|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053951 ID=TCONS_00053951|Name=TCONS_00053951|organism=Clytia hemisphaerica|type=transcript|length=900bp
GGTCAACCTTTTAACGAGATTGATGTCAATCTATTCCTTTGATCCAATAA
ATGATGATCTTTTTTGTGACGCAGGGTATTGTGTCAGGTTAATATCAAAG
GATCCTGTTTGTTACCAAGCGAAGGATGACAAACCTGGTGGATTTGAAGT
ACCATACAGTGGAGAGATCGTTATGGTGATCCTCAAACATTTTTCTGGAT
CCATTTCATGTTACCCTGGTTATAAAAGTTATTGGTTTTGCAAGAAACTT
GGTACGGGAGCACACATGAGCCTTTTGCTAACTAATAAAGCAGATCAGAA
ACTCGATTTCGACTCCGTGTTTATTCGCGATATAAATCCAGAAATATTTG
CATTCAAAAACGAATTGGGTTATGAAGTCACAGAAGGTGATGAATTACGA
ATCTGGTTTTATGAAGATCGAGAAAATCATTTGGAAGATGATAACAGTGG
AGAGCATTGTGTTTATGTTCATGTCGTATATAAACGTGATACGATGACGG
GTACAAGTGTGCTTACAAATGTGGTTACAAATTTGGTTACATAAATGAAA
TGGTTTTTAACGAGGGATAaattacttgaaaaaaggtgtacgatactttt
tgacttttcgaattttcatttgactttttgacttttttttgactttttgt
ccaaaaacgccaaccgacaataaattttgctccacccatcctCCCATTCA
AGAACACTTTTAGATATTTTCtagactttttttttacttttatttgactt
tttgacttttttctaagaatttttcactttttctttgactttttgagttt
ttctttgactttttgtagaggtgtacGATAGTTTTTGAGTGGTTTACCCG
TCGGTTTTTAGTTATAATTAAAGTTCAGGTACCACGACATCAACAAGTAT Run BLAST on NCBI transcript from alignment at scaffold_237:118155..125917- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053951 ID=TCONS_00053951|Name=TCONS_00053951|organism=Clytia hemisphaerica|type=transcript|length=7763bp|location=Sequence derived from alignment at scaffold_237:118155..125917- (Clytia hemisphaerica)
GGTCAACCTTTTAACGAGATTGATGTCAATCTATTCCTTTGATCCAATAA
ATGATGATCTTTTTTGTGACGCAGGTGGGTTTAACTTTTTGGGTACACGT
TTTCTTTCATAAGAGCAAACTATATAAGAACATAAGGCTTCGATGGCCAA
AATCTTAAAAACCTGTTAAGAACATTTGAAGGCTTCGCGGACTCTAAAAC
ACCCGATTTCTTAAAAACTGGACAAAAATACTCAAAAATTGGCACAAATA
AAAGAACATTTTAATTTTGGGTGGGGGGGGGTCAATGTAAAGTNTACCAC
GAAAGTCGCAGAAACAACTTCACCAGCTACAACATCAACGACACCCAAAA
CGTCTTCAACAACACCAAAAACGTCTTCAGCAACACCTAACAAGATTTCA
GAACAAGCTACAACAGCAAAATCGACCACGACGTCCACAACAACAACCCA
TACACCGCCCCAAACGTCTTCGAATCCACCCACAACGTTTACAACAACTA
CCACTCAAACGACTTCGACAAGCTCGCAAATTACAACAACTGTTCCCGAT
ACTACGAAAGCAATACCAACTGCAGAAGCAACAACAAAAGCGAAAACTAT
CCAACAGCAAACGACAACATCTCGGACAACAATCCCACAGTCAACAACAG
CATCTTCGACAACCATCAAACAACCAAAGACAACATCTCTGACAACGACA
TCCTCGCCGACATCGTCACCAACAACGACATCATCACCGACAACGACATC
GTTACCGACANTACGTCATCACCGACAACGAAATCATTACCGACAACGAC
ATCACCACCGACAACGACATCATCACCGACAACGACATCATCACCGACAA
CGACATCATCACCAACAACGACATCATCACCGACAACGACATCATCACCG
ACATCGACATCATCACCGACAACGACATCATCACCGACAACGACATCAAC
GTCAAAACCTTCGACAACCCAACATCCTTCGACAATACCTCCGCCATCAG
AACTGGTCAACCTTTTAACGAGATTGATGTCAATCTATTCCTTTGATCCA
ATAAATGATGATCTTTTTTGTGACGCAGGTGGGTTTAACTTTTTGGGTAC
