TCONS_00053910 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053910
Unique NameTCONS_00053910
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053910 ID=TCONS_00053910|Name=TCONS_00053910|organism=Clytia hemisphaerica|type=transcript|length=512bp
TGCAGTGTTTTCTGATTCCCTGCTACGACCAGTCGTACAAAAGCTCTTGA
AAGCTCCTCCCAATTTTTATGTCAATTGTACACCTGGTGGGACAGCAGGA
CATATTCAAATTGAACTGGAAGCTTCCATCGTTCAGCCTTCTTGTGTTTA
TTTTGTTGCCGGAACCAATAATTCATCGTCCAGTGATTACGTTACGCTTC
GACAATTTCAGAATCTAATTTATGCTGCcaaacaaaaatttccacgtacT
CCGATAACCGTTGTTTCTGTACCCAAACGACTGGACGCTGATGTCACTTG
GATTAACAAATTATGGAAGGAAGTAGCTTGCAACGAAAGTGTAGGATTTC
TGGAGGTGGATTTGGATTACAGCAATCCCAATACATGGAAACTGAAAGAC
AANTAGGATTTCTGGAGGTGGATTTGGATTACAGCAATCCCAATACATGG
AAACTGAAAGACAAAGTCCATCTCAGTCTTGACAGTTGTGGGCTCCCTGC
ATTTTTCGACGC
Run BLAST on NCBI

protein sequence of TCONS_00053910-protein

>TCONS_00053910-protein ID=TCONS_00053910-protein|Name=TCONS_00053910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
AVFSDSLLRPVVQKLLKAPPNFYVNCTPGGTAGHIQIELEASIVQPSCVY
FVAGTNNSSSSDYVTLRQFQNLIYAAKQKFPRTPITVVSVPKRLDADVTW
INKLWKEVACNESVGFLEVDLDYSNPNTWKLKDX
Run BLAST on NCBI

transcript from alignment at scaffold_236:58863..59565-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053910 ID=TCONS_00053910|Name=TCONS_00053910|organism=Clytia hemisphaerica|type=transcript|length=703bp|location=Sequence derived from alignment at scaffold_236:58863..59565- (Clytia hemisphaerica)
TGCAGTGTTTTCTGATTCCCTGCTACGACCAGTCGTACAAAAGCTCTTGA
AAGCTCCTCCCAATTTTTATGTCAATTGTACACCTGGTGGGACAGCAGGA
CATATTCAAATTGAACTGGAAGCTTCCATCGTTCAGCCTTCTTGTGTTTA
TTTTGTTGCCGGAACCAATAATTCATCGTCCAGTGATTACGTTACGCTTC
GACAATTTCAGAATCTAATTTATGCTGCCAAACAAAAATTTCCACGTACT
CCGGTAAGATTCTGGAAGTATTATCCTAAGTTTTTTGGAACTAGTCTCGA
TTTATCTAAGACATCACTTCGTCTCTCTGACCCTTACAGTGCAATATAGG
GAGCCTGAAACCTTAGAGAGTACTGAAAAGAGCCAATTAACCATATAGTT
TGGAGTTTCCATAATTAAAAGTAAGTTTATGCTGATATCTTTAGATAACC
GTTGTTTCTGTACCCAAACGACTGGACGCTGATGTCACTTGGATTAACAA
ATTATGGAAGGAAGTAGCTTGCAACGAAAGTGTAGGATTTCTGGAGGTGG
ATTTGGATTACAGCAATCCCAATACATGGAAACTGAAAGACAANTAGGAT
TTCTGGAGGTGGATTTGGATTACAGCAATCCCAATACATGGAAACTGAAA
GACAAAGTCCATCTCAGTCTTGACAGTTGTGGGCTCCCTGCATTTTTCGA
CGC

Coding sequence (CDS) from alignment at scaffold_236:58863..59565-

>TCONS_00053910 ID=TCONS_00053910|Name=TCONS_00053910|organism=Clytia hemisphaerica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_236:58863..59565- (Clytia hemisphaerica)
ATAACCGTTGTTTCTGTACCCAAACGACTGGACGCTGATGTCACTTGGAT
TAACAAATTATGGAAGGAAGTAGCTTGCAACGAAAGTGTAGGATTTCTGG
AGGTGGATTTGGATTACAGCAATCCCAATACATGGAAACTGAAAGACAAN
TAGGCAGTGTTTTCTGATTCCCTGCTACGACCAGTCGTACAAAAGCTCTT
GAAAGCTCCTCCCAATTTTTATGTCAATTGTACACCTGGTGGGACAGCAG
GACATATTCAAATTGAACTGGAAGCTTCCATCGTTCAGCCTTCTTGTGTT
TATTTTGTTGCCGGAACCAATAATTCATCGTCCAGTGATTACGTTACGCT
TCGACAATTTCAGAATCTAATTTATGCTGCCAAACAAAAATTTCCACGTA
CTCCGATAACCGTTGTTTCTGTACCCAAACGACTGGACGCTGATGTCACT
TGGATTAACAAATTATGGAAGGAAGTAGCTTGCAACGAAAGTGTAGGATT
TCTGGAGGTGGATTTGGATTACAGCAATCCCAATACATGGAAACTGAAAG
ACAANTAGGCAGTGTTTTCTGATTCCCTGCTACGACCAGTCGTACAAAAG
CTCTTGAAAGCTCCTCCCAATTTTTATGTCAATTGTACACCTGGTGGGAC
AGCAGGACATATTCAAATTGAACTGGAAGCTTCCATCGTTCAGCCTTCTT
GTGTTTATTTTGTTGCCGGAACCAATAATTCATCGTCCAGTGATTACGTT
ACGCTTCGACAATTTCAGAATCTAATTTATGCTGCCAAACAAAAATTTCC
ACGTACTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034036XLOC_034036Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053910-proteinTCONS_00053910-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053910-exon-scaffold_236-1575043694:59313..59565TCONS_00053910-exon-scaffold_236-1575043694:59313..59565Clytia hemisphaericaexon
TCONS_00053910-exon-scaffold_236-1575043694:58863..59121TCONS_00053910-exon-scaffold_236-1575043694:58863..59121Clytia hemisphaericaexon
TCONS_00053910-exon-scaffold_236-1510915933:59313..59565TCONS_00053910-exon-scaffold_236-1510915933:59313..59565Clytia hemisphaericaexon
TCONS_00053910-exon-scaffold_236-1510915933:58863..59121TCONS_00053910-exon-scaffold_236-1510915933:58863..59121Clytia hemisphaericaexon
TCONS_00053910-exon-scaffold_236-1491911889:59313..59565TCONS_00053910-exon-scaffold_236-1491911889:59313..59565Clytia hemisphaericaexon
TCONS_00053910-exon-scaffold_236-1491911889:58863..59121TCONS_00053910-exon-scaffold_236-1491911889:58863..59121Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_236supercontigscaffold_236:58863..59565 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.1053	1.4973	0.301071	0.422788	0.394672	0.244433	0	0.15596	0.0778717	0.161741	0.265946	0.142701	0	0.180185	0	0	0	0.165656	0	0	0.377137	0.673172	0	0	0	0.132407
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013830SGNH_hydro
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053910 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top