TCONS_00053975 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053975
Unique NameTCONS_00053975
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length241

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053975 ID=TCONS_00053975|Name=TCONS_00053975|organism=Clytia hemisphaerica|type=transcript|length=241bp
GCAGAACTTTTATAGGATTCTGTAAGGTTGGAATtccgaaatttttcaaa
atattcaggAGGATCAATCAATTTAATTCAGACATTAGTGTTACTGGAAG
ACAGAAATGACTGAACAACTTTGGtgtttgtttttaatgattttcatgTG
TATTTTACATGAAACCAAAACACAAGGTTGTGCTGGAGTGCGGTGGCAAC
ATAGATGTAAAAATAGGAGAATTGGCGGAGGGGGTGGGCGT
Run BLAST on NCBI

transcript from alignment at scaffold_237:340984..341813-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053975 ID=TCONS_00053975|Name=TCONS_00053975|organism=Clytia hemisphaerica|type=transcript|length=830bp|location=Sequence derived from alignment at scaffold_237:340984..341813- (Clytia hemisphaerica)
GCAGAACTTTTATAGGATTCTGTAAGGTTGGAATTCCGAAATTTTTCAAA
ATATTCAGGAGGATCAATCAATTTAATTCAGACATTAGTGTTACTGGAAG
ACAGAAATGACTGAACAACTTTGGTGTTTGTTTTTAATGATTTTCATGTG
TATTTTACATGAAACCAAAACACAAGGTTGTGCTGGAGTGCGGTGGCAAC
ATAGATGTAAAAATAGGGTAAGTACCTTAAGTGGATTAATTTAACGTGTA
CATTTTGTGAATCGAAGATCTAAAATTTTCGCGTGGAAAATCGGCTATTT
TTCATTTAATACTTTGAATCTGAAAATTCAAACAGCAGAAATGTATGCAT
GCTCATTTCATTGACGACGAAACAATACCCCCTCGGAAATCAATTTAGAT
CGATAGTTTCGCAAACCGTAATTACCGTTAACAATTCAAAAGATGGCTCA
ACAATTAATTTAAAACATAAAATTTTCCGAATAATTCGAGATATGAACCA
AGCTGACCACTTAAAAAAAGACTTTGTCAATAAAGCACCGGACTACTTCT
GACTGAACTTTGCTTTCTGATGATTTTGATGGTGCCGAGTCCAGTTATCA
AAAAGCTATAGGTTGCCCCCGGGCTAGCTGTACCGCAGCACTATTTTGTT
GAGCGAGCTTTTGGATTGTTAATCGCAGCTGCGGTACTCTACTAACCTGA
TTTTGTGCCTGTTTATTAATAAGAATGTTTTCTTTTTACTTCAACCGATT
TAATACACCCCAAAACATATGTAAAAAATTTTAATGACGCATCTTTTTAT
TTACAGAGAATTGGCGGAGGGGGTGGGCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034064XLOC_034064Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053975-exon-scaffold_237-1575043694:341597..341813TCONS_00053975-exon-scaffold_237-1575043694:341597..341813Clytia hemisphaericaexon
TCONS_00053975-exon-scaffold_237-1575043694:340984..341007TCONS_00053975-exon-scaffold_237-1575043694:340984..341007Clytia hemisphaericaexon
TCONS_00053975-exon-scaffold_237-1510915933:341597..341813TCONS_00053975-exon-scaffold_237-1510915933:341597..341813Clytia hemisphaericaexon
TCONS_00053975-exon-scaffold_237-1510915933:340984..341007TCONS_00053975-exon-scaffold_237-1510915933:340984..341007Clytia hemisphaericaexon
TCONS_00053975-exon-scaffold_237-1491911889:341597..341813TCONS_00053975-exon-scaffold_237-1491911889:341597..341813Clytia hemisphaericaexon
TCONS_00053975-exon-scaffold_237-1491911889:340984..341007TCONS_00053975-exon-scaffold_237-1491911889:340984..341007Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:340984..341813 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.13793	1.06532	0	0.92386	0.896721	1.17894	0	0	0	0	0	0	1.88175	0	1.71152	0	1.01483	1.84526	0.950289	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053975 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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