ACGTTTTCTTTTATAAGAGCAAACTATATAAGAACATAAGGCTTCGATGG
CCAAAATCTTAAAAACCTGTTAAGAACATTTGAAGGCTTCGCGGACTCTA
AAACACCCGATTTCTTAAAAACTGGACAAAAATACTCAAAAATTGGCACA
AATAAAAGAACATTTTAATTTTGGGTGGGGGGGGGTCAATGTAAAGTGAT
TCTGGGGTGATTTTCCCAAAAACCCAAAAAAGGTTTTGGCACTTTTTGGC
ACTTTTTCAGGAAAATTTCATAAAATGGTATTGGGTGAGGGTGAGTGAAC
CCTCCCCTATCAATTAAGCACAAGAGTACTAGGTTTCTGAGGTTACTCTT
AGGTGTCAAATAAACGGGGGAGTTCGAATAAATGGGGGGGGGGGGTGGAA
AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTTGGAAAAAAAT
CGAAAAATTAACAAGCGAGGGGGCCCGTTTATTTGGCACCTAAGAGTAAA
GCCTTTAAACCTTAGAGTAGTTTCTCCTCAAATTATTCTCGCAACTTTGC
TTGTTTTAAGTTCTTTAAAATAATGATCCTTTGAGGACATAGATTTTCTC
TTTCGTGATACACACGCTTTTTTAAGAATAGTGTACTTTGGATGAGGATC
AAATTATATTATTAAGAAATTGCCAAAATTGAGGGTGAAATATTCTTCAC
GTATTCTTACTTTTTTAGACTTGACTTTTATACAAATATGAGAAATGATC
AATTTGAGACTTTTTTTGAGTACACATTAAAATCATATTTCTGCCTCGAA
CTTTCAATTTAAGTCTAACAAAAGAAGCTAACGAAATACAAAATTGACAC
GGATATGTGAAGCAAGATTGGTCAGAAAGAAGAAAAGAAAAACATTTCTT
GCTTATATCAGCATAATATAACAATAGCAAGACACTGTCCTGATATGAAA
TATGTGTCTGATATGAAACGGAAATAATTATGTAAAAAAAACCTTTATTA
AAGTTATGTGTTTTAACTCGATGTGCTCATTTATTCTTCTAGGGTATTGT
GTCAGGTTAATATCAAAGGATCCTGTTTGTTACCAAGCGAAGGATGACAA
ACCTGGTGGATTTGAAGTACCATACAGTGGAGAGATCGTTATGGTGATCC
TCAAACATTTTTCTGGATCCATTTCATGTTACCCTGGTACAAATTATTTC
ATTACTTAGGGACCACCAAAGACTAGGTTGCTCATTTCCTACTGCCTCGT
TTGCTATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAATTGGTAATAGCTCCTGAAATAATAGAGCTTTT
GTCATGAAATTTTCTGTAAATTCCTAACTTTTATTTAGCTTCAAAATAAA
TAAAAAATTGACACCTAAAAATTTTCACACCTTGAACATGATGACATTTC
TGATAGTAAGGTGTCACAAAAATTGACACTTTTCCAATACAAATTTATTT
TCTATGTCAAATTCATCGTTCAAACCGTAATTTATTAAATATTTAGGATA
AAATAAGCATTTTAAACCTTTGTTAGAATACAAAAGCTATTTTTGTGAAC
AAAGGAAATTTTCGGATTTTGCTCACTTTGGGCATGATGAGTGACGCCAT
CAAAAAAATGTTTGTCAAAAGTTACCTTATGTGACAAGAATCTTGTGTGT
CAAATTTCATCCAAAACGACCCACTAGATCAAAAGTTAAGGGGTGGTACA
GGAAAAGTTTTTTAGTTTTGAACCACCCCTAAAAGCCTAGTATGAATAGG
GTTAAAGTAAAATTATTTCTCTCATTTAAAAATCACATAAATAAGGTTGT
CCGTAGGAGTAAAAAAAACAGCAAAAAATGGAGTTTTTCGACCACTATTT
ATCTTCAATTTCTAAAAATTCTTTGAGTTATTTTTCCCAAAGCTTAAAGT
ACTCTGAATTATCTTTTAAACGTCATATGATTTGCTAGATTTGGAGGATT
AATCGGAAAATAAAAAGCAAAACAAACACTGGGCGAAATAAGAGATTTCC
AATCCTGGAAATATCTTGAAAATATGATATTTCCATTCACTTTTGTAAAT
ATGGAAATATGACTTTTCTATATTTCCAAAGTTGGAAATATTTTGAAAAT
ATGATATTTCAATGAATTTCAGAATTGGGAACATCATGAAATATGATATT
TCCACAGCTTTCCAAGATATTTCCAGGATTGGAAATCTCTTATTTCAACC
AGTGAAAGATTAGTACACATTTGAGGCGAATGAACTATGAATCTAAATTT
AAATGAAATAGTTTTAACGGCCATCAAATNGGTACTATGGTTGCAAGCTG
ACGAGGGGTGCCGCCCATCTTTCGACCCTCGGACCCTTACCGAGAGGAGA
AAACAAAGGAAAGTTTTGTGAATTTTACGACCCTTACCGGGACAAATTTG
ACGAATTTTGACCAAATTTCGATCTTTCAGGGGGTAAAAAGTTGAAATTC
