGCATGAAAGGAAGTTCTTTATTCTCACTAAAAAG
TGGTATATATTTGCCAGACTTAATTTTTCTCTTCCCTTTTTACCATAAAA
AAATTAGCCCGAAATACTTGGGGGATAGGTATTTTTAAAGGTTGGGGGGA
TGCCAAGAAGGGGGAGATCATTTAAGAAGGGGGAGATCATTTAAGAAGGG
GGAGATCATTTAAGAAGGGGGGGATCAGACCCCTTTCCGCACTATGCTGT
ACTTTCGATTTCATTTTGCGTGAAAAGTTTTCTTAGTTCCTGCTTTGGGT
AGATTTCTCCTTGTTTTGGGAGTTTTTGGCTCATTGCAATCTTTCAAAGA
TTTTGATATGAATTTTCTTCTTACAGGTTGGCGAATAATTTGGACATATT
GTTATCTTCGCTGGTATTAAGATTGGAGAAGAATGTTGTGATGGATGGAC
AAGCTAGAAAAATTTCAATTTTACTTCAGTATTGTGGATATGGTTAAGCA
TTATTTTTTCCTCCCTTTTGACAACTTTACCAATTTTTATCTAACTCTGT
TTATTCCAATCGACAATAGGTGTGATGATTCAGACTTGGTCAAGTTTGTC
ATGGAACTACTACTACAACAAACACCAGATTTACTTGGCAAGTTTAATTT
TGATCATTTCTTTATTAATCGTACCCTCTGTGTCTAACTTAAATAATTTG
CAACCATTTTTGACCCTGGAGTGTTTTATAGCTTTTACTCAGTGCATGCC
CTTGGAGTATGTTTAATGTTGATCATTTCCTTTTGTGCTACCATTTGGTC
TTGGTTTTCATTGTCAATAATAGTTACAAGGAAAGAGGATGGAGAAAGTT
CAACTATTTATGTGGTTGTTTAGAAAGTTATTGATGGTGAATTCTTTGAC
CATTCCAACTAATCAATGCTTTTGAAGGTTCAGACTGTTTATGAGGTTTA
AGGTTTGAGACTAATTATGTGTTTTGATAATCTTCAAACTTATTGATTAG
TCCCACCCACCTTCGTTAAGGGTACATCTAAACTTACTCTGAGGGCATAT
TTCTTCTCACCATCAAACCCTCACATATTTCCACCTTGCAATTGCTGTGC
TGGTTTGCTTTTTCTTCTTTATTTTTTAGTGTCGCGATGTGGATCAAATG
ATGTGGAGCTTTATTGCATGCACAAGAATCAATCGGCAAGTTACTTTTGC
TTTGTTTCACTGAATTTACCCTTTGCCCTTTTTTTACAGTGGCCCTGAAA
ATTTTTAGTCTTGTGATAATTTCTGTCCCTGGAGTATATTTGATGTTGAT
CATTTCCTTTTGTGGTACCATTTGGTCTTGGTTTTCATTGTCAATAATAG
TTACAAGGAAAGAGGATGGAGAAAGTTCGACTATTTATGTGGTTGTTTAG
AAAGTTATTGATGGTGAATTCTTTGACCATTCCTACTAATCAATGCTTTT
GAAGGTTTAGACTGTTTATGAGGTTTAAGGTTTGAGACTAATTATGTGTT
TTGATAATCTTCAAACTTATTGATTAGTCCCACCCACCTTCGTTAAGGGT
ACATCTAAACTTACTCTGAGGGCATATTTCTTCTCACCATCAAACCCTCA
CATATTTCCACCTTGCAATTGCTTTGCTGGTTTGCTTTTTTTTCTTTATT
TTTTAGTGTCCCGATGTGGATCAAATGATGTGGAGCTTTATTGTATGCAC
AAGAATCAATCGGCAAGTTACTTTGGATTTGTTTCACTGAATTTACCCTT
TGCCCTTTTTTTACAGTTTCCCTGAAAATTTTTAGTCTTGTGATAATTTC
TGTCCCTGGAGTATATTTGATGTTGATCATTTCCTTTTGTGGTACCATTT
GGTCTTGGTTTTCATTGTCAATAATAGTTACAAGGAAAGAGGATGGAGAA
TGTTTGACTATTTATGTGGTTGTTTAGAAAGTTATTGATGGTGAATTCTT
TGACCATTCCAACTAATCGATGCCTTTGAAGGTTTAGAATGTTTATGAGG
TTTGAGATATGAGACTAATTATGTGTTTTGATAATCTTCAAACTTATCGA
TTAGTCCCACCCTTTATCTCACTTCATATTATACGTTTAATGTCATCTTA
CTTTATGGACAGAAATCCCCTCTTAACCTCTGATCTCCTTCATACTTAGA
AAGGCTTTCTATTTTGTATTTGTAGCATTTTGTTGTTGGTTTTCTTTTTA
TTTATGTTTTAGTGTTTGAATGGGGAAACCTTCCACCAAACGAAACAAGC
AATCGATAAGACATCATTTAGTTTATTAAGCTTCATCTGTGGAACCTGCT
CGGATAACATCTCGTGTCAACACAACAACTCGAACCAATAAATATCAAAT
GGTTGTTATGTTAAACTGTTTAATGTTGTTTGCTGCCCTAATAAACAGAC
TTCATGTTGCTACAACAAAATCTGTTAAGTAAAATTGCTCTTTGTCAGCT
TTTAGTTCTGCCACACTTGAACTCGCTATGGTTCTTACGGTGAATATAGT
GATTGCTACTGGGTGTCCCAGAAAAAAGTCCCTCTCTTTGAAGTGAACTT
TCTTGATTTCTGTGATTGTGAAAGAATCAGTTTTTTTTTGCATTGGAAAG
AAGGTGGATAGAATTGAATTTTGAGGGGTCATTATTTTGTCAAATTTGGT
CAACTAGATCAAAAGTTATGGTCTAAACTTCAAAACATTACTTTTCAAAA
AAATCGAAAAAAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034069XLOC_034069Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053982-exon-scaffold_237-1575043694:461473..461643TCONS_00053982-exon-scaffold_237-1575043694:461473..461643Clytia hemisphaericaexon
TCONS_00053982-exon-scaffold_237-1575043694:457079..459417TCONS_00053982-exon-scaffold_237-1575043694:457079..459417Clytia hemisphaericaexon
TCONS_00053982-exon-scaffold_237-1510915933:461473..461643TCONS_00053982-exon-scaffold_237-1510915933:461473..461643Clytia hemisphaericaexon
TCONS_00053982-exon-scaffold_237-1510915933:457079..459417TCONS_00053982-exon-scaffold_237-1510915933:457079..459417Clytia hemisphaericaexon
TCONS_00053982-exon-scaffold_237-1491911889:461473..461643TCONS_00053982-exon-scaffold_237-1491911889:461473..461643Clytia hemisphaericaexon
TCONS_00053982-exon-scaffold_237-1491911889:457079..459417TCONS_00053982-exon-scaffold_237-1491911889:457079..459417Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:457079..461643 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.66958	3.90476	3.11988	4.72813	0.353474	0.410764	0.336987	0.25981	0.116935	0.144843	0.109346	0.0616114	0	0.0745443	0	0.00939554	0	0.0118635	0	0	0.0298148	0.0218139	0.749554	0.771469	0.0496622	0.195375	0	0.045126	0.171132	0.123603
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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