TCONS_00053981 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053981
Unique NameTCONS_00053981
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1261

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053981 ID=TCONS_00053981|Name=TCONS_00053981|organism=Clytia hemisphaerica|type=transcript|length=1261bp
CTTGAAACTCTAAATTTGTCAAAATACAAATAACATGTCGGCCTTTTCGT
GAAAGACCTTGCGTAAAGTTAGTTACCCAGATTTTGACACGTTTGTCACT
CTTCTATTGTTGTTAGTTAGATGCTAAACGTTTTATTTATACCATTTCAC
CAAGTATGTAACTCATAATTGATCAACTTTTATTCATCATTGAATATAAT
TAACTCACGGATTGACGTACTCGCTCACACTGACAGACCGACTGACATAG
ACTTAGTAGGGCCAAATACAATCAGCAAGCTTCTtattgagaacaataga
aatgttAGACATCAATTTCATTGTGCTAAATTTTGAGCATAAAAACATCA
AACCTTATGCTTGCTATCTGCCAAGCTCCACAGATCTGGTGCTGTTTTGC
TTTTTGTCTTCTAGAGCAAAGTCAACGTTGATCAACATCTTCATTAGTTA
CAATCCAGTATATATCAACACTAACAGCTCTATTTTGTCAAGACACAGCA
GAAATGAGTTCATTGATACTCAAGAAGTCCATTCGTCGATCAATTGCACA
ATGTGTTAACAGCCAGAGTATCAAATTTTCCTGTCAATATCAGCCGAGAA
GCCAACTATAACTCGTGTCAGACTCGCACATAATTCCTCTTACAATGCGA
CATTTACAGAGCTCAATCTATACCGCTGACAACAGAGAACACCTCAAAAC
CTGATCAAGTTAATCCAACTCCATCCGGCAAGTTGATTCTATTTTAACCA
TTATCTTTCACTtgttcatctttattttcacaTAAAAGTGTAAATTTTTT
GGTCAAATAAGTCAATTCCTCAAGGTTATGCGAAGGAAGTAACTTTCATA
GAAACTtccttttcatgttttttttcgcCTTCTACTTCGCAAGTGTTTCA
TTACTTGTACAATCAGCTGATTGTCAATAAAGTTTTTCATCAATTGAAAA
CTTTAAAGACGATTAAATCTCATTGTACATTATTATGTTTGAGTCGATTT
GGATGTTGCAATTTGCAGGTTTCCACTAGTGTGGGGTGGGTTTGTTGTTG
TATAAGAAGGGTGTTTGTGGTGGTTGTTGTTAAGTTGGTTTGTTGTTTAT
TAGTAATCAAACACACGCAAAGTAGAAGCTACCATAGGCATTTCAAATGA
CTTTTTTGGCCAATCCTTTACATACCTTTTTGAAAAGCAATATGACCAAA
GAGACTGATTATCATCTTCGTCATCTCCTAATAACTGCTATCTTATAACC
TGGCACGTAAC
Run BLAST on NCBI

transcript from alignment at scaffold_237:455188..456536-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053981 ID=TCONS_00053981|Name=TCONS_00053981|organism=Clytia hemisphaerica|type=transcript|length=1349bp|location=Sequence derived from alignment at scaffold_237:455188..456536- (Clytia hemisphaerica)
CTTGAAACTCTAAATTTGTCAAAATACAAATAACATGTCGGCCTTTTCGT
GAAAGACCTTGCGTAAAGTTAGTTACCCAGATTTTGACACGTTTGTCACT
CTTCTATTGTTGTTAGTTAGATGCTAAACGTTTTATTTATACCATTTCAC
CAAGTATGTAACTCATAATTGATCAACTTTTATTCATCATTGAATATAAT
TAACTCACGGATTGACGTACTCGCTCACACTGACAGACCGACTGACATAG
ACTTAGTAGGGCCAAATACAATCAGCAAGCTTCTTATTGAGAACAATAGA
AATGTTAGACATCAATTTCATTGTGCTAAATTTTGAGCATAAAAACATCA
AACCTTATGCTTGCTATCTGCCAAGCTCCACAGATCTGGTGCTGTTTTGC