TCCTATTTCTCCTACCCTTAGTGGGACTGAAATTTGATTTTCTGATTTTT
CCGACCCTTAGCGGGACTTTGGAAATCCAAAAAAGGTACCCTTAAGGGCG
GCACATACCGTACCCTCCATTTGTCTAAGTTGTCTAAGTAGCCCGCCCCC
GCGGGCGAGAAAAAAAATTAGCGAAAACCTTTTTCTATAAATCTGAAAAA
TTCTGATTCGCGAAACAGAAGAATTATATCAAATTAATATTAAATACTTA
ATGGGGATGGATATCAAATATTAAGATCAGATTTAAGGTAAATTTGTCCT
TTTTAGGCCAATATTTGTTTAAAATTCTATTTTTCGAAATCTAAAAATCC
CGACAGTTTATGCTCGTGAGAGTAAATGTCTTCAATTTAGCAAGTTTTTC
GAACGACATAAAATATATACGCCTAAACTAATATAGTTGACTCTATCTAA
TTCGATCTTCATGGGGCCAAAAACTTTCCTTCGAATTAGAGAAAAATTCA
AATTACAGAGAGTAAATTTAACCACTTTCCACCTGAGGGAACCAATATTT
TAGTTCAAATTACAGAAAGATTGCAACCTTTTTCTACCATTTCTAGGTTA
TAAAAGTTATTGGTTTTGCAAGAAACTTGGTACGGGAGCACACATGAGCC
TTTTGCTAACTAATAAAGCAGATCAGAAACTCGATTTCGACTCCGTGTTT
ATTCGTAAGTTTTAGCAAATTATTTTCTTACTGATTATAATCCCTGGGTC
ATTAGATTAAATTCGTCTATACTTCGCAGGCAGTAATATAGGCGCTTTAA
AATAATATGAGAGTTTGTGTTGAACTACAATCATGGTCGAAACAATTTCA
GAATTTAGTGTTTTTCAGAATTTAAAGTTCGGGCGACAATTGTTGTTTTA
GCACTTCCACTTTCTTTCATCGAATATTCCGATTTTGGAGGGGTTCGGTG
GCTTCTAGGCTATATATTCCAAGCCTTATTGGAGCTAATTTGAGCTTTTA
AATCCTGAGATCCTAAGGTCTTAAGTCTTAAAACTTAGAGTTAAAACTCT
ACTTTCCAACTGTAGTTTAACCCGCTTAAAAATCTTTTGTGGTGTTATTT
GAAATTTCGCCGGGAAATCTCCTTTGTCTCAAATGTTTTGTCCATGATTG
TATGGTTTTTAGTTTTCGCAGCATACCCTACTTAGGCCCGTCTAAGGCAG
AACAAAGGGAGGATGGTGGGTTGGGAAAATCTTCAAATTTTAATAAATTG
TGGGTCCTAATTGTTCCTCTAAATACCTCCAAAATAAGGTAATTATAGAC
TAAAACTTGGCTATTTAGCGCAAAAGAAGACAGCTGAAAATATTTTCAAA
CATTAATTGCCGGGGGTCCTAATCATAGATTTATAAAGCCCCGAAGGGCT
AGATGTCGTGCTTTCGCTTAAAAGTGTGCCAAGGTTAAGTAGAAAATCCT
ACCTAGGTCACGTGACATTACAATAGACTTTCAGCGCTTGACCAATAAGA
AGCTTCGCGGGTTTTCGAAAGCAATAGCAGCAATCTTTTTTGAGATTTAC
TTTTTTCTTCAAAGTAGTATAAAATTGTCTCTGTAATTCGAAAAAAATCC
CTGGTCCCTTGAAGATCGAATTAGAGAGAGAAAGTCAACTCTAGTTGTTT
TTTTCTTAATGATTTTGTAAAAGCTCGTTACAGTTGAAGCACTATTTCAA
ACACTTGCAAACTTGATATTTTAGGCGATATAAATCCAGAAATATTTGCA
TTCAAAAACGAATTGGGTTATGAAGTCACAGAAGGTGATGAATTACGAAT
CTGGTTTTATGAAGATCGAGAAAATCATTTGGAAGATGATAACAGTGGAG
AGCATTGTGTNAGATCATCTAAAATTAACAATTTTCTTTTGAAATTTTAG
GAGCTTTCCTCCTGATATTTTGAGGGAGACATTTCAGATCTTCGCAATTT
TGGAGCCTGTAATAGAGACTGATTTGCTTTTTTATAGATTTTGCACCCCC
TTTGTGAGGCTTGTGAGGGTTTTGATGAATTCTCCCGTGCAAAATGATTT
CATAGTTATCACACATTATTGTTTTCAGTTTTTAGATGACATAACTATCA
AGAAAGAAAGAAACAACAATCTTTCATTTTTGTACAACTCTAAGTTCATG
TCTTTAGATAATGATCAGCTACTGAATAGCTTTTATCAAAATGAAATACA
GTAAACTCTCTCTAATTCGAACCTCTATTATTCAAATCTTTCTATAATTC
GAACTAAAATTTTAGTCTCAACTTCAAAGTAGTATAAAATGGTCTCTGTA
ATTCGAAGAAAATCCCTGGTCCCTTGAAGATCGAATTAGAGAGAGAAAGT
CAACTCTAGTTGTTTTTTTCTTAATGATTTTGTAAAAGCTCGTTACAGTT
GAAGCACTATTTCAAACACTTGCAAACTTGATATTTTAGGCGATATAAAT
CCAGAAATATTTGCATTCAAAAACGAATTGGGTTATGAAGTCACAGAAGG
