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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053938 ID=TCONS_00053938|Name=TCONS_00053938|organism=Clytia hemisphaerica|type=transcript|length=949bp
TTCAGGTATTCTCTTCATGGAGAGAACTTCATTTGATGTTTCTTTAATGT
TAACTTGAACATTCCTGTTCAACATTTCACATAAAATGAGTTCTATGTCC
GAACCATCATTTTGCAAGAGTTTTTCAATGAGCTTGCGGTCACAACACAA
TGGCATGCAGCGACTGGTAATTTTCAGGGTGAATTTAACAATCGATGTAG
TGAGGACATCTGATTGCGCCATTCCTTGGTCGCAAGTTTCACAAGTAACA
ATTGAACGAATGTATTTCACCGGATTTTTACAGTGTTTGCAGAGATTAAT
GTCTTTTAACGATGACAGTTCCACACTGGATATACGTCCAACTTTCATTG
TGGTGGGTACAGCTGGTAACTTGATAGCACCTTCTAACAGTTCACTTTGT
TCCGAGCGATCTGAACCCTTCAAAATGCGATTCCTATTGAATTTGCTCAC
TGTAATGTGAGTTAGTCGGTATGAGTTGTTAACTTCAAACTTTCCAACCA
TGTCTGAATATACCGTAAGTGGTTTTGGATGTGGTAAGCTGTTGTCAGTA
ACCAATAACTGTTGATAAGGAAGCATTTCCTTGCTGATTCCAGGTATGTT
TGTACTTGTGATCAAGACTTCCAGATGAAGGCGAGAAAACATATGTACCT
CAGTCATGGCTTCTTTGATTGTGCTGATCTGTATCGGGATTTCATAATGT
TCAAAAGGTGGTGACATGTAAACAATATTAGATTgatcagtgaaaaaaaa
atcaccatTGGTTGCTCCTGAAACATGCGTGATTGTGACTCCTTTATCTA
CAGTTTTTAAAAACGATCCATGTTGATTCACATCGTATACAACCAGCCTT
TTCTCCATTTTTTCTTGTACAAGaatgaaaacttcaaaatattttgactt
tggAGGACTCACATACGATACAAAGCCAACCAAGTCGGTGAGATCTAAA Run BLAST on NCBI transcript from alignment at scaffold_237:363703..365354+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053938 ID=TCONS_00053938|Name=TCONS_00053938|organism=Clytia hemisphaerica|type=transcript|length=1652bp|location=Sequence derived from alignment at scaffold_237:363703..365354+ (Clytia hemisphaerica)
TTCAGGTATTCTCTTCATGGAGAGAACTTCATTTGATGTTTCTTTAATGT
TAACTTGAACATTCCTGTTCAACATTTCACATAAAATGAGTTCTATGTCC
GAACCATCATTTTGCAAGAGTTTTTCAATGAGCTTGCGGTCACAACACAA
TGGCATGCAGCGACTGGTAATTTTCAGGGTGAATTTAACAATCGATGTAG
TGAGGACATCTGATTGCGCCATTCCTTGGTCGCAAGTTTCACAAGTAACA
ATTGAACGAATGTATATCACTNACGTAGTCTAAATTAAAAACCTTAGGTT
GAGCTTGTTTTTAGTTGTCTCGCATTTCAACTCCATGTTGTTATTATTAA
AAAGCATGTACCCCAATTACtttcgaaattaaaaaaaaaaaaattagact
tCATGAAGATTAGACACATTTTTCACACTAAAATAAATGAGATTTGGGTG
TTCAGAACTTCTTGCCATATATacatttttatatacatttttttcataaa
taacagtaagaaatattaacaaaagggataataaacataaaaaacattGA
AACCAACCAGTggtagaatgataaaaaatttaaagaaattctcaaaaaat
tccTGTGTTCAAATACATCTAACAAacctttcaaaaaagtaaaagtaaca
AAAAATGTAAATCACCAACAGTACAATCAGTTTTCACAATGTTCTTCCAT
CAGATAAGGACCGAGTTCATTTTAACTGTCACAATCATTCTTGGTAATTT
AATGGTCATCATTACTTAGTTCACTGACATTTCACATAAAATTAGTTCTA
TATCCGAACCATCATTTTGCAATAGTTTTTCAATGAGCTTGCGGTCACAA
CACAATGGCATGCAGCGATTGGCACTTTCCAGAGTGAATTTAACAATCGA
TGTAGTGGACATCTGATTGCGCCATTCCTTGGTCGCAAGTTTCACAAGTA
ACAATTGAACGAATGTATTTCACCGGATTTTTACAGTGTTTGCAGAGATT
AATGTCTTTTAACGATGACAGTTCCACACTGGATATACGTCCAACTTTCA
TTGTGGTGGGTACAGCTGGTAACTTGATAGCACCTTCTAACAGTTCACTT
TGTTCCGAGCGATCTGAACCCTTCAAAATGCGATTCCTATTGAATTTGCT
CACTGTAATGTGAGTTAGTCGGTATGAGTTGTTAACTTCAAACTTTCCAA
CCATGTCTGAATATACCGTAAGTGGTTTTGGATGTGGTAAGCTGTTGTCA
GTAACCAATAACTGTTGATAAGGAAGCATTTCCTTGCTGATTCCAGGTAT
GTTTGTACTTGTGATCAAGACTTCCAGATGAAGGCGAGAAAACATATGTA
CCTCAGTCATGGCTTCTTTGATTGTGCTGATCTGTATCGGGATTTCATAA
TGTTCAAAAGGTGGTGACATGTAAACAATATTAGATTgatcagtgaaaaa
aaaatcaccatTGGTTGCTCCTGAAACATGCGTGATTGTGACTCCTTTAT
CTACAGTTTTTAAAAACGATCCATGTTGATTCACATCGTATACAACCAGC
CTTTTCTCCATTTTTTCTTGTACAAGaatgaaaacttcaaaatattttga
ctttggAGGACTCACATACGATACAAAGCCAACCAAGTCGGTGAGATCTA
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053938-exon-scaffold_237-1491911889:363703..363909 | TCONS_00053938-exon-scaffold_237-1491911889:363703..363909 | Clytia hemisphaerica | exon |
| TCONS_00053938-exon-scaffold_237-1510915933:363703..363909 | TCONS_00053938-exon-scaffold_237-1510915933:363703..363909 | Clytia hemisphaerica | exon |
| TCONS_00053938-exon-scaffold_237-1575043694:363703..363909 | TCONS_00053938-exon-scaffold_237-1575043694:363703..363909 | Clytia hemisphaerica | exon |
| TCONS_00053938-exon-scaffold_237-1491911889:364613..365354 | TCONS_00053938-exon-scaffold_237-1491911889:364613..365354 | Clytia hemisphaerica | exon |
| TCONS_00053938-exon-scaffold_237-1510915933:364613..365354 | TCONS_00053938-exon-scaffold_237-1510915933:364613..365354 | Clytia hemisphaerica | exon |
| TCONS_00053938-exon-scaffold_237-1575043694:364613..365354 | TCONS_00053938-exon-scaffold_237-1575043694:364613..365354 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:363703..365354 + |
Blast
The following BLAST results are available for this feature:
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