TTTTTGTCTTCTAGAGCAAAGTCAACGTTGATCAACATCTTCATTAGTTA
CAATCCAGTATATATCAACACTAACAGCTCTATTTTGTCAAGACACAGCA
GAAATGAGTTCATTGATACTCAAGAAGTCCATTCGTCGATCAATTGCACA
ATGTGTTAACAGCCAGAGTATCAAGTAAGTAGGTCTTTCCATTTTTGTAA
CTCGTTTTATGATGTAATCACCTTGTACTTTGTAATCCTATTAGTTTAGC
TTCCGATTTCAGATTTTCCTGTCAATATCAGCCGAGAAGCCAACTATAAC
TCGTGTCAGACTCGCACATAATTCCTCTTACAATGCGACATTTACAGAGC
TCAATCTATACCGCTGACAACAGAGAACACCTCAAAACCTGATCAAGTTA
ATCCAACTCCATCCGGCAAGTTGATTCTATTTTAACCATTATCTTTCACT
TGTTCATCTTTATTTTCACATAAAAGTGTAAATTTTTTGGTCAAATAAGT
CAATTCCTCAAGGTTATGCGAAGGAAGTAACTTTCATAGAAACTTCCTTT
TCATGTTTTTTTTCGCCTTCTACTTCGCAAGTGTTTCATTACTTGTACAA
TCAGCTGATTGTCAATAAAGTTTTTCATCAATTGAAAACTTTAAAGACGA
TTAAATCTCATTGTACATTATTATGTTTGAGTCGATTTGGATGTTGCAAT
TTGCAGGTTTCCACTAGTGTGGGGTGGGTTTGTTGTTGTATAAGAAGGGT
GTTTGTGGTGGTTGTTGTTAAGTTGGTTTGTTGTTTATTAGTAATCAAAC
ACACGCAAAGTAGAAGCTACCATAGGCATTTCAAATGACTTTTTTGGCCA
ATCCTTTACATACCTTTTTGAAAAGCAATATGACCAAAGAGACTGATTAT
CATCTTCGTCATCTCCTAATAACTGCTATCTTATAACCTGGCACGTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034068XLOC_034068Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053981-exon-scaffold_237-1575043694:455963..456536TCONS_00053981-exon-scaffold_237-1575043694:455963..456536Clytia hemisphaericaexon
TCONS_00053981-exon-scaffold_237-1575043694:455188..455874TCONS_00053981-exon-scaffold_237-1575043694:455188..455874Clytia hemisphaericaexon
TCONS_00053981-exon-scaffold_237-1510915933:455963..456536TCONS_00053981-exon-scaffold_237-1510915933:455963..456536Clytia hemisphaericaexon
TCONS_00053981-exon-scaffold_237-1510915933:455188..455874TCONS_00053981-exon-scaffold_237-1510915933:455188..455874Clytia hemisphaericaexon
TCONS_00053981-exon-scaffold_237-1491911889:455963..456536TCONS_00053981-exon-scaffold_237-1491911889:455963..456536Clytia hemisphaericaexon
TCONS_00053981-exon-scaffold_237-1491911889:455188..455874TCONS_00053981-exon-scaffold_237-1491911889:455188..455874Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:455188..456536 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.850772	0.690612	0.895649	1.23279	0.181915	0.035938	0.0867153	0.121773	0.0852559	0.140804	0	0.0449201	0	0.0465851	0.0191497	0.0616515	0	0.0259486	0.0358495	0.0375139	0.0326064	0	0.270672	0.210926	0.108624	0.0969445	0	0	0.262018	0.0806498
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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