TGATGAATTACGAATCTGGTTTTATGAAGATCGAGAAAATCATTTGGAAG
ATGATAACAGTGGAGAGCATTGTGTTTATGTTCATGTCGTATATAAACGT
GATACGATGACGGGTACAAGTGTGCTTACAAATGTGGTTACAAATTTGGT
TACATAAATGAAATGGTTTTTAACGAGGGATAAATTACTTGAAAAAAGGT
GTACGATACTTTTTGACTTTTCGAATTTTCATTTGACTTTTTGACTTTTT
TTTGACTTTTTGTCCAAAAACGCCAACCGACAATAAATTTTGCTCCACCC
ATCCTCCCATTCAAGAACACTTTTAGATATTTTCTAGACTTTTTTTTTAC
TTTTATTTGACTTTTTGACTTTTTTCTAAGAATTTTTCACTTTTTCTTTG
ACTTTTTGAGTTTTTCTTTGACTTTTTGTAGAGGTGTACGATAGTTTTTG
AGTGGTTTACCCGTCGGTTTTTAGTTATAATTAAAGTTCAGGTACCACGA
CATCAACAAGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053951-exon-scaffold_237-1575043694:125844..125917 | TCONS_00053951-exon-scaffold_237-1575043694:125844..125917 | Clytia hemisphaerica | exon |
| TCONS_00053951-exon-scaffold_237-1575043694:122632..122775 | TCONS_00053951-exon-scaffold_237-1575043694:122632..122775 | Clytia hemisphaerica | exon |
| TCONS_00053951-exon-scaffold_237-1575043694:120464..120571 | TCONS_00053951-exon-scaffold_237-1575043694:120464..120571 | Clytia hemisphaerica | exon |
| TCONS_00053951-exon-scaffold_237-1575043694:118155..118728 | TCONS_00053951-exon-scaffold_237-1575043694:118155..118728 | Clytia hemisphaerica | exon |
| TCONS_00053951-exon-scaffold_237-1510915933:125844..125917 | TCONS_00053951-exon-scaffold_237-1510915933:125844..125917 | Clytia hemisphaerica | exon |
| TCONS_00053951-exon-scaffold_237-1510915933:122632..122775 | TCONS_00053951-exon-scaffold_237-1510915933:122632..122775 | Clytia hemisphaerica | exon |
| TCONS_00053951-exon-scaffold_237-1510915933:120464..120571 | TCONS_00053951-exon-scaffold_237-1510915933:120464..120571 | Clytia hemisphaerica | exon |
| TCONS_00053951-exon-scaffold_237-1510915933:118155..118728 | TCONS_00053951-exon-scaffold_237-1510915933:118155..118728 | Clytia hemisphaerica | exon |
| TCONS_00053951-exon-scaffold_237-1491911889:125844..125917 | TCONS_00053951-exon-scaffold_237-1491911889:125844..125917 | Clytia hemisphaerica | exon |
| TCONS_00053951-exon-scaffold_237-1491911889:122632..122775 | TCONS_00053951-exon-scaffold_237-1491911889:122632..122775 | Clytia hemisphaerica | exon |
| TCONS_00053951-exon-scaffold_237-1491911889:120464..120571 | TCONS_00053951-exon-scaffold_237-1491911889:120464..120571 | Clytia hemisphaerica | exon |
| TCONS_00053951-exon-scaffold_237-1491911889:118155..118728 | TCONS_00053951-exon-scaffold_237-1491911889:118155..118728 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:118155..125917 - |
Blast
The following BLAST results are available for this feature:
|
